>FC-BS09 (FC-BS09Q) /CSM/FC/FC-BS/FC-BS09Q.Seq.d/
XXXXXXXXXXAAACTCTTAGAGCCAAAGTAAAGAATGAAAAAATGACAGGTCTTCAAGCT
TGGAATAGTAGTTTGGATTTAGTACTTCAATTGGCAAATGCTTACATTGAAAGAGTTTCC
ATTGAGAAATTCTTGGAAGAAGTTCAAAAATCTCCAGAAGATATTAAACCAATCTTAACT
TCACTTTGTATCCTCTATGAATTAACAAAGATTGAAAATGATCTTGGTTGGTTCCTTTCA
AATAAATACTTTGCACCAGTTAAAGGTCAAGCAATTGGTAATACAATCAATAAGGTTTGT
GGTGCATTAAAAGATCATGCAATTCCATTAGTTAAAGCATTTGATATTCCATCTCAATTT
TTAACTGCTCCAATTATTGGTGATTGGGTTTCTCATTTTTCAAATCCAAATAATTGTTAA
TTAGTAATTACTTAGGAGAGGAAAAAAAAAAAAATTTAAAACAAAACAAATTCAAATATT
GTAAAAATCTTTAAAAATTTAAATTTTTTGTTTTCCCAAATCGTCTATCATCCAAATGTA
GTAAAAAAATAAAAATTAAATTAATGACTCATCTATCTTTTTTTCTAAACAAAAATAATA
AAAAAATAATAAAAAAAATAAAAAAAGTTAATAATA

---TLRAKVKNEKMTGLQAWNSSLDLVLQLANAYIERVSIEKFLEEVQKSPEDIKPILTS
LCILYELTKIENDLGWFLSNKYFAPVKGQAIGNTINKVCGALKDHAIPLVKAFDIPSQFL
TAPIIGDWVSHFSNPNNC*lvit*erkkkki*nktnsnivkifknlnflfsqivyhpnvv
kk*kln**liylff*tkiikk**kk*kklii

Frame A:
---ns*sqske*kndrsssle**fgfstsigkclh*ksfh*eilgrsskisrry*tnlnf
tlypl*inkd*k*swlvpfk*ilcts*rssnw*ynq*glwcikrscnsis*si*ysisif
ncsnyw*lgfsffksk*llisnylgeekkknlkqnkfkycknl*kfkffvfpnrlsskcs
kkikiklmthlsfflnknnkkiikkikkvnn


Frame B:
---TLRAKVKNEKMTGLQAWNSSLDLVLQLANAYIERVSIEKFLEEVQKSPEDIKPILTS
LCILYELTKIENDLGWFLSNKYFAPVKGQAIGNTINKVCGALKDHAIPLVKAFDIPSQFL
TAPIIGDWVSHFSNPNNC*lvit*erkkkki*nktnsnivkifknlnflfsqivyhpnvv
kk*kln**liylff*tkiikk**kk*kklii


Frame C:
---llepk*rmkk*qvfklgivvwi*yfnwqmltlkefplrnswkkfknlqkilnqs*lh
fvssmn*qrlkmilvgsfqintlhqlkvkqlviqsirfvvh*kimqfh*lkhlifhlnf*
llqllvigflifqiqiivn**llrrgkkkkfktkqiqil*kslki*ifcfpkssiiqm**
knkn*indssiffskqk**knnkknkks**

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF360 (SSF360Q) /CSM/SS/SSF3-C/SSF360Q.Seq.d/                        854   0.0
FC-BS09 (FC-BS09Q) /CSM/FC/FC-BS/FC-BS09Q.Seq.d/                      854   0.0
VSB350 (VSB350Q) /CSM/VS/VSB3-C/VSB350Q.Seq.d/                        795   0.0
CHE425 (CHE425Q) /CSM/CH/CHE4-B/CHE425Q.Seq.d/                        755   0.0
VHJ446 (VHJ446Q) /CSM/VH/VHJ4-B/VHJ446Q.Seq.d/                        579   e-164
CHL275 (CHL275Q) /CSM/CH/CHL2-D/CHL275Q.Seq.d/                        547   e-155
CHM281 (CHM281Q) /CSM/CH/CHM2-D/CHM281Q.Seq.d/                        533   e-150
VHO555 (VHO555Q) /CSM/VH/VHO5-C/VHO555Q.Seq.d/                        444   e-124
CHE832 (CHE832Q) /CSM/CH/CHE8-B/CHE832Q.Seq.d/                        333   2e-90
CHM560 (CHM560Q) /CSM/CH/CHM5-C/CHM560Q.Seq.d/                        250   2e-65

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX294434|BX294434.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-236H17.    48  1.3  2
AF072735|AF072735.1 Clostridium acetobutylicum ThlR (thlR) and thiolase B (thlB) genes, complete cds; ThlC (thlC) gene, partial cds; and unknown gene.    44  2.0  1
AC105741|AC105741.2 Sus scrofa clone RP44-469N10, WORKING DRAFT SEQUENCE, 3 ordered pieces.    44  2.0  1
BX088706|BX088706.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-196C2.    44  2.0  1
AL149739|AL149739.1 Anopheles gambiae GSS SP6 end of clone 19H22 of NotreDame1 library  from strain PEST of Anopheles gambiae (African malaria mosquito).    44  2.0  1
AC144084|AC144084.1 Macaca mulatta clone CH250-272K7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  2.0  1
AP005759|AP005759.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556A05, WORKING DRAFT SEQUENCE, 1 ordered pieces.    38  2.7  3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    38  4.7  6
AL352983|AL352983.2 Human chromosome 14 DNA sequence *** IN PROGRESS *** BAC C-2216H20  of library CalTech-D from chromosome 14 of Homo sapiens (Human).    42  5.3  4
CC094774|CC094774.1 CSU-K34.112B6.SP6 CSU-K34 Aedes aegypti genomic clone CSU-K34.112B6 , DNA sequence.    38  6.4  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420293_7173(AM420293|pid:none) Saccharopolyspora erythraea NRR...    83   7e-15
CP000479_1992(CP000479|pid:none) Mycobacterium avium 104, comple...    80   4e-14
U77053_1(U77053|pid:none) Phalaenopsis cv. 'True Lady' acyl-CoA ...    76   9e-13
U66299_1(U66299|pid:none) Phalaenopsis sp. 'True Lady' acyl-CoA ...    75   1e-12
(O64894) RecName: Full=Acyl-coenzyme A oxidase, peroxisomal;    ...    74   3e-12
AL805950_2(AL805950|pid:none) Mouse DNA sequence from clone RP23...    74   3e-12
CU458896_3560(CU458896|pid:none) Mycobacterium abscessus chromos...    72   1e-11
AF202987_1(AF202987|pid:none) Petroselinum crispum acyl-CoA oxid...    69   8e-11
AP006618_2492(AP006618|pid:none) Nocardia farcinica IFM 10152 DN...    69   1e-10
(O65201) RecName: Full=Acyl-coenzyme A oxidase 2, peroxisomal;  ...    68   2e-10

 psg: 0.79  gvh: 0.49  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for FC-BS09 is cyt

>FC-BS09Z.Seq
----------AAACTCTTAGAGCCAAAGTAAAGAATGAAAAAATGACAGGTCTTCAAGCT
TGGAATAGTAGTTTGGATTTAGTACTTCAATTGGCAAATGCTTACATTGAAAGAGTTTCC
ATTGAGAAATTCTTGGAAGAAGTTCAAAAATCTCCAGAAGATATTAAACCAATCTTAACT
TCACTTTGTATCCTCTATGAATTAACAAAGATTGAAAATGATCTTGGTTGGTTCCTTTCA
AATAAATACTTTGCACCAGTTAAAGGTCAAGCAATTGGTAATACAATCAATAAGGTTTGT
GGTGCATTAAAAGATCATGCAATTCCATTAGTTAAAGCATTTGATATTCCATCTCAATTT
TTAACTGCTCCAATTATTGGTGATTGGGTTTCTCATTTTTCAAATCCAAATAATTGTTAA
TTAGTAATTACTTAGGAGAGGAAAAAAAAAAAAATTTAAAACAAAACAAATTCAAATATT
GTAAAAATCTTTAAAAATTTAAATTTTTTGTTTTCCCAAATCGTCTATCATCCAAATGTA
GTAAAAAAATAAAAATTAAATTAATGACTCATCTATCTTTTTTTCTAAACAAAAATAATA
AAAAAATAATAAAAAAAATAAAAAAAGTTAATAATA