>FC-BR03 (FC-BR03Q) /CSM/FC/FC-BR/FC-BR03Q.Seq.d/
XXXXXXXXXXTGACAAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGAC
CAGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCA
CTCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCGGTA
TTGACTCTGTCACCAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACG
ATGTTGACCCAGTTGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTCC
CATACTGTATCGTCAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCTT
CATGTGTTGCCCTCACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTTG
AATCCGCCAAACAAATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAACA
CTTTATCTGGTCCAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAA
GTTTAGCCCACTCAAAGATCTAAGCTCTTTAATAGTTTAGCGCGACTCTCACTCTTTTTT
TAAATAATCAAATAAAATAAAGGTTCTTTTAAAAAAAAAAACAAAA

---DKNTAVHLFKLLDKYRPEEASVKKARLLKIAEARAATPKGQAAPKAEKPVQHLRFGI
DSVTKLIEKKKAKLVVIAHDVDPVELVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNAS
CVALTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGNTLSGPARAILAKRQKAEAKES
LAHSKI*al**fsatltlflnnqik*rff*kkkq

Frame A:
---DKNTAVHLFKLLDKYRPEEASVKKARLLKIAEARAATPKGQAAPKAEKPVQHLRFGI
DSVTKLIEKKKAKLVVIAHDVDPVELVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNAS
CVALTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGNTLSGPARAILAKRQKAEAKES
LAHSKI*al**fsatltlflnnqik*rff*kkkq


Frame B:
---tktplsiysny*intdqkkpqsrkldy*kslkpvlplqkvkllqklknqsntyvsvl
tlspn*skrrkln*sslptmltqlnssytyqpsadvwmshtvssnlnpd*vn*ft*etlh
vlpslvstlltqtnsly*lnppnkcstitvnterpgvvtlylvqlvls*pnvkklkpkkv
*ptqrsklfnslarlslff*iik*nkgsfkkknk


Frame C:
---qkhrcpfiqiir*iqtrrslsqes*iienr*spcchskrsscsks*ktsptltfry*
lchqinrkees*isrhcprc*ps*trliltnplqtygcpilyrqi*iqir*isshekrfm
ccphwcqlc*lkrtrfis*irqtnvqq*q*tqkdlgw*hfiwssscylsqtsks*sqrkf
splkdlssliv*rdshsffk*snkikvllkkktk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BR03 (FC-BR03Q) /CSM/FC/FC-BR/FC-BR03Q.Seq.d/                     1187   0.0
FC-AK02 (FC-AK02Q) /CSM/FC/FC-AK/FC-AK02Q.Seq.d/                     1162   0.0
FC-187 (FC-187Q) /CSM/CG/CG-FC/FC-187Q.Seq.d/                        1162   0.0
FC-BL19 (FC-BL19Q) /CSM/FC/FC-BL/FC-BL19Q.Seq.d/                     1154   0.0
FC-BQ11 (FC-BQ11Q) /CSM/FC/FC-BQ/FC-BQ11Q.Seq.d/                     1148   0.0
VHC562 (VHC562Q) /CSM/VH/VHC5-C/VHC562Q.Seq.d/                       1146   0.0
VSJ540 (VSJ540Q) /CSM/VS/VSJ5-B/VSJ540Q.Seq.d/                       1124   0.0
VSF364 (VSF364Q) /CSM/VS/VSF3-C/VSF364Q.Seq.d/                       1124   0.0
FC-IC1585 (FC-IC1585Q) /CSM/FC-IC/FC-IC1585Q.Seq.d/                  1110   0.0
FC-IC1346 (FC-IC1346Q) /CSM/FC-IC/FC-IC1346Q.Seq.d/                  1102   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   644  0.0  3
BQ476680|BQ476680.1 curculio4h01.g Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 3', mRNA sequence.    54  6e-09  3
BQ476431|BQ476431.1 curculio4h01.b Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 5', mRNA sequence.    54  7e-07  2
BQ623728|BQ623728.1 USDA-FP_00819 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00819 5', mRNA sequence.    56  9e-06  2
CA755632| (Y15171) ribosomal protein L7a [Takifugu rubripes], mRNA sequence.    60  3e-05  1
CA845440|CA845440.1 hab99h11.y1 Fugu hgmpD adult gut Takifugu rubripes cDNA clone IMAGE:6356972 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  4e-04  2
CA330639|CA330639.1 hab08d06.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362938 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  6e-04  2
CA846589|CA846589.1 hab83c10.y1 Fugu hgmpC adult gill Takifugu rubripes cDNA clone IMAGE:6355194 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  6e-04  2
CA330747|CA330747.1 haa65h09.y2 Fugu hgmpF adult brain Takifugu rubripes cDNA clone 6358888 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  6e-04  2
CA330317|CA330317.1 hab04g11.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362708 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  6e-04  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a;                     355   6e-97
BC122243_1(BC122243|pid:none) Danio rerio zgc:153325, mRNA (cDNA...   180   3e-44
AY769275_1(AY769275|pid:none) Bombyx mori ribosomal protein L7A ...   179   6e-44
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso...   177   2e-43
EU934303_1(EU934303|pid:none) TSA: Anopheles darlingi AD-165 60S...   175   1e-42
EU259814_1(EU259814|pid:none) Spodoptera exigua ribosomal protei...   174   2e-42
EU124958_1(EU124958|pid:none) Arenicola marina ribosomal protein...   172   9e-42
BC076693_1(BC076693|pid:none) Xenopus tropicalis hypothetical pr...   170   3e-41
BC118908_1(BC118908|pid:none) Xenopus tropicalis hypothetical pr...   170   3e-41
(Q2TBQ5) RecName: Full=60S ribosomal protein L7a;  &BC109810_1(B...   169   5e-41

 psg: 0.40  gvh: 0.43  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for FC-BR03 is cyt

>FC-BR03Z.Seq
----------TGACAAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGAC
CAGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCA
CTCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCGGTA
TTGACTCTGTCACCAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACG
ATGTTGACCCAGTTGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTCC
CATACTGTATCGTCAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCTT
CATGTGTTGCCCTCACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTTG
AATCCGCCAAACAAATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAACA
CTTTATCTGGTCCAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAA
GTTTAGCCCACTCAAAGATCTAAGCTCTTTAATAGTTTAGCGCGACTCTCACTCTTTTTT
TAAATAATCAAATAAAATAAAGGTTCTTTTAAAAAAAAAAACAAAA