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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BT04
Library FC
(Link to library)
Clone ID FC-BT04
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16023-1
Original site URL
Representative seq. ID FC-BT04P
(Link to Original site)
Representative DNA sequence 
>FC-BT04 (FC-BT04Q) /CSM/FC/FC-BT/FC-BT04Q.Seq.d/
AAATAGTGCTACCTTTATAAAATATATGGACTTATCAGATTCAGGTCCTATATTTTTTAG
AACTATTACAAATCCATTCATATATTTTTACAATGATACAAATATTAATAAGATTTCCAT
TACTTGTAAAAATGAAATTTTTGGTTCAAATTCTATACCACCACAATTATTATCATTTTC
TTCCTCAACAAGCCAATTGGATGTTGGATTAATCAATAAAGTTGATTTTGATTTTGATTC
ATTTGATGATTTAGGTATTAAAGAAAATCAATTCCCAATTGTTTATCTTTCAACAAGAAA
ATATGAAACCATTCAATGTATTTCAAGGAACACTTCAATTTTTGATAAATCTACAAGATT
TAGATGTTCAATTGAAATTCCAATTGGATTTGGATATCCAAATGGAATTTTATTATCAGT
GTATGGTTTTATAAATAATGGTGGTTATTTTAGTGGTTTTTGTTCACAACAATTACTTGA
AATGAATTTTTCAAATTTTATCTCAACTAATGGCACATTTACACTTGATCAACCATATAT
TAAAAGTTCAAATAAAATTTCAAATCTTGGAGGTAATTTATGGATTTTTGGTAGAGGTTT
TGGAGTGAATTGTACTGTTTGGGTAAGATATATTGATGATATTGGTTTTAATCAATGTGT
AXXXXXXXXXXGAATGAATCCATCATCAATTAAATATACAGTTAATATTACAAGTTATTC
ATTCGCTCAAAATCTTAACCATCTTCAATTGATTATGTCTGCATCATTACAATCCTCTAA
AACTGATGATATATGCTCTTCAAAATTATTTGGTAATACTAGCGATGGCGATAATTCAAA
CTTTATGAAACTAAAAGTAAATGATCATTCAGTATATGGTAGATTTATTAAACGTGCTAT
TGTTGATAATAAAATTATCTCTGTCGATAATAGTATTTTAGATGATTCAATAAATCCAGA
TTCAAATTCTCATAAATCTGAAACATTTATTGGTATCTCAATTCCATTTTATAGTGATAG
TGTATTGGTTGATCCTGATTTCTCTCTCCTTATCGATAATAGTCCCGCATCTTCAAATGA
TGAAAATTCAATTTGTGCATCCTCTTCCTCAAAATTATCAAAAGTACAAATTGCTGGTAT
TATAATAGGTTCGGTTGGTTTTACTGCTGTGGCCATAATTTCAACTATTTACATTATTAG
AAAAAGAAAAGAACAACAAACAATTATAAACAAAATGAAGAGAGTTAGCCAATCAGTGAA
TTAGCCATCAAAAAATAAAAAAATAAAAAAAAAAATAAAAAAAAAAATAAAAAATAAAAA
AAATAAAAAAAAAAATAA
sequence update 1998. 5.18
Translated Amino Acid sequence 
NSATFIKYMDLSDSGPIFFRTITNPFIYFYNDTNINKISITCKNEIFGSNSIPPQLLSFS
SSTSQLDVGLINKVDFDFDSFDDLGIKENQFPIVYLSTRKYETIQCISRNTSIFDKSTRF
RCSIEIPIGFGYPNGILLSVYGFINNGGYFSGFCSQQLLEMNFSNFISTNGTFTLDQPYI
KSSNKISNLGGNLWIFGRGFGVNCTVWVRYIDDIGFNQCV---

---MNPSSIKYTVNITSYSFAQNLNHLQLIMSASLQSSKTDDICSSKLFGNTSDGDNSNF
MKLKVNDHSVYGRFIKRAIVDNKIISVDNSILDDSINPDSNSHKSETFIGISIPFYSDSV
LVDPDFSLLIDNSPASSNDENSICASSSSKLSKVQIAGIIIGSVGFTAVAIISTIYIIRK
RKEQQTIINKMKRVSQSVN*psknkkikkkikkkiknkknkkkn
Translated Amino Acid sequence (All Frames) 
Frame A:
k*cylykiyglirfrsyif*nyyksihiflq*yky**dfhyl*k*nfwfkfytttiiiif
flnkpigcwinq*s*f*f*fi**fry*rksipnclsfnkki*nhsmyfkehfnf**iyki
*mfn*nsnwiwiskwnfiisvwfyk*wwlf*wflfttit*neffkfyln*whiyt*stiy
*kfk*nfkswr*fmdfw*rfwselyclgkiy**ywf*smc---

---e*ihhqlniqlilqvihslkiltifn*lclhhynplklmiyalqnylvilamaiiqt
l*n*k*miiqymvdllnvllliiklslsiivf*miq*iqiqilinlkhllvsqfhfiviv
ywlilislslsiivphlqmmkiqfvhplpqnyqkykllvl**vrlvlllwp*fqlftlle
keknnkql*tk*relanq*ishqkikk*kkk*kkk*kikkikkki

Frame B:
NSATFIKYMDLSDSGPIFFRTITNPFIYFYNDTNINKISITCKNEIFGSNSIPPQLLSFS
SSTSQLDVGLINKVDFDFDSFDDLGIKENQFPIVYLSTRKYETIQCISRNTSIFDKSTRF
RCSIEIPIGFGYPNGILLSVYGFINNGGYFSGFCSQQLLEMNFSNFISTNGTFTLDQPYI
KSSNKISNLGGNLWIFGRGFGVNCTVWVRYIDDIGFNQCV---

---nesiin*iys*yyklfirsks*pssidyvciitil*n**ymlfkiiw*y*rwr*fkl
yetksk*sfsiw*iy*tcyc***nylcr**yfr*fnksrfkfs*i*niywylnsil***c
ig*s*flspyr**srifk**kfnlcilflkiikstncwyynrfgwfyccghnfnylhy*k
kkrttnnykqnees*piselaikk*knkkknkkknkk*kk*kkk*

Frame C:
ivlpl*niwtyqiqvlyflellqihsyiftmiqilirfpllvkmkflvqilyhhnyyhfl
pqqanwmld*siklililihlmi*vlkkinsqlfifqqenmkpfnvfqgtlqflinlqdl
dvqlkfqldldiqmefyyqcmvl*imvvilvvfvhnnylk*ifqilsqlmahlhlinhil
kvqikfqileviygflvevle*ivlfg*dilmilvlinv---

---MNPSSIKYTVNITSYSFAQNLNHLQLIMSASLQSSKTDDICSSKLFGNTSDGDNSNF
MKLKVNDHSVYGRFIKRAIVDNKIISVDNSILDDSINPDSNSHKSETFIGISIPFYSDSV
LVDPDFSLLIDNSPASSNDENSICASSSSKLSKVQIAGIIIGSVGFTAVAIISTIYIIRK
RKEQQTIINKMKRVSQSVN*psknkkikkkikkkiknkknkkkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BT04 (FC-BT04Q) /CSM/FC/FC-BT/FC-BT04Q.Seq.d/                     2456   0.0
FC-BS23 (FC-BS23Q) /CSM/FC/FC-BS/FC-BS23Q.Seq.d/                     1201   0.0
VSF830 (VSF830Q) /CSM/VS/VSF8-B/VSF830Q.Seq.d/                         62   2e-08
SSD185 (SSD185Q) /CSM/SS/SSD1-D/SSD185Q.Seq.d/                         62   2e-08
VHM435 (VHM435Q) /CSM/VH/VHM4-B/VHM435Q.Seq.d/                         56   1e-06
CHN237 (CHN237Q) /CSM/CH/CHN2-B/CHN237Q.Seq.d/                         56   1e-06
SHC204 (SHC204Q) /CSM/SH/SHC2-A/SHC204Q.Seq.d/                         50   9e-05
CHL276 (CHL276Q) /CSM/CH/CHL2-D/CHL276Q.Seq.d/                         50   9e-05
CHG664 (CHG664Q) /CSM/CH/CHG6-C/CHG664Q.Seq.d/                         50   9e-05
AFJ808 (AFJ808Q) /CSM/AF/AFJ8-A/AFJ808Q.Seq.d/                         48   4e-04
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    46  2e-16  16
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    56  8e-12  14
AF466305|AF466305.1 Dictyostelium discoideum ABC transporter AbcB2 (abcB2) gene, complete cds.    42  2e-11  7
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    60  2e-09  13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    72  5e-09  14
AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.    56  3e-06  6
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    40  4e-05  10
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    46  4e-05  11
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    58  1e-04  13
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12 section 6 of 9 of the complete sequence.    40  4e-04  14
dna update 2003. 7.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_63(AC116984|pid:none) Dictyostelium discoideum chromoso...   221   4e-56
AC116984_70(AC116984|pid:none) Dictyostelium discoideum chromoso...   215   2e-54
AC116984_67(AC116984|pid:none) Dictyostelium discoideum chromoso...   213   9e-54
AC116984_134(AC116984|pid:none) Dictyostelium discoideum chromos...   208   4e-52
AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom...   201   5e-50
AC115612_9(AC115612|pid:none) Dictyostelium discoideum chromosom...   189   2e-46
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...   182   2e-44
AC117075_93(AC117075|pid:none) Dictyostelium discoideum chromoso...   174   6e-42
AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromoso...   170   1e-40
AC117072_39(AC117072|pid:none) Dictyostelium discoideum chromoso...   149   3e-34
protein update 2009. 4.14
PSORT 

 psg: 0.78  gvh: 0.39  alm: 0.23  top: 0.93  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for FC-BT04 is cyt
5' end seq. ID FC-BT04F
5' end seq. 
>FC-BT04F.Seq
AAATAGTGCTACCTTTATAAAATATATGGACTTATCAGATTCAGGTCCTATATTTTTTAG
AACTATTACAAATCCATTCATATATTTTTACAATGATACAAATATTAATAAGATTTCCAT
TACTTGTAAAAATGAAATTTTTGGTTCAAATTCTATACCACCACAATTATTATCATTTTC
TTCCTCAACAAGCCAATTGGATGTTGGATTAATCAATAAAGTTGATTTTGATTTTGATTC
ATTTGATGATTTAGGTATTAAAGAAAATCAATTCCCAATTGTTTATCTTTCAACAAGAAA
ATATGAAACCATTCAATGTATTTCAAGGAACACTTCAATTTTTGATAAATCTACAAGATT
TAGATGTTCAATTGAAATTCCAATTGGATTTGGATATCCAAATGGAATTTTATTATCAGT
GTATGGTTTTATAAATAATGGTGGTTATTTTAGTGGTTTTTGTTCACAACAATTACTTGA
AATGAATTTTTCAAATTTTATCTCAACTAATGGCACATTTACACTTGATCAACCATATAT
TAAAAGTTCAAATAAAATTTCAAATCTTGGAGGTAATTTATGGATTTTTGGTAGAGGTTT
TGGAGTGAATTGTACTGTTTGGGTAAGATATATTGATGATATTGGTTTTAATCAATGTGT
A----------
Length of 5' end seq. 661
3' end seq. ID FC-BT04Z
3' end seq. 
>FC-BT04Z.Seq
----------GAATGAATCCATCATCAATTAAATATACAGTTAATATTACAAGTTATTCA
TTCGCTCAAAATCTTAACCATCTTCAATTGATTATGTCTGCATCATTACAATCCTCTAAA
ACTGATGATATATGCTCTTCAAAATTATTTGGTAATACTAGCGATGGCGATAATTCAAAC
TTTATGAAACTAAAAGTAAATGATCATTCAGTATATGGTAGATTTATTAAACGTGCTATT
GTTGATAATAAAATTATCTCTGTCGATAATAGTATTTTAGATGATTCAATAAATCCAGAT
TCAAATTCTCATAAATCTGAAACATTTATTGGTATCTCAATTCCATTTTATAGTGATAGT
GTATTGGTTGATCCTGATTTCTCTCTCCTTATCGATAATAGTCCCGCATCTTCAAATGAT
GAAAATTCAATTTGTGCATCCTCTTCCTCAAAATTATCAAAAGTACAAATTGCTGGTATT
ATAATAGGTTCGGTTGGTTTTACTGCTGTGGCCATAATTTCAACTATTTACATTATTAGA
AAAAGAAAAGAACAACAAACAATTATAAACAAAATGAAGAGAGTTAGCCAATCAGTGAAT
TAGCCATCAAAAAATAAAAAAATAAAAAAAAAAATAAAAAAAAAAATAAAAAATAAAAAA
AATAAAAAAAAAAATAA
Length of 3' end seq. 667
Connected seq. ID FC-BT04P
Connected seq. 
>FC-BT04P.Seq
AAATAGTGCTACCTTTATAAAATATATGGACTTATCAGATTCAGGTCCTATATTTTTTAG
AACTATTACAAATCCATTCATATATTTTTACAATGATACAAATATTAATAAGATTTCCAT
TACTTGTAAAAATGAAATTTTTGGTTCAAATTCTATACCACCACAATTATTATCATTTTC
TTCCTCAACAAGCCAATTGGATGTTGGATTAATCAATAAAGTTGATTTTGATTTTGATTC
ATTTGATGATTTAGGTATTAAAGAAAATCAATTCCCAATTGTTTATCTTTCAACAAGAAA
ATATGAAACCATTCAATGTATTTCAAGGAACACTTCAATTTTTGATAAATCTACAAGATT
TAGATGTTCAATTGAAATTCCAATTGGATTTGGATATCCAAATGGAATTTTATTATCAGT
GTATGGTTTTATAAATAATGGTGGTTATTTTAGTGGTTTTTGTTCACAACAATTACTTGA
AATGAATTTTTCAAATTTTATCTCAACTAATGGCACATTTACACTTGATCAACCATATAT
TAAAAGTTCAAATAAAATTTCAAATCTTGGAGGTAATTTATGGATTTTTGGTAGAGGTTT
TGGAGTGAATTGTACTGTTTGGGTAAGATATATTGATGATATTGGTTTTAATCAATGTGT
A----------GAATGAATCCATCATCAATTAAATATACAGTTAATATTACAAGTTATTC
ATTCGCTCAAAATCTTAACCATCTTCAATTGATTATGTCTGCATCATTACAATCCTCTAA
AACTGATGATATATGCTCTTCAAAATTATTTGGTAATACTAGCGATGGCGATAATTCAAA
CTTTATGAAACTAAAAGTAAATGATCATTCAGTATATGGTAGATTTATTAAACGTGCTAT
TGTTGATAATAAAATTATCTCTGTCGATAATAGTATTTTAGATGATTCAATAAATCCAGA
TTCAAATTCTCATAAATCTGAAACATTTATTGGTATCTCAATTCCATTTTATAGTGATAG
TGTATTGGTTGATCCTGATTTCTCTCTCCTTATCGATAATAGTCCCGCATCTTCAAATGA
TGAAAATTCAATTTGTGCATCCTCTTCCTCAAAATTATCAAAAGTACAAATTGCTGGTAT
TATAATAGGTTCGGTTGGTTTTACTGCTGTGGCCATAATTTCAACTATTTACATTATTAG
AAAAAGAAAAGAACAACAAACAATTATAAACAAAATGAAGAGAGTTAGCCAATCAGTGAA
TTAGCCATCAAAAAATAAAAAAATAAAAAAAAAAATAAAAAAAAAAATAAAAAATAAAAA
AAATAAAAAAAAAAATAA
Length of connected seq. 1328
Full length Seq ID -
Full length Seq. -
Length of full length seq. -