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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BS12
Library FC
(Link to library)
Clone ID FC-BS12
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16022-1
Original site URL
Representative seq. ID FC-BS12P
(Link to Original site)
Representative DNA sequence 
>FC-BS12 (FC-BS12Q) /CSM/FC/FC-BS/FC-BS12Q.Seq.d/
GAGAGATAAAAATGTTAAGAGGTATTGAAATTAGAGGAAAAGTTGATAAAAATGTTAAAT
CAATATTAACAGAAGAGTGTTTAACATTTTTAGGAGAATTAGAAAGAAGATTTGGAGGTA
TTAGAAAGAACTTATTACAAAAGAGATTAGATAGACAAATTGATATTAATAATGGTATTT
TACCAAGTTTGTTAAAGGATAGCGATTGTAAGAGAGCCACAGATAAGAATTGGAAATGTT
CTTCAGTACCATTAGAAATTCAAGATCGTCGTGTTGAAATTACCGGACCTACCGATAGAA
AGATGGTAATCAATGCATTGAATTCAGGTGCTAAAGTATTTATGGCAGATTTCGAGGATG
CAAATTGCCCAAATTGGGAAAACTCGATCCACGGTCAACAAAATATGATTGATGCAAACA
ATAGAACCATTTCATTCACTTCAGCAGAGGGTAGAAAATATGAATTAAATAAACAGGTGG
CAGTACTTTTCGTCAGACCAAGAGGTTGGCATTTAAATGAAGATCATTTAGCTATTGATG
GTCTTTCAATGTCTGXXXXXXXXXXTTTTTCTCCAAAATTATAAAAAAAAAAAAAAAAAA
ATAAATAATAAAATAAAATTAATTAATAAATAAGAATAATCATGAGTTTCCCCAAAAATA
ACCAAAAAAACCTTTGATAAAAATAAAATTATTATTAAAATATTTTATTTTTTATTTTCA
TCTTTTATTGCTGGAGTATACCATGTTTCATTTTCCAAATCAGATAATCCTGGCAAACTT
TTGATAAAATAAATATTAAAATAAAAATAAAATAAATATTCTTTGATTATTAAAAA
sequence update 1998. 5.18
Translated Amino Acid sequence 
EIKMLRGIEIRGKVDKNVKSILTEECLTFLGELERRFGGIRKNLLQKRLDRQIDINNGIL
PSLLKDSDCKRATDKNWKCSSVPLEIQDRRVEITGPTDRKMVINALNSGAKVFMADFEDA
NCPNWENSIHGQQNMIDANNRTISFTSAEGRKYELNKQVAVLFVRPRGWHLNEDHLAIDG
LSMS---

---FLQNYKKKKKKINNKIKLINK*e*s*vspkitkktfdknkiiikifyflfssfiagv
yhvsfsksdnpgkllik*ilk*k*nkysliik
Translated Amino Acid sequence (All Frames) 
Frame A:
er*kc*evlkleeklikmlnqy*qksv*hf*en*kedlevlertyykrd*idklilimvf
yqvc*riaivrepqirignvlqyh*kfkivvlklpdlpierw*smh*iqvlkylwqisrm
qiaqigktrstvnki*lmqtiepfhslqqrvenmn*inrwqyfssdqevgi*mkii*llm
vfqcl---

---ffskiikkkkkk*iik*n*linknnhefpqk*pkkplikiklllkyfifyfhlllle
ytmfhfpnqiilanf**nky*nknkinil*llk

Frame B:
rdknvkry*n*rks**kc*ininrrvfnifrrirkkiwry*kelitkeir*tn*y**wyf
tkfvkg*rl*eshr*elemffstirnsrssc*nyrtyr*kdgnqciefrc*siygrfrgc
klpklgkldprstkyd*ckq*nhfihfsrg*ki*ik*tggstfrqtkrlafk*rsfsy*w
sfnv---

---fspkl*kkkkknk**nkin**iriimsfpknnqknl**k*nyy*nilffififycws
ipcfifqir*swqtfdkinikikik*iffdy*k

Frame C:
EIKMLRGIEIRGKVDKNVKSILTEECLTFLGELERRFGGIRKNLLQKRLDRQIDINNGIL
PSLLKDSDCKRATDKNWKCSSVPLEIQDRRVEITGPTDRKMVINALNSGAKVFMADFEDA
NCPNWENSIHGQQNMIDANNRTISFTSAEGRKYELNKQVAVLFVRPRGWHLNEDHLAIDG
LSMS---

---FLQNYKKKKKKINNKIKLINK*e*s*vspkitkktfdknkiiikifyflfssfiagv
yhvsfsksdnpgkllik*ilk*k*nkysliik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BS12 (FC-BS12Q) /CSM/FC/FC-BS/FC-BS12Q.Seq.d/                     1100   0.0
VSD839 (VSD839Q) /CSM/VS/VSD8-B/VSD839Q.Seq.d/                       1084   0.0
VFL317 (VFL317Q) /CSM/VF/VFL3-A/VFL317Q.Seq.d/                       1084   0.0
VFI785 (VFI785Q) /CSM/VF/VFI7-D/VFI785Q.Seq.d/                       1084   0.0
VFA277 (VFA277Q) /CSM/VF/VFA2-D/VFA277Q.Seq.d/                       1084   0.0
SFF709 (SFF709Q) /CSM/SF/SFF7-A/SFF709Q.Seq.d/                       1084   0.0
VFJ631 (VFJ631Q) /CSM/VF/VFJ6-B/VFJ631Q.Seq.d/                       1070   0.0
VFJ638 (VFJ638Q) /CSM/VF/VFJ6-B/VFJ638Q.Seq.d/                        969   0.0
AFK696 (AFK696Q) /CSM/AF/AFK6-D/AFK696Q.Seq.d/                        969   0.0
VFB391 (VFB391Q) /CSM/VF/VFB3-D/VFB391Q.Seq.d/                        965   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.  1082  0.0  5
BI746163|BI746163.1 rm23e11.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to TR:O17353 O17353 C05E4.9 PROTEIN. [1] ;, mRNA sequence.    94  3e-15  1
BI747274|BI747274.1 rm38b02.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to TR:O17353 O17353 C05E4.9 PROTEIN. [1] ;, mRNA sequence.    94  3e-15  1
BI501917|BI501917.1 rm06g09.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to TR:O17353 O17353 C05E4.9 PROTEIN. [1] ;, mRNA sequence.    94  3e-15  1
BI747257|BI747257.1 rm37h05.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to TR:O17353 O17353 C05E4.9 PROTEIN. [1] ;, mRNA sequence.    94  3e-15  1
BI745267|BI745267.1 rk98c10.y1 Meloidogyne javanica egg pAMP1 v6 Chiapelli McCarter Meloidogyne javanica cDNA 5' similar to TR:O17353 O17353 C05E4.9 PROTEIN. [1] ;, mRNA sequence.    86  8e-13  1
AF223418|AF223418.1 Asparagus officinalis isolate pTIP45 malate synthase mRNA, complete cds.    70  5e-08  1
BG736272|BG736272.1 rk54a08.y1 Meloidogyne javanica egg pAMP1 v6 Chiapelli McCarter Meloidogyne javanica cDNA 5' similar to TR:O17353 O17353 C05E4.9 PROTEIN. [1] ;, mRNA sequence.    70  5e-08  1
BI502145|BI502145.1 kt86a04.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:O17353 O17353 C05E4.9 PROTEIN. [1] ;, mRNA sequence.    56  4e-06  2
BI946137|BI946137.1 su65f12.y1 Gm-c1069 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1069-1824 5' similar to SW:MASY_SOYBN P45458 MALATE SYNTHASE, GLYOXYSOMAL ;, mRNA sequence.    50  6e-05  2
dna update 2003. 7.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T2K9) RecName: Full=Malate synthase;          EC=2.3.3.9;  &A...   367   e-100
CP000909_2910(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...   186   8e-46
AP006840_589(AP006840|pid:none) Symbiobacterium thermophilum IAM...   184   3e-45
AE016825_3304(AE016825|pid:none) Chromobacterium violaceum ATCC ...   182   1e-44
CP000473_3070(CP000473|pid:none) Solibacter usitatus Ellin6076, ...   181   2e-44
CP000804_4261(CP000804|pid:none) Roseiflexus castenholzii DSM 13...   181   2e-44
CP001337_3665(CP001337|pid:none) Chloroflexus aggregans DSM 9485...   181   2e-44
CP000875_1012(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...   181   3e-44
AY972100_9(AY972100|pid:none) Rhodothermus marinus strain PRQ 62...   181   3e-44
CP000485_938(CP000485|pid:none) Bacillus thuringiensis str. Al H...   178   2e-43
protein update 2009. 4.14
PSORT 

 psg: 0.40  gvh: 0.35  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.18  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for FC-BS12 is cyt
5' end seq. ID FC-BS12F
5' end seq. 
>FC-BS12F.Seq
GAGAGATAAAAATGTTAAGAGGTATTGAAATTAGAGGAAAAGTTGATAAAAATGTTAAAT
CAATATTAACAGAAGAGTGTTTAACATTTTTAGGAGAATTAGAAAGAAGATTTGGAGGTA
TTAGAAAGAACTTATTACAAAAGAGATTAGATAGACAAATTGATATTAATAATGGTATTT
TACCAAGTTTGTTAAAGGATAGCGATTGTAAGAGAGCCACAGATAAGAATTGGAAATGTT
CTTCAGTACCATTAGAAATTCAAGATCGTCGTGTTGAAATTACCGGACCTACCGATAGAA
AGATGGTAATCAATGCATTGAATTCAGGTGCTAAAGTATTTATGGCAGATTTCGAGGATG
CAAATTGCCCAAATTGGGAAAACTCGATCCACGGTCAACAAAATATGATTGATGCAAACA
ATAGAACCATTTCATTCACTTCAGCAGAGGGTAGAAAATATGAATTAAATAAACAGGTGG
CAGTACTTTTCGTCAGACCAAGAGGTTGGCATTTAAATGAAGATCATTTAGCTATTGATG
GTCTTTCAATGTCTG----------
Length of 5' end seq. 555
3' end seq. ID FC-BS12Z
3' end seq. 
>FC-BS12Z.Seq
----------TTTTTCTCCAAAATTATAAAAAAAAAAAAAAAAAAATAAATAATAAAATA
AAATTAATTAATAAATAAGAATAATCATGAGTTTCCCCAAAAATAACCAAAAAAACCTTT
GATAAAAATAAAATTATTATTAAAATATTTTATTTTTTATTTTCATCTTTTATTGCTGGA
GTATACCATGTTTCATTTTCCAAATCAGATAATCCTGGCAAACTTTTGATAAAATAAATA
TTAAAATAAAAATAAAATAAATATTCTTTGATTATTAAAAA
Length of 3' end seq. 271
Connected seq. ID FC-BS12P
Connected seq. 
>FC-BS12P.Seq
GAGAGATAAAAATGTTAAGAGGTATTGAAATTAGAGGAAAAGTTGATAAAAATGTTAAAT
CAATATTAACAGAAGAGTGTTTAACATTTTTAGGAGAATTAGAAAGAAGATTTGGAGGTA
TTAGAAAGAACTTATTACAAAAGAGATTAGATAGACAAATTGATATTAATAATGGTATTT
TACCAAGTTTGTTAAAGGATAGCGATTGTAAGAGAGCCACAGATAAGAATTGGAAATGTT
CTTCAGTACCATTAGAAATTCAAGATCGTCGTGTTGAAATTACCGGACCTACCGATAGAA
AGATGGTAATCAATGCATTGAATTCAGGTGCTAAAGTATTTATGGCAGATTTCGAGGATG
CAAATTGCCCAAATTGGGAAAACTCGATCCACGGTCAACAAAATATGATTGATGCAAACA
ATAGAACCATTTCATTCACTTCAGCAGAGGGTAGAAAATATGAATTAAATAAACAGGTGG
CAGTACTTTTCGTCAGACCAAGAGGTTGGCATTTAAATGAAGATCATTTAGCTATTGATG
GTCTTTCAATGTCTG----------TTTTTCTCCAAAATTATAAAAAAAAAAAAAAAAAA
ATAAATAATAAAATAAAATTAATTAATAAATAAGAATAATCATGAGTTTCCCCAAAAATA
ACCAAAAAAACCTTTGATAAAAATAAAATTATTATTAAAATATTTTATTTTTTATTTTCA
TCTTTTATTGCTGGAGTATACCATGTTTCATTTTCCAAATCAGATAATCCTGGCAAACTT
TTGATAAAATAAATATTAAAATAAAAATAAAATAAATATTCTTTGATTATTAAAAA
Length of connected seq. 826
Full length Seq ID -
Full length Seq. -
Length of full length seq. -