>FC-BN21 (FC-BN21Q) /CSM/FC/FC-BN/FC-BN21Q.Seq.d/
AAAATGACAAAACCAGTTTATTCAAAGACCCCATCCAACCCAGAAAAATCCTGCAAATCT
CGTGGTTCTAACTTAAGAATTCACTTCAAGAACACCAGAGAATCAGCTATGGCCATCAAA
GGTATGCTCTTAACCAGAGCTAAAGCTTACTTAAACAACGTTTTAGCCCATAGAGAATGT
ATCCCATTCAGAAGATTCAAAGGTGGTGTAGGTCGTACTGGTCAAGCCAAAATTTTCGGT
ACCAGTCAAGGTAGATGGCCAAAGAAATCTGTTGAACACATTTTATCACTCCTCCAAAAT
GCTGAAGCCAACGCTGAAGCTAAGGGTTTAAATGTTGAAAAACTCAAGATCGCTCACGTT
CAAGTTCAACGTGCTCAACAACAACGTAGAAGAACCTACAGAGCACATGGTCGTATCAAT
CCATACATGTGTTCACCATCAACTGTTGAATTCATCCTCACTGAAGTTGAAAAAGCTGTC
CCAAAACCAGCTGAAGAATCCGCCCAAAAGAAGAAATCTGTCGCCACCCAAGAAATCTCT
GCTTAAATAAAAAAATATAATTATTAAAAAAAAAAAAAAAAAAAAAAA

KMTKPVYSKTPSNPEKSCKSRGSNLRIHFKNTRESAMAIKGMLLTRAKAYLNNVLAHREC
IPFRRFKGGVGRTGQAKIFGTSQGRWPKKSVEHILSLLQNAEANAEAKGLNVEKLKIAHV
QVQRAQQQRRRTYRAHGRINPYMCSPSTVEFILTEVEKAVPKPAEESAQKKKSVATQEIS
A*ikkyny*kkkkkkk

Frame A:
KMTKPVYSKTPSNPEKSCKSRGSNLRIHFKNTRESAMAIKGMLLTRAKAYLNNVLAHREC
IPFRRFKGGVGRTGQAKIFGTSQGRWPKKSVEHILSLLQNAEANAEAKGLNVEKLKIAHV
QVQRAQQQRRRTYRAHGRINPYMCSPSTVEFILTEVEKAVPKPAEESAQKKKSVATQEIS
A*ikkyny*kkkkkkk


Frame B:
k*qnqfiqrphptqknpanlvvlt*eftsrtpenqlwpskvcs*pelklt*ttf*pienv
shsedskvv*vvlvkpkfsvpvkvdgqrnllntfyhsskmlkptlklrv*mlknsrsltf
kfnvlnnnveeptehmvvsihtcvhhqllnssslklkklsqnqlknppkrrnlsppkksl
lk*kniiikkkkkkk


Frame C:
ndktslfkdpiqprkilqiswf*lknslqehqrisyghqryalnqs*sllkqrfsp*rmy
piqkiqrwcrsywssqnfryqsr*makeic*thfitppkc*sqr*s*gfkc*ktqdrsrs
sstcsttt*knlqstwsyqsihvftinc*ihph*s*kscpkts*rirpkeeicrhprnlc
lnkki*llkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG433 (VSG433Q) /CSM/VS/VSG4-B/VSG433Q.Seq.d/                       1120   0.0
VSF481 (VSF481Q) /CSM/VS/VSF4-D/VSF481Q.Seq.d/                       1120   0.0
VSE411 (VSE411Q) /CSM/VS/VSE4-A/VSE411Q.Seq.d/                       1120   0.0
VSB717 (VSB717Q) /CSM/VS/VSB7-A/VSB717Q.Seq.d/                       1120   0.0
FC-BN21 (FC-BN21Q) /CSM/FC/FC-BN/FC-BN21Q.Seq.d/                     1120   0.0
VSF310 (VSF310Q) /CSM/VS/VSF3-A/VSF310Q.Seq.d/                       1116   0.0
VSJ734 (VSJ734Q) /CSM/VS/VSJ7-B/VSJ734Q.Seq.d/                       1106   0.0
FC-538 (FC-538Q) /CSM/CG/CG-FC/FC-538Q.Seq.d/                        1104   0.0
VSH352 (VSH352Q) /CSM/VS/VSH3-C/VSH352Q.Seq.d/                       1090   0.0
FC-BN14 (FC-BN14Q) /CSM/FC/FC-BN/FC-BN14Q.Seq.d/                     1084   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CA755192|0    46   6e-06  3
AL395406|AL395406.1 T3 end of clone AR0AA023E08 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    38   5e-04  3
BP188408|BP188408.1 Dugesia japonica cDNA, clone: 02829_HH, expressed in the head.    56   6e-04  1
BP186921|BP186921.1 Dugesia japonica cDNA, clone: 00867_HH, expressed in the head.    56   6e-04  1
BP186264|BP186264.1 Dugesia japonica cDNA, clone: 01881_HH, expressed in the head.    56   6e-04  1
AL384688|AL384688.1 Medicago truncatula EST MtBC23G08F1 : T3 end of clone MtBC23G08 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    50   8e-04  2
AL385159|AL385159.1 Medicago truncatula EST MtBC26G02F1 : T3 end of clone MtBC26G02 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    50   8e-04  2
BQ474545|BQ474545.1 biphyllus2a08.g Biphyllus lunatus cDNA Biphyllus lunatus cDNA clone biphyllus2a08 3', mRNA sequence.    36   0.001  3
AU274237|AU274237.1 Hemicentrotus pulcherrimus mRNA, clone:003a01r_G11, 5' end, single read.    44   0.001  2
BQ474204|BQ474204.1 biphyllus2a08.b Biphyllus lunatus cDNA Biphyllus lunatus cDNA clone biphyllus2a08 5', mRNA sequence.    36   0.001  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB173559_1(AB173559|pid:none) Macaca fascicularis brain cDNA clo...   201   1e-50
AB374952_1(AB374952|pid:none) Solea senegalensis RPL17 mRNA for ...   201   1e-50
(P18621) RecName: Full=60S ribosomal protein L17; AltName: Full=...   200   3e-50
(P24049) RecName: Full=60S ribosomal protein L17; AltName: Full=...   199   4e-50
BC094640_1(BC094640|pid:none) Mus musculus ribosomal protein L17...   199   4e-50
AB098987_1(AB098987|pid:none) Bos taurus mRNA for similar to rib...   199   4e-50
AY650298_1(AY650298|pid:none) Macaca fascicularis ribosomal prot...   197   2e-49
BT043736_1(BT043736|pid:none) Salmo salar clone HM6_0489 ribosom...   196   4e-49
(A0NGY0) RecName: Full=60S ribosomal protein L17;                     195   7e-49
BC077192_1(BC077192|pid:none) Xenopus laevis MGC78885 protein, m...   194   1e-48

 psg: 0.55  gvh: 0.46  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.14
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for FC-BN21 is mit

>FC-BN21E.Seq
AAAATGACAAAACCAGTTTATTCAAAGACCCCATCCAACCCAGAAAAATCCTGCAAATCT
CGTGGTTCTAACTTAAGAATTCACTTCAAGAACACCAGAGAATCAGCTATGGCCATCAAA
GGTATGCTCTTAACCAGAGCTAAAGCTTACTTAAACAACGTTTTAGCCCATAGAGAATGT
ATCCCATTCAGAAGATTCAAAGGTGGTGTAGGTCGTACTGGTCAAGCCAAAATTTTCGGT
ACCAGTCAAGGTAGATGGCCAAAGAAATCTGTTGAACACATTTTATCACTCCTCCAAAAT
GCTGAAGCCAACGCTGAAGCTAAGGGTTTAAATGTTGAAAAACTCAAGATCGCTCACGTT
CAAGTTCAACGTGCTCAACAACAACGTAGAAGAACCTACAGAGCACATGGTCGTATCAAT
CCATACATGTGTTCACCATCAACTGTTGAATTCATCCTCACTGAAGTTGAAAAAGCTGTC
CCAAAACCAGCTGAAGAATCCGCCCAAAAGAAGAAATCTGTCGCCACCCAAGAAATCTCT
GCTTAAATAAAAAAATATAATTATTAAAAAAAAAAAAAAAAAAAAAAA