FC-BT03
Library FC
(Link to library)
Clone ID FC-BT03
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15225-1
Original site URL
Representative seq. ID FC-BT03E
(Link to Original site)
Representative DNA sequence
>FC-BT03 (FC-BT03Q) /CSM/FC/FC-BT/FC-BT03Q.Seq.d/
AGGAAATGAACAAGCAAAAAAAGTTTCTAAAACCATTTCAAAAGGTGCACCAACAGAAAT
CAAAAAAATAACAAAATCAAATAAATTAACAAAAGATGAAAAACCATTATCACCTGTATC
AGAAACATTAAAATCAAAAAAAAAAGGAACCACAAAAACTACTACTACTACTACTACAAC
AACAACAACACCAACAGAAACAGAAACAAAAATAACAAAATCAAATAAATTAACAAAAGA
TGAAAAACCATTATCACCTGCATCAGAAGATATAGATTTAGATTCATTATTTGATTTAAA
AAAACAAAAAAGAAAAGAAAATAAAGTTATTAAACAACAAGAATTAAAAGAAAAAGAAAT
TGAGGAAGCAACCACAAAGATTTCAAAGAAAAAGAAAAATGTAGATGATAAAGATGACTT
TTTTGATAGTAGAGGTGTTAATTTCAAAGAACCAAAAATAATAGACGGCTTACCAGTTTT
TAGTGAAGAAGAATTAGGTTTAAATAAACCATATGCTGATGGTGAAACTTCTGAATGTCC
ATTTGATTGTAATTGTTGTTAATAATTAGTGTTTGGAAAAAAAGTGTTAATAAAAAAAAA
AATAAAAAAATTTTGTAAAAATAAA
sequence update 1998. 5.14
Translated Amino Acid sequence
GNEQAKKVSKTISKGAPTEIKKITKSNKLTKDEKPLSPVSETLKSKKKGTTKTTTTTTTT
TTTPTETETKITKSNKLTKDEKPLSPASEDIDLDSLFDLKKQKRKENKVIKQQELKEKEI
EEATTKISKKKKNVDDKDDFFDSRGVNFKEPKIIDGLPVFSEEELGLNKPYADGETSECP
FDCNCC**lvfgkkvlikkkikkfcknk


Translated Amino Acid sequence (All Frames)
Frame A:
rk*tskksf*nhfkrctnrnqknnkik*inkr*ktiitcirnikikkkrnhknyyyyyyn
nnntnrnrnknnkik*inkr*ktiitcirryrfrfii*fkktkkkrk*sy*ttrikrkrn
*gsnhkdfkekekcr**r*lf***rc*fqrtknnrrltsf**rrirfk*tic*w*nf*ms
i*l*llliisvwkksvnkkknkkil*k*


Frame B:
GNEQAKKVSKTISKGAPTEIKKITKSNKLTKDEKPLSPVSETLKSKKKGTTKTTTTTTTT
TTTPTETETKITKSNKLTKDEKPLSPASEDIDLDSLFDLKKQKRKENKVIKQQELKEKEI
EEATTKISKKKKNVDDKDDFFDSRGVNFKEPKIIDGLPVFSEEELGLNKPYADGETSECP
FDCNCC**lvfgkkvlikkkikkfcknk


Frame C:
emnkqkkflkpfqkvhqqkskk*qnqin*qkmknhyhlyqkh*nqkkkepqkllllllqq
qqhqqkqkqk*qnqin*qkmknhyhlhqki*i*ihyli*knkkekkikllnnkn*kkkkl
rkqpqrfqrkrkm*mikmtflivevlisknqk**tayqflvkkn*v*inhmlmvkllnvh
livivvnn*clekkc**kkk*knfvki


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-BT03 (FC-BT03Q) /CSM/FC/FC-BT/FC-BT03Q.Seq.d/ 351 8e-96
SSM865 (SSM865Q) /CSM/SS/SSM8-C/SSM865Q.Seq.d/ 38 0.16
SSI749 (SSI749Q) /CSM/SS/SSI7-C/SSI749Q.Seq.d/ 38 0.16
SSI581 (SSI581Q) /CSM/SS/SSI5-D/SSI581Q.Seq.d/ 38 0.16
SSG610 (SSG610Q) /CSM/SS/SSG6-A/SSG610Q.Seq.d/ 38 0.16
SSF579 (SSF579Q) /CSM/SS/SSF5-D/SSF579Q.Seq.d/ 38 0.16
SSC877 (SSC877Q) /CSM/SS/SSC8-D/SSC877Q.Seq.d/ 38 0.16
SLB850 (SLB850Q) /CSM/SL/SLB8-C/SLB850Q.Seq.d/ 38 0.16
CHR742 (CHR742Q) /CSM/CH/CHR7-B/CHR742Q.Seq.d/ 38 0.16
CFJ465 (CFJ465Q) /CSM/CF/CFJ4-C/CFJ465Q.Seq.d/ 38 0.16

own update 2004. 5.31
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC127488|AC127488.1 Homo sapiens chromosome 11 clone CTD-2024H8 map 11, LOW-PASS SEQUENCE SAMPLING. 42 0.001 2
AC124025|AC124025.1 Mus musculus chromosome X clone RP21-108Q19, complete sequence. 44 2.3 1
AC124024|AC124024.1 Mus musculus chromosome X clone RP21-83F5, complete sequence. 44 2.3 1
AL731844|AL731844.17 Mouse DNA sequence from clone RP23-153K9 on chromosome X. 44 2.3 1
AA675749|AA675749.1 MBAFCW4C11T3 Brugia malayi adult female cDNA (SAW96MLW-BmAF) Brugia malayi cDNA clone AFCW4C11 5', mRNA sequence. 44 2.3 1
AX654028|AX654028.1 Sequence 3898 from Patent WO03000898. 40 2.4 2
AK068114|AK068114.1 Oryza sativa (japonica cultivar-group) cDNA clone:J013133O21, full insert sequence. 40 2.9 2
AK073390|AK073390.1 Oryza sativa (japonica cultivar-group) cDNA clone:J033040M05, full insert sequence. 40 3.4 2
AC002403|AC002403.1 Human Chromosome 11p15.5 pac pDJ608b4, complete sequence. 42 8.2 2
AC124055|AC124055.6 Homo sapiens chromosome 11, clone RP4-608B4, complete sequence. 42 8.3 2
dna update 2003.12.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AL163814_15(AL163814|pid:none) Arabidopsis thaliana DNA chromoso... 42 0.011
(Q92346) RecName: Full=Uncharacterized protein C6G9.01c; &CU329... 37 0.46

protein update 2009. 7. 3
PSORT

psg: 0.75 gvh: 0.20 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.16 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 1.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
20.0 %: cytoplasmic
12.0 %: Golgi
8.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for FC-BT03 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-BT03E
Full length Seq.
>FC-BT03E.Seq
AGGAAATGAACAAGCAAAAAAAGTTTCTAAAACCATTTCAAAAGGTGCACCAACAGAAAT
CAAAAAAATAACAAAATCAAATAAATTAACAAAAGATGAAAAACCATTATCACCTGTATC
AGAAACATTAAAATCAAAAAAAAAAGGAACCACAAAAACTACTACTACTACTACTACAAC
AACAACAACACCAACAGAAACAGAAACAAAAATAACAAAATCAAATAAATTAACAAAAGA
TGAAAAACCATTATCACCTGCATCAGAAGATATAGATTTAGATTCATTATTTGATTTAAA
AAAACAAAAAAGAAAAGAAAATAAAGTTATTAAACAACAAGAATTAAAAGAAAAAGAAAT
TGAGGAAGCAACCACAAAGATTTCAAAGAAAAAGAAAAATGTAGATGATAAAGATGACTT
TTTTGATAGTAGAGGTGTTAATTTCAAAGAACCAAAAATAATAGACGGCTTACCAGTTTT
TAGTGAAGAAGAATTAGGTTTAAATAAACCATATGCTGATGGTGAAACTTCTGAATGTCC
ATTTGATTGTAATTGTTGTTAATAATTAGTGTTTGGAAAAAAAGTGTTAATAAAAAAAAA
AATAAAAAAATTTTGTAAAAATAAA
Length of full length seq. 625