FC-BS16
Library FC
(Link to library)
Clone ID FC-BS16
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15105-1
Original site URL
Representative seq. ID FC-BS16E
(Link to Original site)
Representative DNA sequence
>FC-BS16 (FC-BS16Q) /CSM/FC/FC-BS/FC-BS16Q.Seq.d/
GAAGTTGCATTATTTGGTAAATGGTCATACTCTGGCGTTACTTGTCCAGATATCTCCTTA
CAAGATTACATCTGCGTTAAAAAGAATGTCTTCACTCCACATTCAGCAGGTAGATACAAC
AAAGTTAGATTCAGAAAGGCCCAATGCCCAATTGTTGAACGTCTTGCCAACAGTATGATG
ATGTTCGGTAGAAATGCTGGTAAAAAAGTCATGGCTGTCCGTATCATCGAACAAGCCTTC
GAAATCATCTACCTCTTAACCGATAAGAACCCACTCCAAGTTTTAGTCGAAGCTGTCATG
AACTCTGGTCCACGTGAAGATTCAACTCGTATTGGTTCAGCTGGTACTGTCAGACGTCAA
GCTGTCGATGTTTCCCCAATGAGACGTGTCAACCACGCTGTTTACCTCTTAACCCAAGGT
ACTCGTGCTGCTGCTTTCAGAAACATCAGAACTGTTGCTGAATGTTTAGCTGATGAATTA
ATCAATGCCTCAAAAGGTTCACCAAATTCCTACTCAATCAAACAAAAGGATGCTTTAGAA
CGTACCGCCAAATCCCATCGTTAAGCGATTCGAATATATTATATATTATTGTTTCTTTTT
AAAACCCCACAAGAAATAAACTATATAAAAAAAAAAGAAAATATAAATTAAAGTAAAAAA
AAAAAAAAAAA
sequence update 1998. 5.12
Translated Amino Acid sequence
EVALFGKWSYSGVTCPDISLQDYICVKKNVFTPHSAGRYNKVRFRKAQCPIVERLANSMM
MFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQ
AVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALE
RTAKSHR*airiyyillflfktpqeinyikkkenin*skkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
EVALFGKWSYSGVTCPDISLQDYICVKKNVFTPHSAGRYNKVRFRKAQCPIVERLANSMM
MFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQ
AVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALE
RTAKSHR*airiyyillflfktpqeinyikkkenin*skkkkk


Frame B:
klhylvnghtlallvqispykitsalkrmsslhiqqvdttkldserpnaqllnvlptv**
csvemlvkkswlsvssnkpskssts*pirthskf*skls*tlvhvkiqlvlvqlvlsdvk
lsmfpq*dvsttlfts*pkvlvlllsetselllnv*lmn*smpqkvhqiptqsnkrml*n
vppnpivkrfeyiiyycfflkphkk*ti*kkkki*ikvkkkkk


Frame C:
sciiw*mvilwrylsrylltrlhlr*keclhstfsr*iqqs*iqkgpmpnc*tscqqydd
vr*kcw*kshgcpyhrtslrnhlplnr*eptpsfsrschelwst*rfnsywfswycqtss
crcfpnetcqprclplnpryscccfqkhqncc*mfs**inqclkrftkfllnqtkgcfrt
yrqipslsdsnilyiivsf*nptrnklykkkrkyklk*kkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ269 (VSJ269Q) /CSM/VS/VSJ2-C/VSJ269Q.Seq.d/ 1241 0.0
VSH720 (VSH720Q) /CSM/VS/VSH7-A/VSH720Q.Seq.d/ 1241 0.0
VSE854 (VSE854Q) /CSM/VS/VSE8-C/VSE854Q.Seq.d/ 1241 0.0
FC-BS16 (FC-BS16Q) /CSM/FC/FC-BS/FC-BS16Q.Seq.d/ 1241 0.0
VSI164 (VSI164Q) /CSM/VS/VSI1-C/VSI164Q.Seq.d/ 1239 0.0
VSK446 (VSK446Q) /CSM/VS/VSK4-B/VSK446Q.Seq.d/ 1235 0.0
VSF223 (VSF223Q) /CSM/VS/VSF2-A/VSF223Q.Seq.d/ 1235 0.0
FC-078 (FC-078Q) /CSM/CG/CG-FC/FC-078Q.Seq.d/ 1233 0.0
FC-AD21 (FC-AD21Q) /CSM/FC/FC-AD/FC-AD21Q.Seq.d/ 1229 0.0
FC-AD07 (FC-AD07Q) /CSM/FC/FC-AD/FC-AD07Q.Seq.d/ 1229 0.0

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AQ450188|AQ450188.1 500008H09.x1 CpIOWAM13mp18gDNA1 Cryptosporidium parvum genomic similar to 40S ribosomal protein S5, genomic survey sequence. 107 7e-27 3
BX538352|BX538352.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 3/4. 107 3e-26 2
CD450618|CD450618.1 USDA-FP_102581 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-35_F01 5', mRNA sequence. 72 9e-25 4
AX489078|AX489078.1 Sequence 6378 from Patent WO02053728. 72 2e-22 3
CD421166|CD421166.1 ku80d03.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:RS5_CAEEL P49041 PROBABLE 40S RIBOSOMAL PROTEIN S5. [1] ;, mRNA sequence. 64 2e-21 3
AA532240|AA532240.1 CpEST.520 uniZAPCpIOWAsporoLib3 Cryptosporidium parvum cDNA 5' similar to 40s ribosomal protein S5, mRNA sequence. 107 4e-21 2
BG301820|BG301820.1 kt05h01.y1 Strongyloides ratti L3 adult SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RS5_CAEEL P49041 PROBABLE 40S RIBOSOMAL PROTEIN S5. [1] ;, mRNA sequence. 64 8e-21 3
BG301832|BG301832.1 kt06a05.y1 Strongyloides ratti L3 adult SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RS5_CAEEL P49041 PROBABLE 40S RIBOSOMAL PROTEIN S5. [1] ;, mRNA sequence. 64 9e-21 3
BG301645|BG301645.1 kt03g01.y1 Strongyloides ratti L1 SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RS5_CAEEL P49041 PROBABLE 40S RIBOSOMAL PROTEIN S5. [1] ;, mRNA sequence. 64 1e-20 3
BI450937|BI450937.1 kt79e06.y4 Strongyloides ratti L2 SL1 TOPO v2 Strongyloides ratti cDNA 5' similar to SW:RS5_CAEEL P49041 PROBABLE 40S RIBOSOMAL PROTEIN S5. [1] ;, mRNA sequence. 64 1e-20 3
dna update 2003.12.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54MA6) RecName: Full=40S ribosomal protein S5; 371 e-101
AY961565_1(AY961565|pid:none) Lysiphlebus testaceipes ribosomal ... 271 1e-71
AY961522_1(AY961522|pid:none) Lysiphlebus testaceipes ribosomal ... 271 2e-71
AK002235_1(AK002235|pid:none) Mus musculus adult male kidney cDN... 270 4e-71
(P46782) RecName: Full=40S ribosomal protein S5; Contains: Rec... 270 4e-71
AY891473_1(AY891473|pid:none) Synthetic construct Homo sapiens c... 270 4e-71
AB291558_1(AB291558|pid:none) Solea senegalensis rpS5 mRNA for r... 269 5e-71
AF402813_1(AF402813|pid:none) Ictalurus punctatus 40S ribosomal ... 269 5e-71
BT079861_1(BT079861|pid:none) Esox lucius clone eluc-evq-524-167... 269 6e-71
FJ196315_1(FJ196315|pid:none) Auxenochlorella protothecoides rib... 268 8e-71
protein update 2009. 7. 3
PSORT

psg: 0.85 gvh: 0.44 alm: 0.36 top: 0.47 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

84.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: nuclear

>> prediction for FC-BS16 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-BS16E
Full length Seq.
>FC-BS16E.Seq
GAAGTTGCATTATTTGGTAAATGGTCATACTCTGGCGTTACTTGTCCAGATATCTCCTTA
CAAGATTACATCTGCGTTAAAAAGAATGTCTTCACTCCACATTCAGCAGGTAGATACAAC
AAAGTTAGATTCAGAAAGGCCCAATGCCCAATTGTTGAACGTCTTGCCAACAGTATGATG
ATGTTCGGTAGAAATGCTGGTAAAAAAGTCATGGCTGTCCGTATCATCGAACAAGCCTTC
GAAATCATCTACCTCTTAACCGATAAGAACCCACTCCAAGTTTTAGTCGAAGCTGTCATG
AACTCTGGTCCACGTGAAGATTCAACTCGTATTGGTTCAGCTGGTACTGTCAGACGTCAA
GCTGTCGATGTTTCCCCAATGAGACGTGTCAACCACGCTGTTTACCTCTTAACCCAAGGT
ACTCGTGCTGCTGCTTTCAGAAACATCAGAACTGTTGCTGAATGTTTAGCTGATGAATTA
ATCAATGCCTCAAAAGGTTCACCAAATTCCTACTCAATCAAACAAAAGGATGCTTTAGAA
CGTACCGCCAAATCCCATCGTTAAGCGATTCGAATATATTATATATTATTGTTTCTTTTT
AAAACCCCACAAGAAATAAACTATATAAAAAAAAAAGAAAATATAAATTAAAGTAAAAAA
AAAAAAAAAAA
Length of full length seq. 671