FC-BP17
Library FC
(Link to library)
Clone ID FC-BP17
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID FC-BP17E
(Link to Original site)
Representative DNA sequence
>FC-BP17 (FC-BP17Q) /CSM/FC/FC-BP/FC-BP17Q.Seq.d/
GAACTTTCCTTGCTGTTAAACCAGACGGTGTTGCTCGTGGTTTAGTTGGTGAAATCATCG
CCAGATACGAAAAGAAAGGTTTCGTTTTAGTTGGTTTAAAACAATTAGTTCCAACCAAAG
ACTTAGCTGAATCTCACTATGCTGAACACAAAGAAAGACCATTCTTCGGTGGTTTAGTCT
CATTCATTACCTCTGGTCCAGTCGTTGCTATGGTCTTCGAAGGTAAAGGTGTTGTTGCCT
CTGCCCGTTTAATGATCGGTGTTACCAACCCATTAGCCTCAGCCCCAGGTTCAATTCGTG
GTGATTTCGGTGTTGATGTTGGTAGAAACATCATCCACGGTTCTGATTCAGTTGAATCTG
CCAACAGAGAAATTGCTTTATGGTTCAAACCAGAAGAATTATTAACTGAAGTTAAACCAA
ACCCAAATTAATACGAATAAATAATTTAGCTAAATTCTAAATCATTTAATGTAAAAAAAA
AAACAAAAAAAAA
sequence update 1998. 4.23
Translated Amino Acid sequence
TFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVS
FITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESA
NREIALWFKPEELLTEVKPNPN*ye*ii*lnsksfnvkkktkk


Translated Amino Acid sequence (All Frames)
Frame A:
elslllnqtvllvv*lvksspdtkrkvsf*lv*nn*fqpkt*lnltmlntkkdhssvv*s
hslplvqsllwsskvkvllplpv**svlpth*pqpqvqfvvisvlmlvetsstvliqlnl
ptekllygsnqkny*lklnqtqintnk*fs*ilnhlm*kkkqkk


Frame B:
nfpcc*trrccswfsw*nhrqirkerfrfswfktissnqrls*islc*tqrktilrwfsl
ihylwssrcyglrr*rccclcpfndrcyqpislsprfnsw*frc*cw*khhprf*fs*ic
qqrncfmvqtrriin*s*tkpklirinnlakf*ii*ckkknkkk


Frame C:
TFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVS
FITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESA
NREIALWFKPEELLTEVKPNPN*ye*ii*lnsksfnvkkktkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-BP17 (FC-BP17Q) /CSM/FC/FC-BP/FC-BP17Q.Seq.d/ 936 0.0
VSJ480 (VSJ480Q) /CSM/VS/VSJ4-D/VSJ480Q.Seq.d/ 928 0.0
VHN707 (VHN707Q) /CSM/VH/VHN7-A/VHN707Q.Seq.d/ 928 0.0
VHK695 (VHK695Q) /CSM/VH/VHK6-D/VHK695Q.Seq.d/ 928 0.0
SLE365 (SLE365Q) /CSM/SL/SLE3-C/SLE365Q.Seq.d/ 928 0.0
SLD152 (SLD152Q) /CSM/SL/SLD1-C/SLD152Q.Seq.d/ 928 0.0
VHB850 (VHB850Q) /CSM/VH/VHB8-C/VHB850Q.Seq.d/ 922 0.0
SLG669 (SLG669Q) /CSM/SL/SLG6-C/SLG669Q.Seq.d/ 916 0.0
AFN515 (AFN515Q) /CSM/AF/AFN5-A/AFN515Q.Seq.d/ 914 0.0
VHC612 (VHC612Q) /CSM/VH/VHC6-A/VHC612Q.Seq.d/ 912 0.0

own update 2002.11.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

A32505|A32505.1 D.discoideum NDP kinase gene. 928 0.0 1
J05457|J05457.1 D.discoideum nucleoside diphosphate kinase Gip17 mRNA, complete cds. 928 0.0 1
L23067|L23067.1 Dictyostelium discoideum nucleoside diphosphate kinase (ndkC) gene, complete cds. 551 0.0 3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 551 0.0 7
L23068|L23068.1 Dictyostelium discoideum nucleoside diphosphate kinase (ndkM) gene, complete cds. 50 2e-11 4
AV877037|AV877037.1 Ciona intestinalis cDNA, clone:rcitb31g21, 3' end, single read. 42 9e-06 2
AX300907|AX300907.1 Sequence 13 from Patent WO0185989. 52 1e-05 2
AV869488|AV869488.1 Ciona intestinalis cDNA, clone:rcieg49g01, 3' end, single read. 42 1e-05 2
AV873793|AV873793.1 Ciona intestinalis cDNA, clone:rcieg29n08, 3' end, single read. 42 1e-05 2
AV982919|AV982919.1 Ciona intestinalis cDNA, clone:cieg25f20, 5' end, single read. 42 1e-05 2
dna update 2003.12.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

NRL(1NDC) Nucleoside diphosphate kinase (EC 2.7.4.6) complexed W... 286 2e-76
(P22887) RecName: Full=Nucleoside diphosphate kinase, cytosolic;... 286 2e-76
NRL(1NDK) Nucleoside diphosphate kinase (EC 2.7.4.6) mutant with... 281 4e-75
(B0C4I0) RecName: Full=Nucleoside diphosphate kinase; S... 215 5e-55
(P50590) RecName: Full=Nucleoside diphosphate kinase; S... 205 5e-52
(Q7NMQ5) RecName: Full=Nucleoside diphosphate kinase; S... 204 7e-52
CP001037_5754(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 200 1e-50
CT978603_2377(CT978603|pid:none) Synechococcus sp. RCC307 genomi... 198 5e-50
(Q0I6J3) RecName: Full=Nucleoside diphosphate kinase; S... 197 1e-49
(Q3AVV5) RecName: Full=Nucleoside diphosphate kinase; S... 196 2e-49
protein update 2009. 7. 3
PSORT

psg: 0.76 gvh: 0.48 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.13 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: peroxisomal
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for FC-BP17 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-BP17E
Full length Seq.
>FC-BP17E.Seq
GAACTTTCCTTGCTGTTAAACCAGACGGTGTTGCTCGTGGTTTAGTTGGTGAAATCATCG
CCAGATACGAAAAGAAAGGTTTCGTTTTAGTTGGTTTAAAACAATTAGTTCCAACCAAAG
ACTTAGCTGAATCTCACTATGCTGAACACAAAGAAAGACCATTCTTCGGTGGTTTAGTCT
CATTCATTACCTCTGGTCCAGTCGTTGCTATGGTCTTCGAAGGTAAAGGTGTTGTTGCCT
CTGCCCGTTTAATGATCGGTGTTACCAACCCATTAGCCTCAGCCCCAGGTTCAATTCGTG
GTGATTTCGGTGTTGATGTTGGTAGAAACATCATCCACGGTTCTGATTCAGTTGAATCTG
CCAACAGAGAAATTGCTTTATGGTTCAAACCAGAAGAATTATTAACTGAAGTTAAACCAA
ACCCAAATTAATACGAATAAATAATTTAGCTAAATTCTAAATCATTTAATGTAAAAAAAA
AAACAAAAAAAAA
Length of full length seq. 493