FC-BR23
Library FC
(Link to library)
Clone ID FC-BR23
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15008-1
Original site URL
Representative seq. ID FC-BR23Z
(Link to Original site)
Representative DNA sequence
>FC-BR23 (FC-BR23Q) /CSM/FC/FC-BR/FC-BR23Q.Seq.d/
XXXXXXXXXXAAGGTGCCTCGTCATACAATCGTATCACCGTACCAGAACTCACCCAACAA
ATGTTTGATGCCAAGAATATGATGGCTGCTTCCGATCCACACAATGGTAAATACTTGACT
GCCTCTGCTCTCTTTAGAGGTAAAATCTTCACCAAGGAAGTCGATGAACAAATGCACAAC
ATTCAAACCAAAAATAGCAGTTACTTTGTCGAATGGATTCCACACAACATTAAATCCTCC
ATTTGTGATATCCCACCAAAAGGTACCCCAATGGCCGTCACCTTCATCGGTAACAACACT
GCCATCCAAGATCTCTTCAAACGTATCTCAATTCACTTCCAAGCTATGTTCCGTAGAAAG
GCTTTCCTTCATTGGTACACCCTCGAAGGTATGGAAGAATTGGAATTTACTGAAGCTGAA
TCAAACATGAACGATTTAGTTTACGAATATCAACAATATTCTAACCAAGAAACTGAAGAA
GATGGTGGTGAATATCAAGAAGAACATGAAGAACATGAAGAACAAGCTGAAAATTAAATA
AATAAAAAATAAAAAAATAAAAAATAACATATAAATTAAAATAAAAAATAAAAAAAAAAA
ATAAAAAAAATAAATAAAAAAATAATCATTATTTTATAAAATTAAATAAAT
sequence update 1998. 5.11
Translated Amino Acid sequence
---GASSYNRITVPELTQQMFDAKNMMAASDPHNGKYLTASALFRGKIFTKEVDEQMHNI
QTKNSSYFVEWIPHNIKSSICDIPPKGTPMAVTFIGNNTAIQDLFKRISIHFQAMFRRKA
FLHWYTLEGMEELEFTEAESNMNDLVYEYQQYSNQETEEDGGEYQEEHEEHEEQAEN*in
kk*knkk*hin*nkk*kkkikkinkkiiiil*n*in


Translated Amino Acid sequence (All Frames)
Frame A:
---rclviqsyhrtrthptnv*cqeydgcfrstqw*ildclcsl*r*nlhqgsr*tnaqh
snqk*qllcrmdstqh*ilhl*yptkrypngrhlhr*qhchprslqtylnslpsyvp*kg
fpslvhprrygrigiy*s*ikherfslristif*prn*rrww*isrrt*rt*rts*klnk
*kikk*kityklk*kikkknkknk*knnhyfiklnk


Frame B:
---GASSYNRITVPELTQQMFDAKNMMAASDPHNGKYLTASALFRGKIFTKEVDEQMHNI
QTKNSSYFVEWIPHNIKSSICDIPPKGTPMAVTFIGNNTAIQDLFKRISIHFQAMFRRKA
FLHWYTLEGMEELEFTEAESNMNDLVYEYQQYSNQETEEDGGEYQEEHEEHEEQAEN*in
kk*knkk*hin*nkk*kkkikkinkkiiiil*n*in


Frame C:
---vprhtivspyqnspnkclmpri*wllpihtmvnt*lpllslevkssprksmnkcttf
kpkiavtlsngfhttlnppfvishqkvpqwpspssvttlpskissnvsqftsklcsverl
sfigtpskvwknwnllklnqt*ti*ftninniltkklkkmvvnikknmknmknklkik*i
knkkiknni*ikiknkkkk*kk*ikk*slfykik*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLH391 (SLH391Q) /CSM/SL/SLH3-D/SLH391Q.Seq.d/ 1029 0.0
SLA211 (SLA211Q) /CSM/SL/SLA2-A/SLA211Q.Seq.d/ 1029 0.0
FC-BR23 (FC-BR23Q) /CSM/FC/FC-BR/FC-BR23Q.Seq.d/ 1029 0.0
SFF743 (SFF743Q) /CSM/SF/SFF7-B/SFF743Q.Seq.d/ 1017 0.0
AFM680 (AFM680Q) /CSM/AF/AFM6-D/AFM680Q.Seq.d/ 1009 0.0
FC-BQ07 (FC-BQ07Q) /CSM/FC/FC-BQ/FC-BQ07Q.Seq.d/ 1001 0.0
FC-AZ20 (FC-AZ20Q) /CSM/FC/FC-AZ/FC-AZ20Q.Seq.d/ 999 0.0
FC-AL13 (FC-AL13Q) /CSM/FC/FC-AL/FC-AL13Q.Seq.d/ 999 0.0
SFK751 (SFK751Q) /CSM/SF/SFK7-C/SFK751Q.Seq.d/ 987 0.0
VFM545 (VFM545Q) /CSM/VF/VFM5-B/VFM545Q.Seq.d/ 981 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L14000|L14000.1 Dictyostelium discoideum beta tubulin (TUBB) mRNA, complete cds. 1029 0.0 1
AF030823|AF030823.1 Dictyostelium discoideum beta tubulin gene, complete cds. 1029 0.0 1
AF276947|AF276947.1 Polysphondylium violaceum beta-tubulin gene, partial cds. 167 3e-84 3
X12768|X12768.1 Tetrahymena pyriformis beta-tubulin gene 1 (beta-TT1). 86 1e-61 6
CD431468|CD431468.1 ETH1_9_D12.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_9_D12_A002 3', mRNA sequence. 119 2e-60 5
X06653|X06653.1 Stylonychia macronuclear beta-1 tubulin gene. 78 3e-49 6
AF510208|AF510208.1 Stylonychia lemnae beta-tubulin gene, complete cds. 78 3e-49 6
AF510209|AF510209.1 Uroleptus gallina beta-tubulin gene, complete cds. 88 3e-48 6
L01415|L01415.1 Tetrahymena thermophila beta-tubulin (BTU1) gene, complete cds. 86 5e-46 5
X12769|X12769.1 Tetrahymena pyriformis beta-tubulin gene 2 (beta-TT2). 78 5e-45 6
dna update 2003. 7.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P32256) RecName: Full=Tubulin beta chain; AltName: Full=Beta-tu... 314 2e-84
L14000_1(L14000|pid:none) Dictyostelium discoideum beta tubulin ... 314 2e-84
A44848(A44848)beta 1A tubulin - slime mold (Physarum polycephalum) 250 2e-65
AF182554_1(AF182554|pid:none) Euglena gracilis beta-tubulin mRNA... 249 4e-65
JQ0120(JQ0120) tubulin beta chain - malaria parasite (Plasmodium... 249 5e-65
AY188875_1(AY188875|pid:none) Streblomastix strix clone 2 beta-t... 249 6e-65
(P12457) RecName: Full=Tubulin beta chain; AltName: Full=Beta-tu... 249 6e-65
(P34108) RecName: Full=Tubulin beta chain; AltName: Full=Beta-tu... 248 1e-64
(P14643) RecName: Full=Tubulin beta chain; AltName: Full=Beta-tu... 247 2e-64
(P11857) RecName: Full=Tubulin beta chain; AltName: Full=Beta-tu... 247 2e-64
protein update 2009. 4.14
PSORT

psg: 0.74 gvh: 0.53 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
24.0 %: cytoplasmic
20.0 %: mitochondrial
12.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for FC-BR23 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-BR23Z
3' end seq.
>FC-BR23Z.Seq
----------AAGGTGCCTCGTCATACAATCGTATCACCGTACCAGAACTCACCCAACAA
ATGTTTGATGCCAAGAATATGATGGCTGCTTCCGATCCACACAATGGTAAATACTTGACT
GCCTCTGCTCTCTTTAGAGGTAAAATCTTCACCAAGGAAGTCGATGAACAAATGCACAAC
ATTCAAACCAAAAATAGCAGTTACTTTGTCGAATGGATTCCACACAACATTAAATCCTCC
ATTTGTGATATCCCACCAAAAGGTACCCCAATGGCCGTCACCTTCATCGGTAACAACACT
GCCATCCAAGATCTCTTCAAACGTATCTCAATTCACTTCCAAGCTATGTTCCGTAGAAAG
GCTTTCCTTCATTGGTACACCCTCGAAGGTATGGAAGAATTGGAATTTACTGAAGCTGAA
TCAAACATGAACGATTTAGTTTACGAATATCAACAATATTCTAACCAAGAAACTGAAGAA
GATGGTGGTGAATATCAAGAAGAACATGAAGAACATGAAGAACAAGCTGAAAATTAAATA
AATAAAAAATAAAAAAATAAAAAATAACATATAAATTAAAATAAAAAATAAAAAAAAAAA
ATAAAAAAAATAAATAAAAAAATAATCATTATTTTATAAAATTAAATAAAT
Length of 3' end seq. 641
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -