>FC-BN07 (FC-BN07Q) /CSM/FC/FC-BN/FC-BN07Q.Seq.d/
XXXXXXXXXXCCAAAGACTCATGGTGTTACCGAATTAAAACCAAGCAGAAACTTAAGATC
CGTTGCTGAAGAACGTGTTGGTCGTCGTTGTCCAAATCTCCGTGTTCTCAACTCATACTG
GGTTAACCAAGATTCAACCTACAAATATTATGAAGTCATCTTAGTTGATAACTCTCACAA
TGCCATCCGTAACGACCCACGTTACAACTGGATCTGTAAACCAGTCCACAAACATAGAGA
ATTAAGAGGTTTAACCTCCGCTGGTATCAAAGCCCGTGGTCTCCGTAGAAAAGGTACCCA
CAGAGCCCGCAAAACTAGACCATCAAGACAAGCCAACTACAAACGTAGAAACACCGTCGT
TTTCCACAGATACAGATAAACAAACAAACATTAATATTCATTTTGTTTGTGTCCACGTAT
TCTAATAAAATGTTATATTTTCCCCACCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---KTHGVTELKPSRNLRSVAEERVGRRCPNLRVLNSYWVNQDSTYKYYEVILVDNSHNA
IRNDPRYNWICKPVHKHRELRGLTSAGIKARGLRRKGTHRARKTRPSRQANYKRRNTVVF
HRYR*tnkh*ysfclcprilikcyifptlkkkkkkkkk

Frame A:
---qrlmvlpn*nqaet*dpllknvlvvvvqisvfsthtgltkiqptnimkss*litltm
psvtthvttgsvnqstnien*ev*pplvskpvvsvekvptepakldhqdkpttnvetpsf
stdtdkqtninihfvcvhvf**nvifspp*kkkkkkkkk


Frame B:
---kdswcyriktkqklkirc*rtcwsslskspcsqlilg*prfnlqil*shls**lsqc
hp*rptlqldl*tspqt*rikrfnlrwyqspwsp*krypqspqn*tiktsqlqt*khrrf
pqiqinkqtlifilfvstysnkmlyfphpkkkkkkkkk


Frame C:
---KTHGVTELKPSRNLRSVAEERVGRRCPNLRVLNSYWVNQDSTYKYYEVILVDNSHNA
IRNDPRYNWICKPVHKHRELRGLTSAGIKARGLRRKGTHRARKTRPSRQANYKRRNTVVF
HRYR*tnkh*ysfclcprilikcyifptlkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BN07 (FC-BN07Q) /CSM/FC/FC-BN/FC-BN07Q.Seq.d/                      872   0.0
SLG724 (SLG724Q) /CSM/SL/SLG7-A/SLG724Q.Seq.d/                        848   0.0
SLG705 (SLG705Q) /CSM/SL/SLG7-A/SLG705Q.Seq.d/                        848   0.0
SLG566 (SLG566Q) /CSM/SL/SLG5-C/SLG566Q.Seq.d/                        848   0.0
SLE288 (SLE288Q) /CSM/SL/SLE2-D/SLE288Q.Seq.d/                        848   0.0
SLB831 (SLB831Q) /CSM/SL/SLB8-B/SLB831Q.Seq.d/                        848   0.0
SLB702 (SLB702Q) /CSM/SL/SLB7-A/SLB702Q.Seq.d/                        848   0.0
SLB225 (SLB225Q) /CSM/SL/SLB2-B/SLB225Q.Seq.d/                        848   0.0
FC-AC09 (FC-AC09Q) /CSM/FC/FC-AC/FC-AC09Q.Seq.d/                      848   0.0
FC-060 (FC-060Q) /CSM/CG/CG-FC/FC-060Q.Seq.d/                         848   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   848  0.0  1
AX537022|AX537022.1 Sequence 623 from Patent WO02064766.          72  5e-18  3
AX489322|AX489322.1 Sequence 6622 from Patent WO02053728.         72  2e-12  2
E50132|E50132.1 Porous hollow fiber carrying nucleic acid-immobilized gel,  arrangement of the porous hollow fiber and slice thereof.    46  6e-10  3
AX536664|AX536664.1 Sequence 265 from Patent WO02064766.          46  2e-09  3
Z73201|Z73201.1 S.cerevisiae chromosome XII reading frame ORF YLR029c.    46  5e-09  3
BU833792|BU833792.1 T052E10 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    60  6e-09  3
D14675|D14675.1 S.cerevisiae gene for ribosomal protein YL10, complete cds.    46  6e-09  3
CA928601|CA928601.1 MTU6TR.P4.E12 Aspen root cDNA Library Populus tremuloides cDNA, mRNA sequence.    60  6e-09  3
BU819568|BU819568.1 UA45BPA08 Populus tremula cambium cDNA library Populus tremula cDNA 5 prime, mRNA sequence.    60  6e-09  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86K01) RecName: Full=60S ribosomal protein L15;  &AC116984_54(...   254   9e-67
AB181483_1(AB181483|pid:none) Bromus inermis BiRP2 mRNA for ribo...   182   4e-45
AY037163_1(AY037163|pid:none) Homo sapiens ribosomal protein L15...   177   8e-44
AC090874_14(AC090874|pid:none) Oryza sativa chromosome 3 BAC OJ1...   176   2e-43
AC137610_6(AC137610|pid:none) Oryza sativa (japonica cultivar-gr...   176   2e-43
EU285001_1(EU285001|pid:none) TSA: Elaeis guineensis EgEfMPOB001...   176   3e-43
EF145338_1(EF145338|pid:none) Populus trichocarpa clone WS01123_...   175   4e-43
CS559694_1(CS559694|pid:none) Sequence 281 from Patent WO2006032...   173   2e-42
BT040900_1(BT040900|pid:none) Zea mays full-length cDNA clone ZM...   173   2e-42
(O65050) RecName: Full=60S ribosomal protein L15-1;  &AF051207_1...   173   2e-42

 psg: 0.52  gvh: 0.29  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for FC-BN07 is nuc

>FC-BN07Z.Seq
----------CCAAAGACTCATGGTGTTACCGAATTAAAACCAAGCAGAAACTTAAGATC
CGTTGCTGAAGAACGTGTTGGTCGTCGTTGTCCAAATCTCCGTGTTCTCAACTCATACTG
GGTTAACCAAGATTCAACCTACAAATATTATGAAGTCATCTTAGTTGATAACTCTCACAA
TGCCATCCGTAACGACCCACGTTACAACTGGATCTGTAAACCAGTCCACAAACATAGAGA
ATTAAGAGGTTTAACCTCCGCTGGTATCAAAGCCCGTGGTCTCCGTAGAAAAGGTACCCA
CAGAGCCCGCAAAACTAGACCATCAAGACAAGCCAACTACAAACGTAGAAACACCGTCGT
TTTCCACAGATACAGATAAACAAACAAACATTAATATTCATTTTGTTTGTGTCCACGTAT
TCTAATAAAATGTTATATTTTCCCCACCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA