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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BO11
Library FC
(Link to library)
Clone ID FC-BO11
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16090-1
Original site URL
Representative seq. ID FC-BO11E
(Link to Original site)
Representative DNA sequence 
>FC-BO11 (FC-BO11Q) /CSM/FC/FC-BO/FC-BO11Q.Seq.d/
AAGACCTCTCACACTCCACGTCGTCCATTCGAAAAGGAAAGAATCGACGCTGAATTAAAA
GTTGTCGGTGAATTTGGTTTAAAGAACAAAAACGAAGTATGGAGAGTCCAATACGCTTTA
GCCAAAATCAGAAAGGCTGCTAGAGAACTCCTCGTTCTTGATGAAAAAGACCCAAAACGT
ATCTTTGAAGGTTCAGCTCTCCTCCGTAGACTCCACAAATTAGGTGTCATGGAAGAATCA
AAGAACAAACTCGATTATATTCTTAATCTTAAAGTTCAAGATTTCATGGAAAGACGTCTC
CAAACTTTAGTCTTCAAAAATGGTCTTGCCAAATCAATCCATCACGCTCGTGTTTTAATC
AAAGGTAGACACATCCGTGTTGGTAAACAATTAGTCAACGTTCCATCTTTCCTCGTCCGT
GTTGAATCCCAAAAGCACTTAGGTTTAGCTTCAACCTCCCCATTAGCTGGTGGTCGTCCA
GGTCGTCGTGCCCGTAAAATGGCCAAGAACAACTCATCAAAAGGTGAAGAAGAAAACTAA
ATTAATAAAAATAACCATTATATTAGAGAGTAGTATATTGTAGTAAAAAAAAAAAAAAAA
AAAAA
sequence update 1998. 4.20
Translated Amino Acid sequence 
KTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKR
IFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLI
KGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARKMAKNNSSKGEEEN*
inknnhyire*yivvkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
KTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKR
IFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLI
KGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARKMAKNNSSKGEEEN*
inknnhyire*yivvkkkkkk


Frame B:
rpltlhvvhskrkestln*klsvnlv*rtktkygesntl*pkserllenssflmkktqnv
slkvqlssvdstn*vswknqrtnsiiflilkfkiswkdvskl*sskmvlpnqsitlvf*s
kvdtsvlvnn*stfhlsssvlnpkst*v*lqpph*lvvvqvvvpvkwprtthqkvkkktk
likitiilessil**kkkkkk


Frame C:
dlshstssirkgknrr*ikscr*iwfkeqkrsmespirfsqnqkgc*rtprs**krpkty
l*rfsspp*tpqirchgrikeqtrlys*s*ssrfhgktspnfslqkwscqinpsrscfnq
r*thpcw*tisqrsifprpc*ipkalrfsfnlpiswwssrsscp*ngqeqlikr*rrkln
**k*ply*rvvycskkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BO11 (FC-BO11Q) /CSM/FC/FC-BO/FC-BO11Q.Seq.d/                     1158   0.0
FC-AS15 (FC-AS15Q) /CSM/FC/FC-AS/FC-AS15Q.Seq.d/                     1154   0.0
VHO354 (VHO354Q) /CSM/VH/VHO3-C/VHO354Q.Seq.d/                       1140   0.0
VSH713 (VSH713Q) /CSM/VS/VSH7-A/VSH713Q.Seq.d/                       1128   0.0
VHJ170 (VHJ170Q) /CSM/VH/VHJ1-C/VHJ170Q.Seq.d/                       1122   0.0
VSD109 (VSD109Q) /CSM/VS/VSD1-A/VSD109Q.Seq.d/                       1108   0.0
VSF164 (VSF164Q) /CSM/VS/VSF1-C/VSF164Q.Seq.d/                       1102   0.0
VSD823 (VSD823Q) /CSM/VS/VSD8-A/VSD823Q.Seq.d/                       1094   0.0
VFA445 (VFA445Q) /CSM/VF/VFA4-B/VFA445Q.Seq.d/                       1080   0.0
VSH205 (VSH205Q) /CSM/VS/VSH2-A/VSH205Q.Seq.d/                       1078   0.0
own update 2002.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X06636|X06636.1 Dictyostelium rp1024 gene for ribosomal protein 1024.  1158   0.0    1
X15384|X15384.1 Dictyostelium discoideum mRNA for V12 gene.       779   0.0    1
AL114484|AL114484.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   4e-15  2
AL113432|AL113432.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   4e-15  2
AL112836|AL112836.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   4e-15  2
AL115396|AL115396.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   4e-15  2
AL115391|AL115391.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   4e-15  2
AL116832|AL116832.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   4e-15  2
AL116249|AL116249.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   4e-15  2
AL116178|AL116178.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   4e-15  2
dna update 2003.12.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P14132) RecName: Full=40S ribosomal protein S9; AltName: Full=4...   305   5e-82
AY857466_1(AY857466|pid:none) Suberites domuncula S9 mRNA, compl...   238   1e-61
AY961563_1(AY961563|pid:none) Lysiphlebus testaceipes ribosomal ...   232   7e-60
AP007167_255(AP007167|pid:none) Aspergillus oryzae RIB40 genomic...   232   7e-60
AM270039_25(AM270039|pid:none) Aspergillus niger contig An02c045...   231   2e-59
BT043959_1(BT043959|pid:none) Salmo salar clone HM5_0638 ribosom...   230   2e-59
BT047496_1(BT047496|pid:none) Salmo salar clone ssal-rgb-509-120...   230   2e-59
BC073375_1(BC073375|pid:none) Xenopus laevis MGC80804 protein, m...   230   2e-59
(Q9LXG1) RecName: Full=40S ribosomal protein S9-1;  &AK228437_1(...   229   3e-59
AM920435_274(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   229   5e-59
protein update 2009. 7. 3
PSORT 

 psg: 0.35  gvh: 0.20  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.03
 nuc: 0.23  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for FC-BO11 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-BO11E
Full length Seq. 
>FC-BO11E.Seq
AAGACCTCTCACACTCCACGTCGTCCATTCGAAAAGGAAAGAATCGACGCTGAATTAAAA
GTTGTCGGTGAATTTGGTTTAAAGAACAAAAACGAAGTATGGAGAGTCCAATACGCTTTA
GCCAAAATCAGAAAGGCTGCTAGAGAACTCCTCGTTCTTGATGAAAAAGACCCAAAACGT
ATCTTTGAAGGTTCAGCTCTCCTCCGTAGACTCCACAAATTAGGTGTCATGGAAGAATCA
AAGAACAAACTCGATTATATTCTTAATCTTAAAGTTCAAGATTTCATGGAAAGACGTCTC
CAAACTTTAGTCTTCAAAAATGGTCTTGCCAAATCAATCCATCACGCTCGTGTTTTAATC
AAAGGTAGACACATCCGTGTTGGTAAACAATTAGTCAACGTTCCATCTTTCCTCGTCCGT
GTTGAATCCCAAAAGCACTTAGGTTTAGCTTCAACCTCCCCATTAGCTGGTGGTCGTCCA
GGTCGTCGTGCCCGTAAAATGGCCAAGAACAACTCATCAAAAGGTGAAGAAGAAAACTAA
ATTAATAAAAATAACCATTATATTAGAGAGTAGTATATTGTAGTAAAAAAAAAAAAAAAA
AAAAA
Length of full length seq. 605