FC-BN17
Library FC
(Link to library)
Clone ID FC-BN17
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15062-1
Original site URL
Representative seq. ID FC-BN17Z
(Link to Original site)
Representative DNA sequence
>FC-BN17 (FC-BN17Q) /CSM/FC/FC-BN/FC-BN17Q.Seq.d/
XXXXXXXXXXAATAACAATAATAATAATAATAACAATAATAATGAATTTTCAAAAAGATC
TTATGGACATAATCAAAATCAAATACCACATCATCAACATAAAGGTGAAAGAAAACATCC
AACAATTGGTCAAAATAGAAATTCAAATAATAATACACAATCACAACAACGTAATAAATT
TTCTGATAGATTTGCTCATCAACGTCAATCAAGTTATGATTATGACAATCCATTCGAATT
TAAAGAATTTAACAATCATTTAAATAATGATGAACTTTATCCATTTGGTGAGGAGGAAGA
AAATAATTTCGATATGGATAATTTTGCCTCACCATCATCAGCTCTAAATAGATATAGATC
AAATAGTGGTAGAGATAACCTTCCAAGAATGTTTAGAAGATTTTAATAAATATATTTTAA
TTTTTTTTTAAATTTTCAATAGATAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAATT
ATTTTAAAAATAAAAAAAAAA
sequence update 1998. 4.16
Translated Amino Acid sequence
---NNNNNNNNNNEFSKRSYGHNQNQIPHHQHKGERKHPTIGQNRNSNNNTQSQQRNKFS
DRFAHQRQSSYDYDNPFEFKEFNNHLNNDELYPFGEEEENNFDMDNFASPSSALNRYRSN
SGRDNLPRMFRRF**iyfnfflnfq*iiikkkkkkkkklf*k*kk


Translated Amino Acid sequence (All Frames)
Frame A:
---itiiiiitiimnfqkdlmdiikikyhiinikvkeniqqlvkieiqiiihnhnnvinf
lidllinvnqvmimtihsnlknltii*immnfihlvrrkkiisiwiilphhhql*ididq
ivveitfqecledfnkyiliff*ifnr***kkkkkkkknyfknkkk


Frame B:
---*q*****q***ifkkilwt*sksnttsst*r*kktsnnwsk*kfk**ytittt**if
**icsstsikl*l*qsiri*ri*qsfk***tlsiw*ggrk*fryg*fcltiissk*i*ik
*w*r*psknv*kilinif*fffkfsidnnkkkkkkkkkiilkikkk


Frame C:
---NNNNNNNNNNEFSKRSYGHNQNQIPHHQHKGERKHPTIGQNRNSNNNTQSQQRNKFS
DRFAHQRQSSYDYDNPFEFKEFNNHLNNDELYPFGEEEENNFDMDNFASPSSALNRYRSN
SGRDNLPRMFRRF**iyfnfflnfq*iiikkkkkkkkklf*k*kk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-BN17 (FC-BN17Q) /CSM/FC/FC-BN/FC-BN17Q.Seq.d/ 753 0.0
SSG568 (SSG568Q) /CSM/SS/SSG5-C/SSG568Q.Seq.d/ 708 0.0
CFI257 (CFI257Q) /CSM/CF/CFI2-C/CFI257Q.Seq.d/ 694 0.0
SFF466 (SFF466Q) /CSM/SF/SFF4-C/SFF466Q.Seq.d/ 668 0.0
CHD778 (CHD778Q) /CSM/CH/CHD7-D/CHD778Q.Seq.d/ 613 e-174
VHP306 (VHP306Q) /CSM/VH/VHP3-A/VHP306Q.Seq.d/ 38 0.12
VHI601 (VHI601Q) /CSM/VH/VHI6-A/VHI601Q.Seq.d/ 38 0.12
VHE890 (VHE890Q) /CSM/VH/VHE8-D/VHE890Q.Seq.d/ 38 0.12
VFJ239 (VFJ239Q) /CSM/VF/VFJ2-B/VFJ239Q.Seq.d/ 38 0.12
SSH392 (SSH392Q) /CSM/SS/SSH3-D/SSH392Q.Seq.d/ 38 0.12

own update 2003.10.31
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC145217|AC145217.1 Homo sapiens chromosome UNK clone RP11-527C10, complete sequence. 38 0.005 6
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2. 34 0.026 11
AC125766|AC125766.5 Homo sapiens 3 BAC RP11-62F21 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 40 0.080 6
BX072568|BX072568.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 42 0.10 8
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. 32 0.56 8
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2. 34 0.57 8
AC025828|AC025828.3 Homo sapiens, clone RP11-13I24, complete sequence. 36 0.63 6
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 32 0.75 14
AQ580908|AQ580908.1 RPCI-11-465E8.TJ RPCI-11 Homo sapiens genomic clone RPCI-11- 465E8, genomic survey sequence. 38 0.81 2
AQ413371|AQ413371.1 RPCI-11-195M15.TV RPCI-11 Homo sapiens genomic clone RPCI-11-195M15, genomic survey sequence. 38 0.85 2
dna update 2003. 7.13
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 407,201,809
protein update 2009. 4.14
PSORT

psg: 0.75 gvh: 0.16 alm: 0.72 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.10
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
12.0 %: cytoskeletal

>> prediction for FC-BN17 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-BN17Z
3' end seq.
>FC-BN17Z.Seq
----------AATAACAATAATAATAATAATAACAATAATAATGAATTTTCAAAAAGATC
TTATGGACATAATCAAAATCAAATACCACATCATCAACATAAAGGTGAAAGAAAACATCC
AACAATTGGTCAAAATAGAAATTCAAATAATAATACACAATCACAACAACGTAATAAATT
TTCTGATAGATTTGCTCATCAACGTCAATCAAGTTATGATTATGACAATCCATTCGAATT
TAAAGAATTTAACAATCATTTAAATAATGATGAACTTTATCCATTTGGTGAGGAGGAAGA
AAATAATTTCGATATGGATAATTTTGCCTCACCATCATCAGCTCTAAATAGATATAGATC
AAATAGTGGTAGAGATAACCTTCCAAGAATGTTTAGAAGATTTTAATAAATATATTTTAA
TTTTTTTTTAAATTTTCAATAGATAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAATT
ATTTTAAAAATAAAAAAAAAA
Length of 3' end seq. 491
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -