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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BQ11
Library FC
(Link to library)
Clone ID FC-BQ11
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15444-1
Original site URL
Representative seq. ID FC-BQ11Z
(Link to Original site)
Representative DNA sequence 
>FC-BQ11 (FC-BQ11Q) /CSM/FC/FC-BQ/FC-BQ11Q.Seq.d/
XXXXXXXXXXTACATCAAATTACAAGACAAAGACGTGTTTTATTAAAGAGATTAAAGGTT
CCACCAACAATCAACCAATTCACCCGTGTCTTTGACAAAAACACCGCTGTCCATTTATTC
AAATTATTAGATAAATACAGACCAGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAA
ATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAACCA
GTCCAACACTTACGTTTCGGTATTGACTCTGTCACCAAATTAATCGAAAAGAAGAAAGCT
AAATTAGTCGTCATTGCCCACGATGTTGACCCAGTTGAACTCGTCTTATACTTACCAACC
CTCTGCAGACGTATGGATGTCCCATACTGTATCGTCAAATCTAAATCCAGATTAGGTGAA
TTAGTTCACATGAGAAACGCTTCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGACTCA
AACGAACTCGCTTTATTAGTTGAATCCGCCAAACAAATGTTCAACAATAACAGTGAACAC
AGAAAGACCTGGGGTGGTAACACTTTATCCTGGTCCAGCTCGTGCTATCTTAGCCAAACG
TCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAATCAAAGATCTAAGCTCTTTAATAGTT
TAGCGAGACTCTCACTCTTTTTTTAAATAATCAAATAAAATAAAGGTTCTTTAAAAAAAA
AAAAAAAAAAAAAACAAAAAAA
sequence update 1998. 4.28
Translated Amino Acid sequence 
---HQITRQRRVLLKRLKVPPTINQFTRVFDKNTAVHLFKLLDKYRPEEASVKKARLLKI
AEARAATPKGQAAPKAEKPVQHLRFGIDSVTKLIEKKKAKLVVIAHDVDPVELVLYLPTL
CRRMDVPYCIVKSKSRLGELVHMRNASCVALTGVNSADSNELALLVESAKQMFNNNSEHR
KTWGGNTLSWSSSCYLSQTSKS*sqrkfsqikdlssliv*rdshsffk*snkikvl*kkk
kkknkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---tsnyktktcfikeikgstnnqpihpcl*qkhrcpfiqiir*iqtrrslsqes*iien
r*spcchskrsscsks*ktsptltfry*lchqinrkees*isrhcprc*ps*trliltnp
lqtygcpilyrqi*iqir*isshekrfmccphwcqlc*lkrtrfis*irqtnvqq*q*tq
kdlgw*hfilvqlvls*pnvkklkpkkv*pnqrsklfnslarlslff*iik*nkgslkkk
kkkkqk


Frame B:
---HQITRQRRVLLKRLKVPPTINQFTRVFDKNTAVHLFKLLDKYRPEEASVKKARLLKI
AEARAATPKGQAAPKAEKPVQHLRFGIDSVTKLIEKKKAKLVVIAHDVDPVELVLYLPTL
CRRMDVPYCIVKSKSRLGELVHMRNASCVALTGVNSADSNELALLVESAKQMFNNNSEHR
KTWGGNTLSWSSSCYLSQTSKS*sqrkfsqikdlssliv*rdshsffk*snkikvl*kkk
kkknkk


Frame C:
---iklqdkdvfy*rd*rfhqqstnspvsltktplsiysny*intdqkkpqsrkldy*ks
lkpvlplqkvkllqklknqsntyvsvltlspn*skrrkln*sslptmltqlnssytyqps
advwmshtvssnlnpd*vn*ft*etlhvlpslvstlltqtnsly*lnppnkcstitvnte
rpgvvtlypgparailakrqkaeakeslakski*al**fsetltlflnnqik*rffkkkk
kkktkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BQ11 (FC-BQ11Q) /CSM/FC/FC-BQ/FC-BQ11Q.Seq.d/                     1350   0.0
FC-187 (FC-187Q) /CSM/CG/CG-FC/FC-187Q.Seq.d/                        1320   0.0
FC-AK02 (FC-AK02Q) /CSM/FC/FC-AK/FC-AK02Q.Seq.d/                     1308   0.0
VHC562 (VHC562Q) /CSM/VH/VHC5-C/VHC562Q.Seq.d/                       1304   0.0
VSF364 (VSF364Q) /CSM/VS/VSF3-C/VSF364Q.Seq.d/                       1283   0.0
FC-IC1346 (FC-IC1346Q) /CSM/FC-IC/FC-IC1346Q.Seq.d/                  1283   0.0
VSJ540 (VSJ540Q) /CSM/VS/VSJ5-B/VSJ540Q.Seq.d/                       1269   0.0
FC-IC1585 (FC-IC1585Q) /CSM/FC-IC/FC-IC1585Q.Seq.d/                  1255   0.0
FC-BA22 (FC-BA22Q) /CSM/FC/FC-BA/FC-BA22Q.Seq.d/                     1249   0.0
VSG491 (VSG491Q) /CSM/VS/VSG4-D/VSG491Q.Seq.d/                       1237   0.0
own update 2003. 7.14
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   626  0.0  5
BQ476680|BQ476680.1 curculio4h01.g Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 3', mRNA sequence.    54  9e-09  3
BQ476431|BQ476431.1 curculio4h01.b Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 5', mRNA sequence.    54  1e-06  2
BQ623728|BQ623728.1 USDA-FP_00819 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00819 5', mRNA sequence.    56  1e-05  2
CA755632| (Y15171) ribosomal protein L7a [Takifugu rubripes], mRNA sequence.    60  4e-05  1
CA845440|CA845440.1 hab99h11.y1 Fugu hgmpD adult gut Takifugu rubripes cDNA clone IMAGE:6356972 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  5e-04  2
CA330639|CA330639.1 hab08d06.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362938 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  8e-04  2
CA846589|CA846589.1 hab83c10.y1 Fugu hgmpC adult gill Takifugu rubripes cDNA clone IMAGE:6355194 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  8e-04  2
CA330747|CA330747.1 haa65h09.y2 Fugu hgmpF adult brain Takifugu rubripes cDNA clone 6358888 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  8e-04  2
CA330317|CA330317.1 hab04g11.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362708 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  8e-04  2
dna update 2003. 7.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a;                     336   4e-91
AY769275_1(AY769275|pid:none) Bombyx mori ribosomal protein L7A ...   180   3e-44
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso...   177   4e-43
EU259814_1(EU259814|pid:none) Spodoptera exigua ribosomal protei...   175   1e-42
EU934303_1(EU934303|pid:none) TSA: Anopheles darlingi AD-165 60S...   175   1e-42
BC122243_1(BC122243|pid:none) Danio rerio zgc:153325, mRNA (cDNA...   174   3e-42
AY961486_1(AY961486|pid:none) Lysiphlebus testaceipes ribosomal ...   172   9e-42
BC076693_1(BC076693|pid:none) Xenopus tropicalis hypothetical pr...   171   3e-41
BC118908_1(BC118908|pid:none) Xenopus tropicalis hypothetical pr...   171   3e-41
(O57592) RecName: Full=60S ribosomal protein L7a; AltName: Full=...   171   3e-41
protein update 2009. 4.14
PSORT 

 psg: 0.59  gvh: 0.41  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.51  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: cytoplasmic
	 24.0 %: mitochondrial

>> prediction for FC-BQ11 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-BQ11Z
3' end seq. 
>FC-BQ11Z.Seq
----------TACATCAAATTACAAGACAAAGACGTGTTTTATTAAAGAGATTAAAGGTT
CCACCAACAATCAACCAATTCACCCGTGTCTTTGACAAAAACACCGCTGTCCATTTATTC
AAATTATTAGATAAATACAGACCAGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAA
ATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAACCA
GTCCAACACTTACGTTTCGGTATTGACTCTGTCACCAAATTAATCGAAAAGAAGAAAGCT
AAATTAGTCGTCATTGCCCACGATGTTGACCCAGTTGAACTCGTCTTATACTTACCAACC
CTCTGCAGACGTATGGATGTCCCATACTGTATCGTCAAATCTAAATCCAGATTAGGTGAA
TTAGTTCACATGAGAAACGCTTCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGACTCA
AACGAACTCGCTTTATTAGTTGAATCCGCCAAACAAATGTTCAACAATAACAGTGAACAC
AGAAAGACCTGGGGTGGTAACACTTTATCCTGGTCCAGCTCGTGCTATCTTAGCCAAACG
TCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAATCAAAGATCTAAGCTCTTTAATAGTT
TAGCGAGACTCTCACTCTTTTTTTAAATAATCAAATAAAATAAAGGTTCTTTAAAAAAAA
AAAAAAAAAAAAAACAAAAAAA
Length of 3' end seq. 732
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -