FC-BN06
Library FC
(Link to library)
Clone ID FC-BN06
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16016-1
Original site URL
Representative seq. ID FC-BN06P
(Link to Original site)
Representative DNA sequence
>FC-BN06 (FC-BN06Q) /CSM/FC/FC-BN/FC-BN06Q.Seq.d/
ATCAATCTAAAAAAATAAAATGGCACCAGCAAAAGCAGCAAAAGCAGCAACTAAATCAAA
AAGCACACAAAATAAAGTTGTAAAGAAATCAATTGGAGATTCAAAGAAACCAGTTTCAAC
CAATAAAGGTGTTGGTAAAGATAATATAAAAGTTAAAGAATTTAAATCCGATAAAAAACC
ATTAAATAATAAATATAACGACAAAAAAAAACACAACCACCACCACAACAACAGATAAAG
AAAATGAATCAAATAAATCAAATGAACCAAAAAAGAAATTAACAAAAAAAGAGAAAAGAG
AAGAGAAATTTGAAAAGAAATCAAAATTTGATAAGAATCATTCATTAGTTAGAGATTTAA
AGATATTATGGGTTAAAATTAAAGAGATTAAATTATCAAGTGAAGAAAGAGCAACTTTGA
TTGAACAATTAACTCAAAAACTTAAAGGAAACGTATTGAATGTCATTGTCAAACATGACG
CATCACGTGTAGTCCAAACCCTATTAAAGTATGGCAATGAAGCACAAAGAGAGATTGTAT
TCAAAGAATTAAAAGATCAAGAACTTACAATTTCAAAGACACAATATGGTAGATTTTTAA
TTTTAAACTCTTAAAATACGGTACTGAAGAACAAAGXXXXXXXXXXCTCCTCACTAAATC
AATGGTGAACAGTTGTGGTAATTCCACATGAATTAGTAAAAAGATCGTGACCAAGAGAAA
GAATGTTGAATGGATCTCACCAAATTAATCGAACTTTGTTCAAATCACACTCAAGACTTA
CTCTCAAGTCAATGGGGTACAAAGGTTTTAAATCAAACTTTAAAGAATGCCGATGGAAAT
AAAATCATCTTAATGAAGAGAATCTTGGATCTCCTTGAACAAGAAGAGTTCCTTGAAGAA
CAACATATTAACATTCAATCACTCTTACGTAATGATCATATTAAATCAACTGATCTTCCA
CAACAATTGATTGAAAAACATAATTGGATCGATCTTTGTACTAAAAATCAAAATATCGTT
TACATCTATCGTGATCTCTTAAAATCTTTACCAAATGATCTCAAAGATAAAGAAACTATT
CAATTAAAAAAATCAAAATCAAAATTAGAAGCTACCAAATTTAAAGGTATTGAAAATTTA
TTTAATTTAAAAGATGATTTAGAATTACAACAACAAAATGATGAAAAGAAACCAGTTGAA
GATAAAAAGAAACCAGCTGCTGCTGCTACAACTGTCACCAAAAAAGTAACTGAAGAACCA
ACTACTACCACAACTACTATCACCACATCTAAAAAAGTTACAAAAACTACAACTACTCCA
GCAGCAGTTACTTCAACAACAATTAAAAAATCAACAATTAAAAAATAAATAAATAAATAT
TAAAAAATA
sequence update 1999. 4.20
Translated Amino Acid sequence
si*knkmapakaakaatkskstqnkvvkksigdskkpvstnkgvgkdnikvkefksdkkp
lnnkyndkkkhnhhhnnr*rk*ik*ik*tkkeinkkrekrrei*keiki**esfis*rfk
dimg*n*rd*iik*rksnfd*tinskt*rkriechcqt*ritcspnpikvwq*stkrdci
qrikrsrtynfkdtiw*IFNFKLLKYGTEEQ---

---LLTKSMVNSCGNST*iskkivtkrknvewispn*snfvqitlktysqvngvqrf*ik
l*rmpmeikss**reswislnkksslknniltfnhsyvmiilnqlifhnn*lkniigsif
vlkikisftsivis*nlyqmiskikklfn*knqnqn*klpnlkvlkiyli*kmi*nynnk
mmkrnqlkikrnqllllqlspkk*lknqllpqllsphlkklqklqllqqqllqqqlknqq
lknk*inikk


Translated Amino Acid sequence (All Frames)
Frame A:
inlkk*ngtsksskssn*ikkhtk*sckeinwrfketsfnq*rcw*r*yks*ri*ir*kt
ik**i*rqkktqpppqqqikkmnqinqmnqkrn*qkkrkekrnlkrnqnliriih*lei*
ryyglklkrlnyqvkkeql*lnn*lknlkety*mslsnmthhv*skpy*smamkhkerly
skn*kiknlqfqrhnmvdf*f*tlkiry*rtk---

---LLTKSMVNSCGNST*iskkivtkrknvewispn*snfvqitlktysqvngvqrf*ik
l*rmpmeikss**reswislnkksslknniltfnhsyvmiilnqlifhnn*lkniigsif
vlkikisftsivis*nlyqmiskikklfn*knqnqn*klpnlkvlkiyli*kmi*nynnk
mmkrnqlkikrnqllllqlspkk*lknqllpqllsphlkklqklqllqqqllqqqlknqq
lknk*inikk

Frame B:
si*knkmapakaakaatkskstqnkvvkksigdskkpvstnkgvgkdnikvkefksdkkp
lnnkyndkkkhnhhhnnr*rk*ik*ik*tkkeinkkrekrrei*keiki**esfis*rfk
dimg*n*rd*iik*rksnfd*tinskt*rkriechcqt*ritcspnpikvwq*stkrdci
qrikrsrtynfkdtiw*IFNFKLLKYGTEEQ---

---sslnqw*tvvviphelvkrs*prermlngshqinrtlfkshsrltlksmgykgfksn
fkecrwk*nhlneenlgsp*trrvp*rtty*hsitlt**sy*in*ssttid*kt*ldrsl
y*kskyrlhls*slkiftk*sqr*rnysikkikikirsyqi*ry*kfi*fkr*fritttk
**kets*r*ketscccynchqksn*rtnyyhnyyhhi*ksyknynyssssyfnnn*kinn
*kink*ilkn

Frame C:
qskkikwhqqkqqkqqlnqkahkikl*rnqleiqrnqfqpikvlvkii*klknlnpiknh
*iinittkkntttttttdkenesnksnepkkkltkkekreekfekkskfdknhslvrdlk
ilwvkikeiklsseeratlieqltqklkgnvlnvivkhdasrvvqtllkygneaqreivf
kelkdqeltisktqygrflilns*ntvlknk---

---ph*ingeqlw*fhmn**kdrdqekec*mdltklielcsnhtqdllssqwgtkvlnqt
lknadgnkiilmkrildlleqeefleeqhiniqsllrndhikstdlpqqliekhnwidlc
tknqnivyiyrdllkslpndlkdketiqlkkskskleatkfkgienlfnlkddlelqqqn
dekkpvedkkkpaaaattvtkkvteepttttttittskkvtkttttpaavtsttikksti
kk*inky*ki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-BN06 (FC-BN06Q) /CSM/FC/FC-BN/FC-BN06Q.Seq.d/ 1907 0.0
VHK249 (VHK249Q) /CSM/VH/VHK2-C/VHK249Q.Seq.d/ 1124 0.0
VHH276 (VHH276Q) /CSM/VH/VHH2-D/VHH276Q.Seq.d/ 46 0.001
CFI769 (CFI769Q) /CSM/CF/CFI7-C/CFI769Q.Seq.d/ 46 0.001
VHO716 (VHO716Q) /CSM/VH/VHO7-A/VHO716Q.Seq.d/ 44 0.006
SLG408 (SLG408Q) /CSM/SL/SLG4-A/SLG408Q.Seq.d/ 44 0.006
VFD643 (VFD643Q) /CSM/VF/VFD6-B/VFD643Q.Seq.d/ 42 0.023
SSM679 (SSM679Q) /CSM/SS/SSM6-D/SSM679Q.Seq.d/ 42 0.023
SSJ870 (SSJ870Q) /CSM/SS/SSJ8-C/SSJ870Q.Seq.d/ 42 0.023
SSI702 (SSI702Q) /CSM/SS/SSI7-A/SSI702Q.Seq.d/ 42 0.023

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 42 1e-04 13
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 42 5e-04 14
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence. 44 0.002 8
AC017818|AC017818.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 44 0.014 4
AC115594|AC115594.2 Dictyostelium discoideum chromosome 2 map 4071862-4101005 strain AX4, complete sequence. 36 0.077 5
AC124966|AC124966.10 Medicago truncatula clone mth2-8i15, WORKING DRAFT SEQUENCE, 6 ordered pieces. 40 0.11 8
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 44 0.14 12
AX347233|AX347233.1 Sequence 2304 from Patent WO0200928. 36 0.17 3
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence. 34 0.20 8
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 34 0.23 9
dna update 2003. 7.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ719494_1(AJ719494|pid:none) Gallus gallus mRNA for hypothetica... 71 8e-11
BC043888_1(BC043888|pid:none) Xenopus laevis hypothetical protei... 68 6e-10
BC161436_1(BC161436|pid:none) Xenopus tropicalis hypothetical pr... 68 6e-10
BC088719_1(BC088719|pid:none) Xenopus laevis hypothetical protei... 68 6e-10
BC135310_1(BC135310|pid:none) Xenopus tropicalis hypothetical pr... 68 6e-10
BC076757_1(BC076757|pid:none) Xenopus laevis MGC83110 protein, m... 67 2e-09
AB028608_3(AB028608|pid:none) Arabidopsis thaliana genomic DNA, ... 65 4e-09
(Q15397) RecName: Full=Pumilio domain-containing protein KIAA002... 65 7e-09
CR382132_720(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 65 7e-09
AL354723_2(AL354723|pid:none) Human DNA sequence from clone RP11... 65 7e-09
protein update 2009. 4.14
PSORT

psg: 0.62 gvh: 0.24 alm: 0.60 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
20.0 %: mitochondrial
20.0 %: cytoplasmic
16.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for FC-BN06 is nuc

5' end seq. ID FC-BN06F
5' end seq.
>FC-BN06F.Seq
ATCAATCTAAAAAAATAAAATGGCACCAGCAAAAGCAGCAAAAGCAGCAACTAAATCAAA
AAGCACACAAAATAAAGTTGTAAAGAAATCAATTGGAGATTCAAAGAAACCAGTTTCAAC
CAATAAAGGTGTTGGTAAAGATAATATAAAAGTTAAAGAATTTAAATCCGATAAAAAACC
ATTAAATAATAAATATAACGACAAAAAAAAACACAACCACCACCACAACAACAGATAAAG
AAAATGAATCAAATAAATCAAATGAACCAAAAAAGAAATTAACAAAAAAAGAGAAAAGAG
AAGAGAAATTTGAAAAGAAATCAAAATTTGATAAGAATCATTCATTAGTTAGAGATTTAA
AGATATTATGGGTTAAAATTAAAGAGATTAAATTATCAAGTGAAGAAAGAGCAACTTTGA
TTGAACAATTAACTCAAAAACTTAAAGGAAACGTATTGAATGTCATTGTCAAACATGACG
CATCACGTGTAGTCCAAACCCTATTAAAGTATGGCAATGAAGCACAAAGAGAGATTGTAT
TCAAAGAATTAAAAGATCAAGAACTTACAATTTCAAAGACACAATATGGTAGATTTTTAA
TTTTAAACTCTTAAAATACGGTACTGAAGAACAAAG----------
Length of 5' end seq. 636
3' end seq. ID FC-BN06Z
3' end seq.
>FC-BN06Z.Seq
----------CTCCTCACTAAATCAATGGTGAACAGTTGTGGTAATTCCACATGAATTAG
TAAAAAGATCGTGACCAAGAGAAAGAATGTTGAATGGATCTCACCAAATTAATCGAACTT
TGTTCAAATCACACTCAAGACTTACTCTCAAGTCAATGGGGTACAAAGGTTTTAAATCAA
ACTTTAAAGAATGCCGATGGAAATAAAATCATCTTAATGAAGAGAATCTTGGATCTCCTT
GAACAAGAAGAGTTCCTTGAAGAACAACATATTAACATTCAATCACTCTTACGTAATGAT
CATATTAAATCAACTGATCTTCCACAACAATTGATTGAAAAACATAATTGGATCGATCTT
TGTACTAAAAATCAAAATATCGTTTACATCTATCGTGATCTCTTAAAATCTTTACCAAAT
GATCTCAAAGATAAAGAAACTATTCAATTAAAAAAATCAAAATCAAAATTAGAAGCTACC
AAATTTAAAGGTATTGAAAATTTATTTAATTTAAAAGATGATTTAGAATTACAACAACAA
AATGATGAAAAGAAACCAGTTGAAGATAAAAAGAAACCAGCTGCTGCTGCTACAACTGTC
ACCAAAAAAGTAACTGAAGAACCAACTACTACCACAACTACTATCACCACATCTAAAAAA
GTTACAAAAACTACAACTACTCCAGCAGCAGTTACTTCAACAACAATTAAAAAATCAACA
ATTAAAAAATAAATAAATAAATATTAAAAAATA
Length of 3' end seq. 743
Connected seq. ID FC-BN06P
Connected seq.
>FC-BN06P.Seq
ATCAATCTAAAAAAATAAAATGGCACCAGCAAAAGCAGCAAAAGCAGCAACTAAATCAAA
AAGCACACAAAATAAAGTTGTAAAGAAATCAATTGGAGATTCAAAGAAACCAGTTTCAAC
CAATAAAGGTGTTGGTAAAGATAATATAAAAGTTAAAGAATTTAAATCCGATAAAAAACC
ATTAAATAATAAATATAACGACAAAAAAAAACACAACCACCACCACAACAACAGATAAAG
AAAATGAATCAAATAAATCAAATGAACCAAAAAAGAAATTAACAAAAAAAGAGAAAAGAG
AAGAGAAATTTGAAAAGAAATCAAAATTTGATAAGAATCATTCATTAGTTAGAGATTTAA
AGATATTATGGGTTAAAATTAAAGAGATTAAATTATCAAGTGAAGAAAGAGCAACTTTGA
TTGAACAATTAACTCAAAAACTTAAAGGAAACGTATTGAATGTCATTGTCAAACATGACG
CATCACGTGTAGTCCAAACCCTATTAAAGTATGGCAATGAAGCACAAAGAGAGATTGTAT
TCAAAGAATTAAAAGATCAAGAACTTACAATTTCAAAGACACAATATGGTAGATTTTTAA
TTTTAAACTCTTAAAATACGGTACTGAAGAACAAAG----------CTCCTCACTAAATC
AATGGTGAACAGTTGTGGTAATTCCACATGAATTAGTAAAAAGATCGTGACCAAGAGAAA
GAATGTTGAATGGATCTCACCAAATTAATCGAACTTTGTTCAAATCACACTCAAGACTTA
CTCTCAAGTCAATGGGGTACAAAGGTTTTAAATCAAACTTTAAAGAATGCCGATGGAAAT
AAAATCATCTTAATGAAGAGAATCTTGGATCTCCTTGAACAAGAAGAGTTCCTTGAAGAA
CAACATATTAACATTCAATCACTCTTACGTAATGATCATATTAAATCAACTGATCTTCCA
CAACAATTGATTGAAAAACATAATTGGATCGATCTTTGTACTAAAAATCAAAATATCGTT
TACATCTATCGTGATCTCTTAAAATCTTTACCAAATGATCTCAAAGATAAAGAAACTATT
CAATTAAAAAAATCAAAATCAAAATTAGAAGCTACCAAATTTAAAGGTATTGAAAATTTA
TTTAATTTAAAAGATGATTTAGAATTACAACAACAAAATGATGAAAAGAAACCAGTTGAA
GATAAAAAGAAACCAGCTGCTGCTGCTACAACTGTCACCAAAAAAGTAACTGAAGAACCA
ACTACTACCACAACTACTATCACCACATCTAAAAAAGTTACAAAAACTACAACTACTCCA
GCAGCAGTTACTTCAACAACAATTAAAAAATCAACAATTAAAAAATAAATAAATAAATAT
TAAAAAATA
Length of connected seq. 1379
Full length Seq ID -
Full length Seq. -
Length of full length seq. -