>FC-BN02 (FC-BN02Q) /CSM/FC/FC-BN/FC-BN02Q.Seq.d/
XXXXXXXXXXTCAGATATTACAAAAATATCGGTCTTGGTTACAGAACCCCAAAGGATGCC
ATCGAAGGTACCTACATCGATAAGAAATGTCCATTCCCCTCAGACGTTTCAATCCGTGGT
GCTATCCTCCGTGGTACCGTCATCTCAACCAAAATGGGAAGAACCCTTGTTGTCAGAAGA
AACTATCTCCACTACATCAAGAAATACAACCGTTTTGAAAAGAGACACTCCAACATCCCA
GCCCACGTTTCACCAGCTTTCAACGTAAAGGAAGGTGACTCTGTTACCATTGGCCAATGT
AGACCATTATCCAAAACTGTCAGATTCAACGTCATCAAACACGATATCTCTGCTGCCTCA
AAGAAACAATTCAAAGCTTTCTAAATTTGAAAAATAACTAAATAAAAAAAGTTTTGGTTT
TATATTAAAACAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

---RYYKNIGLGYRTPKDAIEGTYIDKKCPFPSDVSIRGAILRGTVISTKMGRTLVVRRN
YLHYIKKYNRFEKRHSNIPAHVSPAFNVKEGDSVTIGQCRPLSKTVRFNVIKHDISAASK
KQFKAF*i*kitk*kkfwfyiktnkkkkkkkkkkkkkkkkkkk

Frame A:
---qilqkyrswlqnpkgchrrylhr*emsiplrrfnpwcyppwyrhlnqngknpccqkk
lsplhqeiqpf*ketlqhpsprftsfqrkgr*lcyhwpm*tiiqncqiqrhqtrylcclk
etiqsflnlknn*ikkvlvly*nkqkkkkkkkkkkkkkkkkkk


Frame B:
---RYYKNIGLGYRTPKDAIEGTYIDKKCPFPSDVSIRGAILRGTVISTKMGRTLVVRRN
YLHYIKKYNRFEKRHSNIPAHVSPAFNVKEGDSVTIGQCRPLSKTVRFNVIKHDISAASK
KQFKAF*i*kitk*kkfwfyiktnkkkkkkkkkkkkkkkkkkk


Frame C:
---ditkisvlvtepqrmpskvptsirnvhspqtfqsvvlssvvpssqpkweepllseet
isttsrnttvlkrdtptsqptfhqlst*rkvtllplanvdhypklsdstssntisllpqr
nnsklskfek*lnkksfgfilkqtkkkkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BN02 (FC-BN02Q) /CSM/FC/FC-BN/FC-BN02Q.Seq.d/                      801   0.0
FC-AO24 (FC-AO24Q) /CSM/FC/FC-AO/FC-AO24Q.Seq.d/                      767   0.0
FC-AM14 (FC-AM14Q) /CSM/FC/FC-AM/FC-AM14Q.Seq.d/                      767   0.0
FC-041 (FC-041Q) /CSM/CG/CG-FC/FC-041Q.Seq.d/                         767   0.0
VSE738 (VSE738Q) /CSM/VS/VSE7-B/VSE738Q.Seq.d/                        759   0.0
FC-AB23 (FC-AB23Q) /CSM/FC/FC-AB/FC-AB23Q.Seq.d/                      759   0.0
VSH717 (VSH717Q) /CSM/VS/VSH7-A/VSH717Q.Seq.d/                        755   0.0
FC-BI23 (FC-BI23Q) /CSM/FC/FC-BI/FC-BI23Q.Seq.d/                      753   0.0
FC-BJ19 (FC-BJ19Q) /CSM/FC/FC-BJ/FC-BJ19Q.Seq.d/                      735   0.0
FC-BH05 (FC-BH05Q) /CSM/FC/FC-BH/FC-BH05Q.Seq.d/                      735   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L17004|L17004.1 Saccharomyces cerevisiae ribosomal protein S18 (RPS18B) gene, complete cds.    58  1e-13  3
Z35917|Z35917.1 S.cerevisiae chromosome II reading frame ORF YBR048w.    58  1e-13  3
Z35918|Z35918.1 S.cerevisiae chromosome II reading frame ORF YBR049c.    58  6e-13  3
AZ924824|AZ924824.1 4906.id55i03.s1 Saccharomyces mikatae IFO 1815 Saccharomyces mikatae genomic clone 4906.id55i03.s1, DNA sequence.    52  7e-12  3
Z46260|Z46260.1 S.cerevisiae alphaS288C DNA of remnant delta gene for ribosomal protein S18.    58  2e-11  3
BM500132|BM500132.1 PAC000000000241 Pioneer AF-1 array Zea mays cDNA, mRNA sequence.    54  4e-10  2
AQ492019|AQ492019.1 V100D10 mTn-3xHA/lacZ Insertion Library Saccharomyces cerevisiae genomic 5', genomic survey sequence.    52  4e-10  3
CD843103|CD843103.1 RFO2.130I01F011003 RFO2 Brassica napus cDNA clone RFO2130I01, mRNA sequence.    54  3e-09  3
Z74321|Z74321.1 S.cerevisiae chromosome IV reading frame ORF YDR025w.    52  3e-09  3
L15408|L15408.1 Yeast ribosomal protein S18 (RPS18A) complete cds; Seryl tRNA transferase (SES1) gene, 3' end.    52  4e-09  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54S90) RecName: Full=40S ribosomal protein S11;                     225   5e-58
AM263438_1(AM263438|pid:none) Chenopodium rubrum mRNA for 40S ri...   184   1e-45
CP000497_141(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...   181   6e-45
D35542(D35542) ribosomal protein S11 - soybean (fragment)  &M310...   181   6e-45
AM920433_621(AM920433|pid:none) Penicillium chrysogenum Wisconsi...   181   1e-44
AP008210_1248(AP008210|pid:none) Oryza sativa (japonica cultivar...   180   2e-44
EU963113_1(EU963113|pid:none) Zea mays clone 257780 40S ribosoma...   179   3e-44
BT071208_1(BT071208|pid:none) Picea sitchensis clone WS02810_F09...   179   3e-44
EU285015_1(EU285015|pid:none) TSA: Elaeis guineensis EgEfMPOB002...   179   4e-44
DQ401082_1(DQ401082|pid:none) Chlamydomonas sp. ICE-L 40S riboso...   179   4e-44

 psg: 0.55  gvh: 0.34  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.03
 nuc: 0.19  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for FC-BN02 is cyt

>FC-BN02Z.Seq
----------TCAGATATTACAAAAATATCGGTCTTGGTTACAGAACCCCAAAGGATGCC
ATCGAAGGTACCTACATCGATAAGAAATGTCCATTCCCCTCAGACGTTTCAATCCGTGGT
GCTATCCTCCGTGGTACCGTCATCTCAACCAAAATGGGAAGAACCCTTGTTGTCAGAAGA
AACTATCTCCACTACATCAAGAAATACAACCGTTTTGAAAAGAGACACTCCAACATCCCA
GCCCACGTTTCACCAGCTTTCAACGTAAAGGAAGGTGACTCTGTTACCATTGGCCAATGT
AGACCATTATCCAAAACTGTCAGATTCAACGTCATCAAACACGATATCTCTGCTGCCTCA
AAGAAACAATTCAAAGCTTTCTAAATTTGAAAAATAACTAAATAAAAAAAGTTTTGGTTT
TATATTAAAACAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA