FC-BP14
Library FC
(Link to library)
Clone ID FC-BP14
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15220-1
Original site URL
Representative seq. ID FC-BP14P
(Link to Original site)
Representative DNA sequence
>FC-BP14 (FC-BP14Q) /CSM/FC/FC-BP/FC-BP14Q.Seq.d/
GTTACTCCGATGGTGCAATAGCAAGTGGTTTCACTCAATTAGGTAAAACCATTGAACGTG
GTGTTGTCATTAGTAGTTTTCCAGGTGGCCCAACCGAAAATATTGAATATTTATTAAGAA
ATGAATTATTAGGTGGTTTCTCTGACTATTTAATTAGAATCGATAGATTGGATGTTTTAT
CAAAAATTAAAGAAATCATTTCCAATCAAGAAGAGGAAGATACTACTAGATCTTCAAAAG
GATTACAATGCTCACATTTCTCAACTTGGGGTGATAAAACTTTTAATGGTGATATGTTTA
ATGGTAGAAATTTAGATTGGTTAAATGGATCAGGTATTAGTAATAATAAATTGATTACAT
TCTATAATCCAGTTGGTCAATATTCACATGCCGCTATTGGATTTGCAGGTTTAATTGGTG
CAATCGTTGGTATTAGTTCCAAGGGTATTTTCGTAGCTGAATCTGATAATGACTCTGTAA
AGGTTACTTTTGATGGTTTTGCATGGGXXXXXXXXXXCAGTATCCACTATGGGAGTCCAC
TAACAATACAATGGGCATGTGCCACAGTCTTGCAAGTGCAACTGAGGCATCAACCGCTGA
GCATCCAGCATTCGCTTTGGAAACTATGAAGGGATACACCGCATTCTTCTCTGACAACGA
TCCAAACGAACATTACATTTACACTGATCCAAAGACCGGTGAACAAACTCAAATGGGTTA
CCCATTAGACAACGCAGTCTATCGTACAAATCATGGTTATGATGAAACTATTCGTCAAAA
TGAATGGGAGCCAGCCATCCCAAATGGCGATTCATGGACTCGTTACATGCTCTTCTATAA
CACCTTTTCTTATTACACCGCATCCAACACCACAATCTCTGAACTCCAAGCCATCAACAT
CACCTCTATCCTTGGTAACAAACATAGCATCCAAGATATCTACTCTTCACCAGCTCCATT
CTACGATTGTACTAACGCTTGGATGGGTTACAACATCATCTCTTCAACTTTCCATTTTAA
ATCAAATAAAATGTTTGTAGCTTTTGAAGAAGGTTTTGGTCAACAAAGAATTTGTGCTGC
TTGTGGTACTTATGTTGAAGTTGATTTAACACCATTTTTTGGTCCATTTTAAAAAATAGA
AAAAAAATAAAAAATAAAAAAATTAAAAAATAAACACATATAAAAAAAAAAA
sequence update 1998. 5.13
Translated Amino Acid sequence
YSDGAIASGFTQLGKTIERGVVISSFPGGPTENIEYLLRNELLGGFSDYLIRIDRLDVLS
KIKEIISNQEEEDTTRSSKGLQCSHFSTWGDKTFNGDMFNGRNLDWLNGSGISNNKLITF
YNPVGQYSHAAIGFAGLIGAIVGISSKGIFVAESDNDSVKVTFDGFAW---

---QYPLWESTNNTMGMCHSLASATEASTAEHPAFALETMKGYTAFFSDNDPNEHYIYTD
PKTGEQTQMGYPLDNAVYRTNHGYDETIRQNEWEPAIPNGDSWTRYMLFYNTFSYYTASN
TTISELQAINITSILGNKHSIQDIYSSPAPFYDCTNAWMGYNIISSTFHFKSNKMFVAFE
EGFGQQRICAACGTYVEVDLTPFFGPF*kiekk*kikklknkhi*kkk


Translated Amino Acid sequence (All Frames)
Frame A:
vtpmvq*qvvsln*vkplnvvlslvvfqvaqpkilniy*emny*vvslti*lesidwmfy
qklkksfpikkrkilldlqkdynahisqlgvikllmviclmvei*ig*mdqvlviin*lh
siiqlvnihmplldlqv*lvqslvlvprvfs*lnlimtl*rlllmvlhg---

---QYPLWESTNNTMGMCHSLASATEASTAEHPAFALETMKGYTAFFSDNDPNEHYIYTD
PKTGEQTQMGYPLDNAVYRTNHGYDETIRQNEWEPAIPNGDSWTRYMLFYNTFSYYTASN
TTISELQAINITSILGNKHSIQDIYSSPAPFYDCTNAWMGYNIISSTFHFKSNKMFVAFE
EGFGQQRICAACGTYVEVDLTPFFGPF*kiekk*kikklknkhi*kkk

Frame B:
llrwcnskwfhsir*nh*twcch**fsrwpnrky*ifikk*iirwfl*lfn*nr*igcfi
kn*rnhfqsrrgryy*ifkritmltflnlg**nf*w*yv*w*kfrlvkwiry****idyi
l*sswsiftcrywicrfnwcnrwy*fqgyfrs*i***lckgyf*wfcm---

---sihygspltiqwacatvlqvqlrhqplsiqhslwkl*rdtphsslttiqtnitftli
qrpvnklkwvth*ttqsivqimvmmklfvkmngsqpsqmaihglvtcssitpflitphpt
pqslnskpstsplslvtniaskistlhqlhstivltlgwvttsslqlsilnqikcl*llk
kvlvnkefvllvvlmlkli*hhflvhfkk*kknkk*kn*kintykkk

Frame C:
YSDGAIASGFTQLGKTIERGVVISSFPGGPTENIEYLLRNELLGGFSDYLIRIDRLDVLS
KIKEIISNQEEEDTTRSSKGLQCSHFSTWGDKTFNGDMFNGRNLDWLNGSGISNNKLITF
YNPVGQYSHAAIGFAGLIGAIVGISSKGIFVAESDNDSVKVTFDGFAW---

---vstmgvh*qynghvpqsckcn*ginr*assirfgnyegihrill*qrskrtlhlh*s
kdr*tnsnglpirqrslsykswl**nyssk*mgashpkwrfmdslhall*hlfllhriqh
hnl*tpshqhhlypw*qt*hpryllftssilrly*rldglqhhlfnfpf*ik*nvcsf*r
rfwstknlcclwylc*s*fntifwsilknrkkiknkkikk*thikkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-BP14 (FC-BP14Q) /CSM/FC/FC-BP/FC-BP14Q.Seq.d/ 2181 0.0
VFL812 (VFL812Q) /CSM/VF/VFL8-A/VFL812Q.Seq.d/ 1164 0.0
FC-BQ01 (FC-BQ01Q) /CSM/FC/FC-BQ/FC-BQ01Q.Seq.d/ 1164 0.0
FC-558 (FC-558Q) /CSM/CG/CG-FC/FC-558Q.Seq.d/ 1164 0.0
VFA748 (VFA748Q) /CSM/VF/VFA7-B/VFA748Q.Seq.d/ 1047 0.0
VFJ230 (VFJ230Q) /CSM/VF/VFJ2-B/VFJ230Q.Seq.d/ 367 e-100
VHK583 (VHK583Q) /CSM/VH/VHK5-D/VHK583Q.Seq.d/ 38 0.30
VHK272 (VHK272Q) /CSM/VH/VHK2-C/VHK272Q.Seq.d/ 38 0.30
VHH393 (VHH393Q) /CSM/VH/VHH3-D/VHH393Q.Seq.d/ 38 0.30
VHG857 (VHG857Q) /CSM/VH/VHG8-C/VHG857Q.Seq.d/ 38 0.30

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL845474|AL845474.6 Mouse DNA sequence from clone RP23-380N15 on chromosome 2. 42 0.095 4
AL596169|AL596169.1 Listeria innocua Clip11262 complete genome, segment 7/12. 48 0.20 4
AF102167|AF102167.1 Listeria monocytogenes isolate A8T1 stress protein-like protein gene, complete cds. 48 0.25 1
AX413398|AX413398.1 Sequence 389 from Patent WO0228891. 48 0.25 1
AX417045|AX417045.1 Sequence 4036 from Patent WO0228891. 48 0.51 4
AX413017|AX413017.1 Sequence 8 from Patent WO0228891. 48 0.51 4
AL591979|AL591979.1 Listeria monocytogenes strain EGD, complete genome, segment 7/12. 48 0.66 4
AE010647|AE010647.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 189 of 197 of the complete genome. 36 0.69 3
AL136300|AL136300.22 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP11-10G5. 46 0.98 1
AC092601|AC092601.3 Homo sapiens chromosome 2 clone RP11-125M15, complete sequence. 44 3.9 1
dna update 2003. 7.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000139_995(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ... 45 0.004
CU207366_1635(CU207366|pid:none) Gramella forsetii KT0803 comple... 40 0.20
CP000444_309(CP000444|pid:none) Shewanella sp. MR-7, complete ge... 37 1.0
CP000612_2994(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 37 1.3
AF310896_4(AF310896|pid:none) Dictyostelium discoideum RacJ (rac... 36 2.9
AE001437_2992(AE001437|pid:none) Clostridium acetobutylicum ATCC... 36 2.9
CP000758_910(CP000758|pid:none) Ochrobactrum anthropi ATCC 49188... 35 3.8
CP001146_607(CP001146|pid:none) Dictyoglomus thermophilum H-6-12... 34 8.5
CP001251_718(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ... 34 8.5

protein update 2009. 4.14
PSORT

psg: 0.75 gvh: 0.40 alm: 0.30 top: 0.37 tms: 0.07 mit: 0.17 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.08 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: mitochondrial
20.0 %: nuclear
20.0 %: cytoplasmic
8.0 %: plasma membrane
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for FC-BP14 is end

5' end seq. ID FC-BP14F
5' end seq.
>FC-BP14F.Seq
GTTACTCCGATGGTGCAATAGCAAGTGGTTTCACTCAATTAGGTAAAACCATTGAACGTG
GTGTTGTCATTAGTAGTTTTCCAGGTGGCCCAACCGAAAATATTGAATATTTATTAAGAA
ATGAATTATTAGGTGGTTTCTCTGACTATTTAATTAGAATCGATAGATTGGATGTTTTAT
CAAAAATTAAAGAAATCATTTCCAATCAAGAAGAGGAAGATACTACTAGATCTTCAAAAG
GATTACAATGCTCACATTTCTCAACTTGGGGTGATAAAACTTTTAATGGTGATATGTTTA
ATGGTAGAAATTTAGATTGGTTAAATGGATCAGGTATTAGTAATAATAAATTGATTACAT
TCTATAATCCAGTTGGTCAATATTCACATGCCGCTATTGGATTTGCAGGTTTAATTGGTG
CAATCGTTGGTATTAGTTCCAAGGGTATTTTCGTAGCTGAATCTGATAATGACTCTGTAA
AGGTTACTTTTGATGGTTTTGCATGGG----------
Length of 5' end seq. 507
3' end seq. ID FC-BP14Z
3' end seq.
>FC-BP14Z.Seq
----------CAGTATCCACTATGGGAGTCCACTAACAATACAATGGGCATGTGCCACAG
TCTTGCAAGTGCAACTGAGGCATCAACCGCTGAGCATCCAGCATTCGCTTTGGAAACTAT
GAAGGGATACACCGCATTCTTCTCTGACAACGATCCAAACGAACATTACATTTACACTGA
TCCAAAGACCGGTGAACAAACTCAAATGGGTTACCCATTAGACAACGCAGTCTATCGTAC
AAATCATGGTTATGATGAAACTATTCGTCAAAATGAATGGGAGCCAGCCATCCCAAATGG
CGATTCATGGACTCGTTACATGCTCTTCTATAACACCTTTTCTTATTACACCGCATCCAA
CACCACAATCTCTGAACTCCAAGCCATCAACATCACCTCTATCCTTGGTAACAAACATAG
CATCCAAGATATCTACTCTTCACCAGCTCCATTCTACGATTGTACTAACGCTTGGATGGG
TTACAACATCATCTCTTCAACTTTCCATTTTAAATCAAATAAAATGTTTGTAGCTTTTGA
AGAAGGTTTTGGTCAACAAAGAATTTGTGCTGCTTGTGGTACTTATGTTGAAGTTGATTT
AACACCATTTTTTGGTCCATTTTAAAAAATAGAAAAAAAATAAAAAATAAAAAAATTAAA
AAATAAACACATATAAAAAAAAAAA
Length of 3' end seq. 675
Connected seq. ID FC-BP14P
Connected seq.
>FC-BP14P.Seq
GTTACTCCGATGGTGCAATAGCAAGTGGTTTCACTCAATTAGGTAAAACCATTGAACGTG
GTGTTGTCATTAGTAGTTTTCCAGGTGGCCCAACCGAAAATATTGAATATTTATTAAGAA
ATGAATTATTAGGTGGTTTCTCTGACTATTTAATTAGAATCGATAGATTGGATGTTTTAT
CAAAAATTAAAGAAATCATTTCCAATCAAGAAGAGGAAGATACTACTAGATCTTCAAAAG
GATTACAATGCTCACATTTCTCAACTTGGGGTGATAAAACTTTTAATGGTGATATGTTTA
ATGGTAGAAATTTAGATTGGTTAAATGGATCAGGTATTAGTAATAATAAATTGATTACAT
TCTATAATCCAGTTGGTCAATATTCACATGCCGCTATTGGATTTGCAGGTTTAATTGGTG
CAATCGTTGGTATTAGTTCCAAGGGTATTTTCGTAGCTGAATCTGATAATGACTCTGTAA
AGGTTACTTTTGATGGTTTTGCATGGG----------CAGTATCCACTATGGGAGTCCAC
TAACAATACAATGGGCATGTGCCACAGTCTTGCAAGTGCAACTGAGGCATCAACCGCTGA
GCATCCAGCATTCGCTTTGGAAACTATGAAGGGATACACCGCATTCTTCTCTGACAACGA
TCCAAACGAACATTACATTTACACTGATCCAAAGACCGGTGAACAAACTCAAATGGGTTA
CCCATTAGACAACGCAGTCTATCGTACAAATCATGGTTATGATGAAACTATTCGTCAAAA
TGAATGGGAGCCAGCCATCCCAAATGGCGATTCATGGACTCGTTACATGCTCTTCTATAA
CACCTTTTCTTATTACACCGCATCCAACACCACAATCTCTGAACTCCAAGCCATCAACAT
CACCTCTATCCTTGGTAACAAACATAGCATCCAAGATATCTACTCTTCACCAGCTCCATT
CTACGATTGTACTAACGCTTGGATGGGTTACAACATCATCTCTTCAACTTTCCATTTTAA
ATCAAATAAAATGTTTGTAGCTTTTGAAGAAGGTTTTGGTCAACAAAGAATTTGTGCTGC
TTGTGGTACTTATGTTGAAGTTGATTTAACACCATTTTTTGGTCCATTTTAAAAAATAGA
AAAAAAATAAAAAATAAAAAAATTAAAAAATAAACACATATAAAAAAAAAAA
Length of connected seq. 1182
Full length Seq ID -
Full length Seq. -
Length of full length seq. -