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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BN10
Library FC
(Link to library)
Clone ID FC-BN10
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15635-1
Original site URL
Representative seq. ID FC-BN10P
(Link to Original site)
Representative DNA sequence 
>FC-BN10 (FC-BN10Q) /CSM/FC/FC-BN/FC-BN10Q.Seq.d/
GAAGATAATGATGATCAATTATAAATTTTTTAAAAAAAACAAAAAAAAAAGTAATAACAG
TAAATAAATAAATAAAAAAATGATGAAAGCCAATAAAATTATAAAATTATTTAAAGGTAC
AGTTATACATTCAATAGAGATTGGTAAAGTTGAAATTTTACCAAATTCATTAATTGGTAT
TGATGAAGATGGTGTAATTCAACATATGAAATCAAATTATGAAGATTTGAAACAATTAGA
AAAGGATGTAACAATGATTTGTACAGATAATGGTATTAATGAGCAAGAATCAGTGATTGA
TATGGGTAATAAATTTTTAATTCCAGGTTTTATTGATACACATGCTCATGCACCACAATA
TCATAATGCAGGCACAGGTACAGATTTACCATTATTAAAATGGTTAGAGAAATACACATT
CCCAGTAGAGAGTAAATTCAAGGATTTAATATTTGCGGAGAATGTTTATGGTAAAGTTGT
AGACCGTATGTTACGTCATGGTACCACTACCTGTTGTTATTATGCAACCATTCATTTGGA
GGCAAGTGAACTATTGGCAGAGATTGTATCAAAACGTGGTCAACGTGCATTCATTGGGAA
AGTTTGTATGGATCGTCATTCACCAGATCATTTACGTTGGAGACTACCGGAACAATCCAT
TTXXXXXXXXXXAAGAGATTAAATTAATTTCAACTCAACAAACTGCCATCTCACATTGTC
CAATTAGTAATTTCACTTTAAGTAGTGGTAATCTTGATGTTAGAAAGGTTTTAGAAGCAA
ATATTAAATTGGGTTTTAGGTTCTGATATATCTGGTGGTTATCATCCTTCCATTCTTCAA
GTTATTCGTGACTCTATCAAATGTTCAAATTCTCACTTTTTCAACAATGGTAATCATACA
CCATTAACCTTTGAAGAGGCTTTCTATTTAGCAACTGTTGGTGGTAGTAAAGTTGTAAAC
TTGGATCATCGTATTGGTAATTTCATTGTTGGTAAAGATTTTGATGCTCAAATCATTGAT
CCCCTCGTTCAAAATTCACCATTTGATTGTTTCGATGGTGAAACTTTAAAAGATATTTTC
CAAAAATTCATTTATCTTGATGATGATAGAAATCTTTCATCATTATATATTAAAGGACTA
AAATTAAATTTTAAATAAATATATAAATAATTTTTATTTTTTTTTAAAAAAAAAAA
sequence update 1998. 4.25
Translated Amino Acid sequence 
kimminykffkknkkksnnsk*INKKMMKANKIIKLFKGTVIHSIEIGKVEILPNSLIGI
DEDGVIQHMKSNYEDLKQLEKDVTMICTDNGINEQESVIDMGNKFLIPGFIDTHAHAPQY
HNAGTGTDLPLLKWLEKYTFPVESKFKDLIFAENVYGKVVDRMLRHGTTTCCYYATIHLE
ASELLAEIVSKRGQRAFIGKVCMDRHSPDHLRWRLPEQSI---

---EIKLISTQQTAISHCPISNFTLSSGNLDVRKVLEANIKLGFRF*yiwwlssfhsssy
s*lyqmfkfslfqqw*sytinl*rgflfsncww**scklgssyw*fhcw*rf*csnh*sp
rskfti*lfrw*nfkryfpkihls****ksfiiiy*rtkikf*ini*iififf*kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ednddql*if*kkqkkk**q*ink*kndesq*nykii*rysytfnrdw*s*nftkfinwy
**rwcnstyeikl*rfetirkgcnndlyr*wy**arisd*yg**ifnsrfy*ytcsctti
s*crhryrftiikmvreihipsre*iqgfnicgeclw*scrpyvtswyhyllllcnhsfg
gk*tigrdciktwstcihweslygssftrsftlettgtih---

---krln*fqlnklpshivqlvisl*vvvilmlerf*kqilnwvlgsdisggyhpsilqv
irdsikcsnshffnngnhtpltfeeafylatvggskvvnldhrignfivgkdfdaqiidp
lvqnspfdcfdgetlkdifqkfiyldddrnlsslyikglklnfk*iyk*flfffkkk

Frame B:
kimminykffkknkkksnnsk*INKKMMKANKIIKLFKGTVIHSIEIGKVEILPNSLIGI
DEDGVIQHMKSNYEDLKQLEKDVTMICTDNGINEQESVIDMGNKFLIPGFIDTHAHAPQY
HNAGTGTDLPLLKWLEKYTFPVESKFKDLIFAENVYGKVVDRMLRHGTTTCCYYATIHLE
ASELLAEIVSKRGQRAFIGKVCMDRHSPDHLRWRLPEQSI---

---rd*infnstnchltlsn**fhfk*w*s*c*kgfrsky*igf*vliylvviilpffkl
fvtlsnvqiltfstmviihh*plkrlsi*qllvvvkl*twiivlvisllvkilmlkslip
sfkihhlivsmvkl*kifsknsfilmmieifhhyilkd*n*ilnkyinnfyfflkkk

Frame C:
r***siinflkktkkkvitvnk*ikk**kpikl*nylkvqlyiq*rlvklkfyqih*lvl
mkmv*fni*nqimki*nn*krm*q*fvqimvlmsknq*liwvinf*fqvllihmlmhhni
imqaqvqiyhy*ng*rnthsq*rvnsri*ylrrmfmvkl*tvcyvmvplpvvimqpfiwr
qvnywqrlyqnvvnvhslgkfvwivihqiiyvgdyrnnpf---

---EIKLISTQQTAISHCPISNFTLSSGNLDVRKVLEANIKLGFRF*yiwwlssfhsssy
s*lyqmfkfslfqqw*sytinl*rgflfsncww**scklgssyw*fhcw*rf*csnh*sp
rskfti*lfrw*nfkryfpkihls****ksfiiiy*rtkikf*ini*iififf*kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BN10 (FC-BN10Q) /CSM/FC/FC-BN/FC-BN10Q.Seq.d/                     2032   0.0
FC-535 (FC-535Q) /CSM/CG/CG-FC/FC-535Q.Seq.d/                        1084   0.0
VFO805 (VFO805Q) /CSM/VF/VFO8-A/VFO805Q.Seq.d/                       1017   0.0
VFI612 (VFI612Q) /CSM/VF/VFI6-A/VFI612Q.Seq.d/                       1017   0.0
VFF683 (VFF683Q) /CSM/VF/VFF6-D/VFF683Q.Seq.d/                       1017   0.0
SSI524 (SSI524Q) /CSM/SS/SSI5-A/SSI524Q.Seq.d/                       1017   0.0
SFB492 (SFB492Q) /CSM/SF/SFB4-D/SFB492Q.Seq.d/                       1017   0.0
CHA557 (CHA557Q) /CSM/CH/CHA5-C/CHA557Q.Seq.d/                       1017   0.0
CFD785 (CFD785Q) /CSM/CF/CFD7-D/CFD785Q.Seq.d/                       1017   0.0
AFD208 (AFD208Q) /CSM/AF/AFD2-A/AFD208Q.Seq.d/                       1017   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.  1017  0.0  4
AL440837|AL440837.1 T3 end of clone BD0AA015B05 of library BD0AA from strain CBS 94 of  Candida tropicalis.    40  0.007  3
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38  0.008  12
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    60  0.046  6
AC015687|AC015687.11 Homo sapiens chromosome , clone RP11-18M5, complete sequence.    50  0.063  1
AC090082|AC090082.3 Homo sapiens chromosome 8 clone CTD-2294B10 map 8, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    50  0.063  1
AL163217|AL163217.1 Homo sapiens genomic DNA, chromosome 21...    42  0.14  8
AC138122|AC138122.2 Homo sapiens 3 BAC RP11-336E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38  0.26  2
AC063935|AC063935.12 Homo sapiens chromosome 3 clone CTC-316G23, WORKING DRAFT SEQUENCE, 34 unordered pieces.    38  0.29  5
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38  0.80  8
dna update 2003. 7.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY924419_1(AY924419|pid:none) Trimastix pyriformis ATCC50562 gua...   156   1e-36
AF144745_1(AF144745|pid:none) Homo sapiens guanine aminohydrolas...   153   1e-35
AB033084_1(AB033084|pid:none) Homo sapiens mRNA for KIAA1258 pro...   153   1e-35
(Q9Y2T3) RecName: Full=Guanine deaminase;          Short=Guanase...   153   1e-35
AK157014_1(AK157014|pid:none) Mus musculus activated spleen cDNA...   152   2e-35
AF369885_1(AF369885|pid:none) Mus spretus guanine deaminase (Gda...   152   2e-35
AF245172_1(AF245172|pid:none) Rattus norvegicus guanine deaminas...   152   3e-35
(Q5RAV9) RecName: Full=Guanine deaminase;          Short=Guanase...   150   1e-34
BC082390_1(BC082390|pid:none) Xenopus laevis hypothetical protei...   147   9e-34
CP000499_600(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...   146   2e-33
protein update 2009. 4.14
PSORT 

 psg: 0.73  gvh: 0.32  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for FC-BN10 is nuc
5' end seq. ID FC-BN10F
5' end seq. 
>FC-BN10F.Seq
GAAGATAATGATGATCAATTATAAATTTTTTAAAAAAAACAAAAAAAAAAGTAATAACAG
TAAATAAATAAATAAAAAAATGATGAAAGCCAATAAAATTATAAAATTATTTAAAGGTAC
AGTTATACATTCAATAGAGATTGGTAAAGTTGAAATTTTACCAAATTCATTAATTGGTAT
TGATGAAGATGGTGTAATTCAACATATGAAATCAAATTATGAAGATTTGAAACAATTAGA
AAAGGATGTAACAATGATTTGTACAGATAATGGTATTAATGAGCAAGAATCAGTGATTGA
TATGGGTAATAAATTTTTAATTCCAGGTTTTATTGATACACATGCTCATGCACCACAATA
TCATAATGCAGGCACAGGTACAGATTTACCATTATTAAAATGGTTAGAGAAATACACATT
CCCAGTAGAGAGTAAATTCAAGGATTTAATATTTGCGGAGAATGTTTATGGTAAAGTTGT
AGACCGTATGTTACGTCATGGTACCACTACCTGTTGTTATTATGCAACCATTCATTTGGA
GGCAAGTGAACTATTGGCAGAGATTGTATCAAAACGTGGTCAACGTGCATTCATTGGGAA
AGTTTGTATGGATCGTCATTCACCAGATCATTTACGTTGGAGACTACCGGAACAATCCAT
TT----------
Length of 5' end seq. 662
3' end seq. ID FC-BN10Z
3' end seq. 
>FC-BN10Z.Seq
----------AAGAGATTAAATTAATTTCAACTCAACAAACTGCCATCTCACATTGTCCA
ATTAGTAATTTCACTTTAAGTAGTGGTAATCTTGATGTTAGAAAGGTTTTAGAAGCAAAT
ATTAAATTGGGTTTTAGGTTCTGATATATCTGGTGGTTATCATCCTTCCATTCTTCAAGT
TATTCGTGACTCTATCAAATGTTCAAATTCTCACTTTTTCAACAATGGTAATCATACACC
ATTAACCTTTGAAGAGGCTTTCTATTTAGCAACTGTTGGTGGTAGTAAAGTTGTAAACTT
GGATCATCGTATTGGTAATTTCATTGTTGGTAAAGATTTTGATGCTCAAATCATTGATCC
CCTCGTTCAAAATTCACCATTTGATTGTTTCGATGGTGAAACTTTAAAAGATATTTTCCA
AAAATTCATTTATCTTGATGATGATAGAAATCTTTCATCATTATATATTAAAGGACTAAA
ATTAAATTTTAAATAAATATATAAATAATTTTTATTTTTTTTTAAAAAAAAAAA
Length of 3' end seq. 524
Connected seq. ID FC-BN10P
Connected seq. 
>FC-BN10P.Seq
GAAGATAATGATGATCAATTATAAATTTTTTAAAAAAAACAAAAAAAAAAGTAATAACAG
TAAATAAATAAATAAAAAAATGATGAAAGCCAATAAAATTATAAAATTATTTAAAGGTAC
AGTTATACATTCAATAGAGATTGGTAAAGTTGAAATTTTACCAAATTCATTAATTGGTAT
TGATGAAGATGGTGTAATTCAACATATGAAATCAAATTATGAAGATTTGAAACAATTAGA
AAAGGATGTAACAATGATTTGTACAGATAATGGTATTAATGAGCAAGAATCAGTGATTGA
TATGGGTAATAAATTTTTAATTCCAGGTTTTATTGATACACATGCTCATGCACCACAATA
TCATAATGCAGGCACAGGTACAGATTTACCATTATTAAAATGGTTAGAGAAATACACATT
CCCAGTAGAGAGTAAATTCAAGGATTTAATATTTGCGGAGAATGTTTATGGTAAAGTTGT
AGACCGTATGTTACGTCATGGTACCACTACCTGTTGTTATTATGCAACCATTCATTTGGA
GGCAAGTGAACTATTGGCAGAGATTGTATCAAAACGTGGTCAACGTGCATTCATTGGGAA
AGTTTGTATGGATCGTCATTCACCAGATCATTTACGTTGGAGACTACCGGAACAATCCAT
TT----------AAGAGATTAAATTAATTTCAACTCAACAAACTGCCATCTCACATTGTC
CAATTAGTAATTTCACTTTAAGTAGTGGTAATCTTGATGTTAGAAAGGTTTTAGAAGCAA
ATATTAAATTGGGTTTTAGGTTCTGATATATCTGGTGGTTATCATCCTTCCATTCTTCAA
GTTATTCGTGACTCTATCAAATGTTCAAATTCTCACTTTTTCAACAATGGTAATCATACA
CCATTAACCTTTGAAGAGGCTTTCTATTTAGCAACTGTTGGTGGTAGTAAAGTTGTAAAC
TTGGATCATCGTATTGGTAATTTCATTGTTGGTAAAGATTTTGATGCTCAAATCATTGAT
CCCCTCGTTCAAAATTCACCATTTGATTGTTTCGATGGTGAAACTTTAAAAGATATTTTC
CAAAAATTCATTTATCTTGATGATGATAGAAATCTTTCATCATTATATATTAAAGGACTA
AAATTAAATTTTAAATAAATATATAAATAATTTTTATTTTTTTTTAAAAAAAAAAA
Length of connected seq. 1186
Full length Seq ID -
Full length Seq. -
Length of full length seq. -