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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BS13
Library FC
(Link to library)
Clone ID FC-BS13
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15818-1
Original site URL
Representative seq. ID FC-BS13P
(Link to Original site)
Representative DNA sequence 
>FC-BS13 (FC-BS13Q) /CSM/FC/FC-BS/FC-BS13Q.Seq.d/
ATCCTGTTCTTTAGAATTTTTAGGTTCAATTAATACTGGTAATTCAACTACGACAACAAC
TACAACTACTAAATCAAATAATCAAAGAATGTATAAAACAATTCGTATGAAAAAGAATGG
TGGTATGAAAATGGGTGGTGATATAATGTTAAATTATATGGGTGGTAATAATGGTAATAA
TAATGATACTATAGCAGCAACAAGGACAACAACAACAACAACAACACCAGAGAGTTCTTT
AGAATTATTACCAAATACAACAGAGCAAGCATCATCAACAAATTCATTAACTGCAATGAA
TATTCAAACAAATGCACATTCAACTCATGGTAATACTTTTGGTGCATCATTTAATCGTTC
AACAAGTAGTCAAGATATTATTGTTAGTGGTACTGCAACCACTTCAAAATCATCAATGGC
AAAATTGGGTGCAAACTTTTTCCTTACACCTGATCAACAACATGCTTTAGCTTCAACTTC
AAATTTATCATCATCAACTAATAATAACTCTGCCACTGCTACTACCACTGCTACTACCAC
CACCACCACCACTGGTGTAATAAAGATAATATTAATGATATTATGCAATTCCCATCAACA
CCTGTATATCTTACAAATTCACCAAAAACATTGGAAXXXXXXXXXXGCTGATCAAGAAAA
GAAATTAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAACAACCACCACCAACAAATAATGT
ATCCGTTAAAAAAGAAAAGGAAAAAGAAAAAGAAAAGGAAAAAGAAAAAGAAAAAGAAAA
AGAAAAAGAAAAAGAAAAAGAAAATAATTTAAATTCAAGTGTAAATAATAATAATAATAA
TAATAATAATACCACACCAACTAAAGGTTTGGTTGATTCAACATCATCATCATCAAATAA
TTCAAGTAATCCTAGTAGTTTAAGTAATAGTCAGGAAGGTTCAAATTTACAATCTTCAAA
GTCAAATCCAAACTTTAAAGAAAGTGACACACAATTACCAACTTCATCATCACCACCACA
TCTTTCTCATATTGTCGAAAATAATTCAGTCTCTTCAACTTAATCTCTTTCATCTTCAAA
TTCAACAAATTCAACTCGATCACCATCATTATCTAGTCAAAAAGATAAAGAAACAATTAA
TAAGAGAAAATCATTATTTTTTGGAAAATCATAAATACATAGATAGATATTAATCAAAAA
AAAAAAAAAAA
sequence update 1998. 5.18
Translated Amino Acid sequence 
SCSLEFLGSINTGNSTTTTTTTTKSNNQRMYKTIRMKKNGGMKMGGDIMLNYMGGNNGNN
NDTIAATRTTTTTTTPESSLELLPNTTEQASSTNSLTAMNIQTNAHSTHGNTFGASFNRS
TSSQDIIVSGTATTSKSSMAKLGANFFLTPDQQHALASTSNLSSSTNNNSATATTTATTT
TTTTGVIKIILMILCNSHQHLYILQIHQKHW---

---ADQEKKLKEKEKEKEKEQPPPTNNVSVKKEKEKEKEKEKEKEKEKEKEKEKENNLNS
SVNNNNNNNNNTTPTKGLVDSTSSSSNNSSNPSSLSNSQEGSNLQSSKSNPNFKESDTQL
PTSSSPPHLSHIVENNSVSST*slsssnstnstrspslssqkdketinkrkslffgks*i
hr*ilikkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ilffrifrfn*yw*fnydnnyny*ik*sknv*nnsyekewwyengw*ynvklygw**w**
**yyssnkdnnnnnntreffriitkynrasiinkfincneysnkctfnsw*yfwcii*sf
nk*sryyc*wycnhfkiingkigcklfpyt*sttcfsfnfkfiiin***lchcyyhcyyh
hhhhwcnkdnindimqfpstpvyltnspktle---

---ADQEKKLKEKEKEKEKEQPPPTNNVSVKKEKEKEKEKEKEKEKEKEKEKEKENNLNS
SVNNNNNNNNNTTPTKGLVDSTSSSSNNSSNPSSLSNSQEGSNLQSSKSNPNFKESDTQL
PTSSSPPHLSHIVENNSVSST*slsssnstnstrspslssqkdketinkrkslffgks*i
hr*ilikkkkk

Frame B:
SCSLEFLGSINTGNSTTTTTTTTKSNNQRMYKTIRMKKNGGMKMGGDIMLNYMGGNNGNN
NDTIAATRTTTTTTTPESSLELLPNTTEQASSTNSLTAMNIQTNAHSTHGNTFGASFNRS
TSSQDIIVSGTATTSKSSMAKLGANFFLTPDQQHALASTSNLSSSTNNNSATATTTATTT
TTTTGVIKIILMILCNSHQHLYILQIHQKHW---

---likkrn*kkkkkkkkknnhhqqimyplkkkrkkkkkrkkkkkkkkkkkkkkkii*iq
v*iiiiiiiiiphqlkvwliqhhhhqiiqvilvv*vivrkvqiynlqsqiqtlkkvthny
qlhhhhhiflilskiiqslqlnlfhlqiqqiqldhhhylvkkikkqlirenhyflenhky
idry*skkkkk

Frame C:
pvl*nf*vqlilviqlrqqlqllnqiikecikqfv*krmvv*kwvvi*c*iiwvvimvii
mil*qqqgqqqqqqhqrvl*nyyqiqqskhhqqih*lq*ifkqmhiqlmvillvhhlivq
qvvkilllvvlqplqnhqwqnwvqtfslhlinnml*lqlqiyhhqliitlplllplllpp
ppplv**r*y**yyaipintcisykftknig---

---*srkeikrkrkrkrkrttttnk*cir*krkgkrkrkgkrkrkrkrkrkrkrk*fkfk
ck********yhtn*rfg*fniiiik*fk*s**fk**sgrfkftifkvkskl*rk*htit
nfiitttsfsycrk*fslfnlisfifkfnkfnsitiii*skr*rnn**ekiiifwkiint
*idinqkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BS13 (FC-BS13Q) /CSM/FC/FC-BS/FC-BS13Q.Seq.d/                      682   0.0
SSC281 (SSC281Q) /CSM/SS/SSC2-D/SSC281Q.Seq.d/                        658   0.0
VHC426 (VHC426Q) /CSM/VH/VHC4-B/VHC426Q.Seq.d/                        567   e-160
SHL335 (SHL335Q) /CSM/SH/SHL3-B/SHL335Q.Seq.d/                        567   e-160
SHJ804 (SHJ804Q) /CSM/SH/SHJ8-A/SHJ804Q.Seq.d/                        567   e-160
SHE742 (SHE742Q) /CSM/SH/SHE7-B/SHE742Q.Seq.d/                        567   e-160
SHD170 (SHD170Q) /CSM/SH/SHD1-C/SHD170Q.Seq.d/                        567   e-160
SFE464 (SFE464Q) /CSM/SF/SFE4-C/SFE464Q.Seq.d/                        567   e-160
CHM359 (CHM359Q) /CSM/CH/CHM3-C/CHM359Q.Seq.d/                        567   e-160
CHL542 (CHL542Q) /CSM/CH/CHL5-B/CHL542Q.Seq.d/                        567   e-160
own update 2002.10. 7
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   129  2e-30  10
U23477|U23477.1 Dictyostelium discoideum phosphatidylinositol-4,5-diphosphate 3-kinase (PIK2) mRNA, complete cds.    40  1e-07  7
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    44  5e-07  10
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40  6e-07  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40  1e-06  9
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    44  4e-06  8
AF238312|AF238312.1 Dictyostelium discoideum putative serine-threonine protein kinase MkcB (mkcB) gene, complete cds.    56  1e-05  3
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    46  1e-05  15
AY159036|AY159036.1 Dictyostelium discoideum LvsE (lvsE) gene, partial cds.    40  4e-05  5
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    42  3e-04  8
dna update 2003. 7.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF177464_1(AF177464|pid:none) Drosophila melanogaster Tob homolo...    35   3.9
BT010303_1(BT010303|pid:none) Drosophila melanogaster LD04013 fu...    35   3.9
CR382132_181(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    34   8.7
protein update 2008.11.11
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.12
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: mitochondrial
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for FC-BS13 is nuc
5' end seq. ID FC-BS13F
5' end seq. 
>FC-BS13F.Seq
ATCCTGTTCTTTAGAATTTTTAGGTTCAATTAATACTGGTAATTCAACTACGACAACAAC
TACAACTACTAAATCAAATAATCAAAGAATGTATAAAACAATTCGTATGAAAAAGAATGG
TGGTATGAAAATGGGTGGTGATATAATGTTAAATTATATGGGTGGTAATAATGGTAATAA
TAATGATACTATAGCAGCAACAAGGACAACAACAACAACAACAACACCAGAGAGTTCTTT
AGAATTATTACCAAATACAACAGAGCAAGCATCATCAACAAATTCATTAACTGCAATGAA
TATTCAAACAAATGCACATTCAACTCATGGTAATACTTTTGGTGCATCATTTAATCGTTC
AACAAGTAGTCAAGATATTATTGTTAGTGGTACTGCAACCACTTCAAAATCATCAATGGC
AAAATTGGGTGCAAACTTTTTCCTTACACCTGATCAACAACATGCTTTAGCTTCAACTTC
AAATTTATCATCATCAACTAATAATAACTCTGCCACTGCTACTACCACTGCTACTACCAC
CACCACCACCACTGGTGTAATAAAGATAATATTAATGATATTATGCAATTCCCATCAACA
CCTGTATATCTTACAAATTCACCAAAAACATTGGAA----------
Length of 5' end seq. 636
3' end seq. ID FC-BS13Z
3' end seq. 
>FC-BS13Z.Seq
----------GCTGATCAAGAAAAGAAATTAAAAGAAAAAGAAAAAGAAAAAGAAAAAGA
ACAACCACCACCAACAAATAATGTATCCGTTAAAAAAGAAAAGGAAAAAGAAAAAGAAAA
GGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAATAATTTAAATTC
AAGTGTAAATAATAATAATAATAATAATAATAATACCACACCAACTAAAGGTTTGGTTGA
TTCAACATCATCATCATCAAATAATTCAAGTAATCCTAGTAGTTTAAGTAATAGTCAGGA
AGGTTCAAATTTACAATCTTCAAAGTCAAATCCAAACTTTAAAGAAAGTGACACACAATT
ACCAACTTCATCATCACCACCACATCTTTCTCATATTGTCGAAAATAATTCAGTCTCTTC
AACTTAATCTCTTTCATCTTCAAATTCAACAAATTCAACTCGATCACCATCATTATCTAG
TCAAAAAGATAAAGAAACAATTAATAAGAGAAAATCATTATTTTTTGGAAAATCATAAAT
ACATAGATAGATATTAATCAAAAAAAAAAAAAAAA
Length of 3' end seq. 565
Connected seq. ID FC-BS13P
Connected seq. 
>FC-BS13P.Seq
ATCCTGTTCTTTAGAATTTTTAGGTTCAATTAATACTGGTAATTCAACTACGACAACAAC
TACAACTACTAAATCAAATAATCAAAGAATGTATAAAACAATTCGTATGAAAAAGAATGG
TGGTATGAAAATGGGTGGTGATATAATGTTAAATTATATGGGTGGTAATAATGGTAATAA
TAATGATACTATAGCAGCAACAAGGACAACAACAACAACAACAACACCAGAGAGTTCTTT
AGAATTATTACCAAATACAACAGAGCAAGCATCATCAACAAATTCATTAACTGCAATGAA
TATTCAAACAAATGCACATTCAACTCATGGTAATACTTTTGGTGCATCATTTAATCGTTC
AACAAGTAGTCAAGATATTATTGTTAGTGGTACTGCAACCACTTCAAAATCATCAATGGC
AAAATTGGGTGCAAACTTTTTCCTTACACCTGATCAACAACATGCTTTAGCTTCAACTTC
AAATTTATCATCATCAACTAATAATAACTCTGCCACTGCTACTACCACTGCTACTACCAC
CACCACCACCACTGGTGTAATAAAGATAATATTAATGATATTATGCAATTCCCATCAACA
CCTGTATATCTTACAAATTCACCAAAAACATTGGAA----------GCTGATCAAGAAAA
GAAATTAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAACAACCACCACCAACAAATAATGT
ATCCGTTAAAAAAGAAAAGGAAAAAGAAAAAGAAAAGGAAAAAGAAAAAGAAAAAGAAAA
AGAAAAAGAAAAAGAAAAAGAAAATAATTTAAATTCAAGTGTAAATAATAATAATAATAA
TAATAATAATACCACACCAACTAAAGGTTTGGTTGATTCAACATCATCATCATCAAATAA
TTCAAGTAATCCTAGTAGTTTAAGTAATAGTCAGGAAGGTTCAAATTTACAATCTTCAAA
GTCAAATCCAAACTTTAAAGAAAGTGACACACAATTACCAACTTCATCATCACCACCACA
TCTTTCTCATATTGTCGAAAATAATTCAGTCTCTTCAACTTAATCTCTTTCATCTTCAAA
TTCAACAAATTCAACTCGATCACCATCATTATCTAGTCAAAAAGATAAAGAAACAATTAA
TAAGAGAAAATCATTATTTTTTGGAAAATCATAAATACATAGATAGATATTAATCAAAAA
AAAAAAAAAAA
Length of connected seq. 1201
Full length Seq ID -
Full length Seq. -
Length of full length seq. -