FC-BS21
Library FC
(Link to library)
Clone ID FC-BS21
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15764-1
Original site URL
Representative seq. ID FC-BS21Z
(Link to Original site)
Representative DNA sequence
>FC-BS21 (FC-BS21Q) /CSM/FC/FC-BS/FC-BS21Q.Seq.d/
XXXXXXXXXXTAAACGTGGTAACATTGTCCAATCCCATCCAGCTCAAGAATATCAATTTG
TTCCAAAAACTCTCCACATCAAAGTCAACGAGTACATTCATTATCAATGGACAGGTTGTG
ATTTCAATCCACAAAACTATGATGGTACTGGTATCAAAGGTTCTGATCGTAGCAACATGT
GTCAAATTAAAACACTCAATCACAATTACCCAATGACCGACGATGAACTCAACGATGACA
ATGCCTTATTTGCCGATATGGAAACTAGACTTAGATTCGCTAGACTTGGCCAAAAGAGTT
GTTTAACCTATGATGAACTCATGACTAAAAACAATAACAACAAAGATGCCGTCGAAGTTG
ATCCACAAAATTGTATGGTCTTAAATAATGCTGGTACTCGTTTCAATGGTGGTGTCCAAA
AAATGTCAAAGACTGGTTCATACTATTACATGTCCACTCGTAATAACAACTTTTCCAATC
GTAATCAAAAAGGTGCCATCCACGTTGACCCATTATTAGCTGGCTGGCAAATTGGTCTCA
TTGCTTCTGGTTGTTCTTTAATCGTTATCATTTCAGCAACTGCAGGTTGTGTTACCTTTG
CTCGTTTCCATCCACATTCAGGTATGCATCGTGCTGTTTCAAAAGTACCAGGTCTCAAGA
GATTAGTTTAAATAAATTATTTAAAAAATATATCAACAACACCAAGATATTAAATAATAT
CAAAAAAGAAAAA
sequence update 1998. 5.12
Translated Amino Acid sequence
---KRGNIVQSHPAQEYQFVPKTLHIKVNEYIHYQWTGCDFNPQNYDGTGIKGSDRSNMC
QIKTLNHNYPMTDDELNDDNALFADMETRLRFARLGQKSCLTYDELMTKNNNNKDAVEVD
PQNCMVLNNAGTRFNGGVQKMSKTGSYYYMSTRNNNFSNRNQKGAIHVDPLLAGWQIGLI
ASGCSLIVIISATAGCVTFARFHPHSGMHRAVSKVPGLKRLV*inylknisttpry*iis
kkk


Translated Amino Acid sequence (All Frames)
Frame A:
---KRGNIVQSHPAQEYQFVPKTLHIKVNEYIHYQWTGCDFNPQNYDGTGIKGSDRSNMC
QIKTLNHNYPMTDDELNDDNALFADMETRLRFARLGQKSCLTYDELMTKNNNNKDAVEVD
PQNCMVLNNAGTRFNGGVQKMSKTGSYYYMSTRNNNFSNRNQKGAIHVDPLLAGWQIGLI
ASGCSLIVIISATAGCVTFARFHPHSGMHRAVSKVPGLKRLV*inylknisttpry*iis
kkk


Frame B:
---nvvtlsnpiqlkninlfqklstskststfiingqvvisihktmmvlvskvlivatcv
klkhsititq*ptmnstmtmpylpiwkldldsldlakrvv*pmmns*lktittkmpskli
hkivws*imlvlvsmvvskkcqrlvhtitcplvittfpivikkvpstlthy*lagklvsl
llvvl*slsfqqlqvvlpllvsihiqvcivlfqkyqvsrd*fk*ii*kiyqqhqdik*yq
krk


Frame C:
---tw*hcpipsssrisicsknsphqsqrvhslsmdrl*fqstkl*wywyqrf*s*qhvs
n*ntqsqlpndrr*tqr*qclicrygn*t*ir*twpkelfnl**thd*kq*qqrcrrs*s
tklyglk*cwysfqwwcpknvkdwfillhvhs**qlfqs*skrchpr*piiswlanwshc
fwlffnryhfsncrlcylcsfpstfryasccfkstrsqeislnklfkkyinntkilnnik
kek


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-BS21 (FC-BS21Q) /CSM/FC/FC-BS/FC-BS21Q.Seq.d/ 1409 0.0
VFI267 (VFI267Q) /CSM/VF/VFI2-C/VFI267Q.Seq.d/ 1348 0.0
SLA890 (SLA890Q) /CSM/SL/SLA8-D/SLA890Q.Seq.d/ 1100 0.0
SLA878 (SLA878Q) /CSM/SL/SLA8-D/SLA878Q.Seq.d/ 1090 0.0
SLD275 (SLD275Q) /CSM/SL/SLD2-D/SLD275Q.Seq.d/ 1049 0.0
SLG363 (SLG363Q) /CSM/SL/SLG3-C/SLG363Q.Seq.d/ 993 0.0
SLB584 (SLB584Q) /CSM/SL/SLB5-D/SLB584Q.Seq.d/ 852 0.0
SLH577 (SLH577Q) /CSM/SL/SLH5-D/SLH577Q.Seq.d/ 819 0.0
SLK551 (SLK551Q) /CSM/SL/SLK5-C/SLK551Q.Seq.d/ 710 0.0
VHP893 (VHP893Q) /CSM/VH/VHP8-D/VHP893Q.Seq.d/ 694 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL929204|AL929204.7 Zebrafish DNA sequence from clone CH211-138E4. 52 0.010 1
AC068792|AC068792.31 Homo sapiens 12 BAC RP11-771K4 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 40 0.052 3
AC096558|AC096558.1 Homo sapiens BAC clone RP11-186C15 from 2, complete sequence. 48 0.15 1
AC106880|AC106880.4 Homo sapiens BAC clone RP11-709E23 from 4, complete sequence. 48 0.15 1
AC131150|AC131150.8 Homo sapiens 3 BAC RP11-637J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 38 0.17 3
AC109438|AC109438.1 Homo sapiens chromosome 16 clone CTA-685D8, WORKING DRAFT SEQUENCE, 3 unordered pieces. 48 0.20 3
AC093737|AC093737.1 Homo sapiens chromosome 2 clone RP11-21M2, WORKING DRAFT SEQUENCE, 2 unordered pieces. 42 0.37 3
BZ613873|BZ613873.1 BrH143G23e Brassica rapa BAC library (BrH BAC) Brassica rapa subsp. pekinensis genomic clone BrH143G23, DNA sequence. 42 0.42 2
AC099664|AC099664.2 Homo sapiens chromosome 3 clone RP11-6B4, complete sequence. 38 0.43 2
AC007556|AC007556.3 Homo sapiens BAC clone RP11-18C9 from 2, complete sequence. 42 0.45 2
dna update 2003. 7.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB120173_1(AB120173|pid:none) Dictyostelium discoideum DD3-3 mRN... 458 e-128
BT045238_1(BT045238|pid:none) Salmo salar clone ssal-rgf-516-043... 39 0.12
AL034557_32(AL034557|pid:none) Plasmodium falciparum MAL4P1. &A... 39 0.16
CP000777_1280(CP000777|pid:none) Leptospira biflexa serovar Pato... 39 0.16
AX448559_1(AX448559|pid:none) Sequence 225 from Patent WO0224726... 36 1.0
(Q8NGN4) RecName: Full=Olfactory receptor 10G9; &AB065756_1(AB0... 36 1.0
AE014187_611(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 35 1.7
(P46468) RecName: Full=Putative cell division cycle ATPase; &AL... 35 2.3
(Q8T126) RecName: Full=Probable inactive serine/threonine-protei... 34 3.8
FM211046_18(FM211046|pid:none) Photorhabdus asymbiotica subsp. a... 33 6.5
protein update 2009. 4.14
PSORT

psg: 0.72 gvh: 0.11 alm: 0.27 top: 0.73 tms: 0.07 mit: 0.23 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for FC-BS21 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-BS21Z
3' end seq.
>FC-BS21Z.Seq
----------TAAACGTGGTAACATTGTCCAATCCCATCCAGCTCAAGAATATCAATTTG
TTCCAAAAACTCTCCACATCAAAGTCAACGAGTACATTCATTATCAATGGACAGGTTGTG
ATTTCAATCCACAAAACTATGATGGTACTGGTATCAAAGGTTCTGATCGTAGCAACATGT
GTCAAATTAAAACACTCAATCACAATTACCCAATGACCGACGATGAACTCAACGATGACA
ATGCCTTATTTGCCGATATGGAAACTAGACTTAGATTCGCTAGACTTGGCCAAAAGAGTT
GTTTAACCTATGATGAACTCATGACTAAAAACAATAACAACAAAGATGCCGTCGAAGTTG
ATCCACAAAATTGTATGGTCTTAAATAATGCTGGTACTCGTTTCAATGGTGGTGTCCAAA
AAATGTCAAAGACTGGTTCATACTATTACATGTCCACTCGTAATAACAACTTTTCCAATC
GTAATCAAAAAGGTGCCATCCACGTTGACCCATTATTAGCTGGCTGGCAAATTGGTCTCA
TTGCTTCTGGTTGTTCTTTAATCGTTATCATTTCAGCAACTGCAGGTTGTGTTACCTTTG
CTCGTTTCCATCCACATTCAGGTATGCATCGTGCTGTTTCAAAAGTACCAGGTCTCAAGA
GATTAGTTTAAATAAATTATTTAAAAAATATATCAACAACACCAAGATATTAAATAATAT
CAAAAAAGAAAAA
Length of 3' end seq. 723
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -