>FC-BN15 (FC-BN15Q) /CSM/FC/FC-BN/FC-BN15Q.Seq.d/
XXXXXXXXXXCTGATATAACAACAACAACAACCAATACAAATAATAATACAAATAATACA
AATAATAATAATACAGCATCACTTTTAGATGATCTAGATTTTACTTCAACCACCACCACT
ACTACAACCACTACAAATACAAATACTACTCAAAAAGTTGCATCACCACTTTCATCACCA
TCACCAATTAGAAAGAATGATTCAATTGCTTCTCCACAAAAACAACAACAACAACAACAA
GATATTAATATAACTGCACCACCACCCATTGATCCAAGTCCAGTTGATCATGATTTAGTT
TTAGAACCAACTCCAATTATTAATACTGTATCACCAACTAAAACTTCTCCAACTGCCGAT
CTCTCATTTTTAGATAATATACCAGTCGATCATGATGAAGAGGATGAATTTTAAAAAAAA
AAAAATTTTATTATGGACAATAATTTCACTCATGGTAAAATAAAAAAATATAAACAATAA
TAATAATAATAATAAAAATAATAATATATATAAAAAAAAAAAAATATCTTCCC

---DITTTTTNTNNNTNNTNNNNTASLLDDLDFTSTTTTTTTTTNTNTTQKVASPLSSPS
PIRKNDSIASPQKQQQQQQDINITAPPPIDPSPVDHDLVLEPTPIINTVSPTKTSPTADL
SFLDNIPVDHDEEDEF*kkknfimdnnfthgkikkykq******k**yi*kkknif

Frame A:
---*ynnnnnqyk**yk*yk***ysitfr*srfyfnhhhyynhykykyyskscittfiti
tn*ke*fncfstkttttttry*yncttth*skss*s*fsfrtnsny*ycitn*nfsncrs
lifr*ytsrs**rg*ilkkkkfyygq*fhsw*nkki*tiiiiiikiiiyikkkkylp


Frame B:
---DITTTTTNTNNNTNNTNNNNTASLLDDLDFTSTTTTTTTTTNTNTTQKVASPLSSPS
PIRKNDSIASPQKQQQQQQDINITAPPPIDPSPVDHDLVLEPTPIINTVSPTKTSPTADL
SFLDNIPVDHDEEDEF*kkknfimdnnfthgkikkykq******k**yi*kkknif


Frame C:
---i*qqqqpiqiiiqiiqiiiiqhhf*mi*illqpppllqplqiqillkklhhhfhhhh
qlermiqlllhknnnnnnkili*lhhhpliqvqlimi*f*nqlqllilyhqlkllqlpis
hf*iiyqsimmkrmnfkkkkillwtiislmvk*kninnnnnnnknnniykkkkiss

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BN15 (FC-BN15Q) /CSM/FC/FC-BN/FC-BN15Q.Seq.d/                      341   7e-93
SSK417 (SSK417Q) /CSM/SS/SSK4-A/SSK417Q.Seq.d/                        333   2e-90
SLH410 (SLH410Q) /CSM/SL/SLH4-A/SLH410Q.Seq.d/                        333   2e-90
VSE168 (VSE168Q) /CSM/VS/VSE1-C/VSE168Q.Seq.d/                        311   6e-84
VHK225 (VHK225Q) /CSM/VH/VHK2-B/VHK225Q.Seq.d/                        293   1e-78
VHJ171 (VHJ171Q) /CSM/VH/VHJ1-C/VHJ171Q.Seq.d/                        293   1e-78
VHH424 (VHH424Q) /CSM/VH/VHH4-A/VHH424Q.Seq.d/                        293   1e-78
VHG354 (VHG354Q) /CSM/VH/VHG3-C/VHG354Q.Seq.d/                        293   1e-78
VHD777 (VHD777Q) /CSM/VH/VHD7-D/VHD777Q.Seq.d/                        293   1e-78
VHA788 (VHA788Q) /CSM/VH/VHA7-D/VHA788Q.Seq.d/                        293   1e-78

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

B67199|B67199.1 CpG0015B CpIOWAgDNA1 Cryptosporidium parvum genomic, DNA sequence.    50  0.027  1
AP005379|AP005379.2 Homo sapiens genomic DNA, chromosome 11 clone:CMF9-47A13, complete sequence.    50  0.027  1
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    50  0.042  5
AC116978|AC116978.1 Dictyostelium discoideum chromosome 2 map 4846697-4874480 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    42  0.048  2
AC115578|AC115578.2 Dictyostelium discoideum chromosome 2 map complement(5018024-5005561) strain AX4, complete sequence.    40  0.087  2
AC008284|AC008284.6 Drosophila melanogaster, chromosome 3R, region 96C-96D, BAC clone BACR03M22, complete sequence.    48  0.11  1
AC008367|AC008367.4 Drosophila melanogaster, chromosome 3R, region 96C-96C, BAC clone BACR10P10, complete sequence.    48  0.11  1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    44  0.15  8
AZ879155|AZ879155.1 RPCI-23-194A3.TV RPCI-23 Mus musculus genomic clone RPCI-23-194A3, DNA sequence.    34  0.25  2
AZ286754|AZ286754.1 RPCI-23-442K14.TJ RPCI-23 Mus musculus genomic clone RPCI-23-442K14 , DNA sequence.    34  0.25  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YD8) RecName: Full=Coatomer subunit beta'; AltName: Full=Bet...   149   4e-35
AC146785_24(AC146785|pid:none) Medicago truncatula clone mth2-4h...    34   1.9
AC149301_21(AC149301|pid:none) Solanum demissum chromosome 5 clo...    33   3.2
BC122458_1(BC122458|pid:none) Danio rerio hypothetical protein L...    33   3.2
AK064397_1(AK064397|pid:none) Oryza sativa Japonica Group cDNA c...    33   3.2
AC149288_8(AC149288|pid:none) Solanum demissum chromosome 5 clon...    33   4.2
AC149303_16(AC149303|pid:none) Medicago truncatula clone mth2-76...    33   5.5
AC149290_7(AC149290|pid:none) Solanum demissum chromosome 5 clon...    32   7.2
(Q9ZT16) RecName: Full=Classical arabinogalactan protein 4; Flag...    32   7.2
BT066458_1(BT066458|pid:none) Zea mays full-length cDNA clone ZM...    32   7.2

 psg: 0.75  gvh: 0.40  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for FC-BN15 is cyt

>FC-BN15Z.Seq
----------CTGATATAACAACAACAACAACCAATACAAATAATAATACAAATAATACA
AATAATAATAATACAGCATCACTTTTAGATGATCTAGATTTTACTTCAACCACCACCACT
ACTACAACCACTACAAATACAAATACTACTCAAAAAGTTGCATCACCACTTTCATCACCA
TCACCAATTAGAAAGAATGATTCAATTGCTTCTCCACAAAAACAACAACAACAACAACAA
GATATTAATATAACTGCACCACCACCCATTGATCCAAGTCCAGTTGATCATGATTTAGTT
TTAGAACCAACTCCAATTATTAATACTGTATCACCAACTAAAACTTCTCCAACTGCCGAT
CTCTCATTTTTAGATAATATACCAGTCGATCATGATGAAGAGGATGAATTTTAAAAAAAA
AAAAATTTTATTATGGACAATAATTTCACTCATGGTAAAATAAAAAAATATAAACAATAA
TAATAATAATAATAAAAATAATAATATATATAAAAAAAAAAAAATATCTTCCC