AFH735
Library AF
(Link to library)
Clone ID AFH735
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16361-1
Original site URL
Representative seq. ID AFH735P
(Link to Original site)
Representative DNA sequence
>AFH735 (AFH735Q) /CSM/AF/AFH7-B/AFH735Q.Seq.d/
ACTGTTGGCCTACTGGATTTCGATACTTGTGATGGTCCAATAGTTTCACCAAAATGTACC
TACCTTCGTAGACGTAAACCACCCATTCCACATAATAAAGCAGGTAACATCAATAATGCC
CTCTTTAATGAATCAACTAAAGCCGATTACGAGTTCCTTGGTTTACTTGATGCAGATCAA
CAACCTCATCCAGATTTCCTCAAAAGAGTTTTACCATACTTTTACAGTGATGAAGGTCAA
GATTTGGCTTTTGTTCAAACACCACAATTCTTTAGTAACATTTATCCAGTAGACGATCCA
TTAGGTCATCGTAATATGGAGTTTTATGGTCCAGTAATGGAAGGTCGTTCTGCAAACAAT
GCCTGTCCTTTCGTAGGTACAAACGCTATTTTCAGACGTCAACCACTCTATGATATCGGT
GGTATTATGTATAACTCTGTAACAGAAGATATGTATACTGGTATGAAATTACAAGTTAGT
GGTTACAAATCTTGGTATCACAATGAAGTACTTGTAGTTGGTACCGCTCCAGTAGATCTT
AAAGXXXXXXXXXXTTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCCAA
TCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATA
TGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAG
AAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTT
CATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTC
GTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTG
AAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTA
AACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATT
CAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTG
CTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTT
TCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTG
AAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATTCTTGGTAC
TGGTTTCTTGGTATTACTCTTTGTNATGTCAAAGT
sequence update 2001. 6. 2
Translated Amino Acid sequence
TVGLLDFDTCDGPIVSPKCTYLRRRKPPIPHNKAGNINNALFNESTKADYEFLGLLDADQ
QPHPDFLKRVLPYFYSDEGQDLAFVQTPQFFSNIYPVDDPLGHRNMEFYGPVMEGRSANN
ACPFVGTNAIFRRQPLYDIGGIMYNSVTEDMYTGMKLQVSGYKSWYHNEVLVVGTAPVDL
K---

---LIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWVEA
TDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEV
FRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAV
LRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLFLVLV
SWYYSLXCQS


Translated Amino Acid sequence (All Frames)
Frame A:
TVGLLDFDTCDGPIVSPKCTYLRRRKPPIPHNKAGNINNALFNESTKADYEFLGLLDADQ
QPHPDFLKRVLPYFYSDEGQDLAFVQTPQFFSNIYPVDDPLGHRNMEFYGPVMEGRSANN
ACPFVGTNAIFRRQPLYDIGGIMYNSVTEDMYTGMKLQVSGYKSWYHNEVLVVGTAPVDL
K---

---LIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWVEA
TDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEV
FRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAV
LRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLFLVLV
SWYYSLXCQS

Frame B:
llaywisilvmvq*fhqnvptfvdvnhpfhiikqvtsimpslmnqlkpitsslvylmqin
nliqisskefyhtftvmkvkiwllfkhhnslvtfiq*tih*viviwsfmvq*wkvvlqtm
pvls*vqtlfsdvnhsmisvvlcitl*qkicilv*nyklvvtnlgitmkyl*lvplq*il
k---

---*l*vfglyqsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkpvrvvhhfg*kl
lifgelnklslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*fvkf
svklnwsmkmimlknqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl**vly
ldlivskmicgfwls*lvslslpygiyglsfqwlfvkvknnghmllhtmltilfyswywf
lgitlcxvk

Frame C:
cwptgfryl*wsnsftkmylps*t*tthst**sr*hq*cpl**in*srlrvpwft*crst
tssrfpqksftillq**rsrfgfcsnttil**hlssrrsirss*ygvlwssngrsfckqc
lsfrrykryfqtsttl*yrwyyv*lcnrryvywyeits*wlqilvsq*stcswyrssrs*
---

---nyeyldctnrckrsnhfhsrrydscngvtkshsiyds*sqetl*sr*ewsitlgrsy
*sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketssl*sf
psn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgydecct
*i*lfpk*yvafgcrswflflylmafmvfhsngsssk*ktmaicffipcsqycfilgtgf
lvllfvmsk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFH735 (AFH735Q) /CSM/AF/AFH7-B/AFH735Q.Seq.d/ 2502 0.0
SHC269 (SHC269Q) /CSM/SH/SHC2-C/SHC269Q.Seq.d/ 1463 0.0
AHD208 (AHD208Q) /CSM/AH/AHD2-A/AHD208Q.Seq.d/ 1463 0.0
SHA749 (SHA749Q) /CSM/SH/SHA7-C/SHA749Q.Seq.d/ 1455 0.0
SHK418 (SHK418Q) /CSM/SH/SHK4-A/SHK418Q.Seq.d/ 1449 0.0
AHQ843 (AHQ843Q) /CSM/AH/AHQ8-B/AHQ843Q.Seq.d/ 1449 0.0
AHL711 (AHL711Q) /CSM/AH/AHL7-A/AHL711Q.Seq.d/ 1449 0.0
AHK241 (AHK241Q) /CSM/AH/AHK2-B/AHK241Q.Seq.d/ 1449 0.0
SHL378 (SHL378Q) /CSM/SH/SHL3-D/SHL378Q.Seq.d/ 1447 0.0
SHK186 (SHK186Q) /CSM/SH/SHK1-D/SHK186Q.Seq.d/ 1447 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds. 1402 0.0 2
AC024176|AC024176.6 Homo sapiens chromosome 11 clone RP11-5O22, WORKING DRAFT SEQUENCE, 47 unordered pieces. 46 1.3 1
AP000567|AP000567.2 Homo sapiens genomic DNA, chromosome 21q22.1, clone:B41N19, SOD-AML region. 38 1.7 8
AP006429|AP006429.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT17D07, TM0322. 36 2.0 6
AL772145|AL772145.9 Mouse DNA sequence from clone RP23-212H4 on chromosome 3. 36 2.9 7
Z81491|Z81491.1 Caenorhabditis elegans cosmid D1086. 42 3.7 2
BD099010|BD099010.1 Novel genes cloned in humanneuroblastoma and fragments thereof. 36 5.0 2
BD097433|BD097433.1 Nucleic acid sequences characterized by their enhanced expression in good prognostic human neuroblastoma upon comparison between good prognostic human neuroblastoma and poor prognostic human neuroblastoma. 36 5.0 2
BD083786|BD083786.1 Nucleic acid sequence characterized in that expression is potentiated in human neuroblastoma with good prognosis, in comparion between human neuroblastoma with good prognosis and human neuroblastoma with bad prognosis. 36 5.0 2
BD019072|BD019072.1 Novel gene and novel gene fragment cloned in human neuroblastoma. 36 5.0 2
dna update 2004. 6.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U... 479 e-134
CP000951_2081(CP000951|pid:none) Synechococcus sp. PCC 7002, com... 142 3e-32
EF563999_1(EF563999|pid:none) Phytophthora sojae cellulose synth... 137 8e-31
EF563995_1(EF563995|pid:none) Phytophthora infestans cellulose s... 137 1e-30
CP001037_1366(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 135 2e-30
CP000828_4747(CP000828|pid:none) Acaryochloris marina MBIC11017,... 133 1e-29
EU279853_1(EU279853|pid:none) Porphyra yezoensis isolate PL006a1... 108 5e-22
CP000474_3374(CP000474|pid:none) Arthrobacter aurescens TC1, com... 104 6e-21
CP000092_131(CP000092|pid:none) Ralstonia eutropha JMP134 megapl... 103 2e-20
CU633750_1810(CU633750|pid:none) Cupriavidus taiwanensis str. LM... 102 3e-20
protein update 2009. 4.22
PSORT

psg: 0.75 gvh: 0.35 alm: 0.23 top: 0.43 tms: 0.33 mit: 0.13 mip: 0.00
nuc: 0.07 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

44.0 %: plasma membrane
32.0 %: endoplasmic reticulum
8.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for AFH735 is pla

5' end seq. ID AFH735F
5' end seq.
>AFH735F.Seq
ACTGTTGGCCTACTGGATTTCGATACTTGTGATGGTCCAATAGTTTCACCAAAATGTACC
TACCTTCGTAGACGTAAACCACCCATTCCACATAATAAAGCAGGTAACATCAATAATGCC
CTCTTTAATGAATCAACTAAAGCCGATTACGAGTTCCTTGGTTTACTTGATGCAGATCAA
CAACCTCATCCAGATTTCCTCAAAAGAGTTTTACCATACTTTTACAGTGATGAAGGTCAA
GATTTGGCTTTTGTTCAAACACCACAATTCTTTAGTAACATTTATCCAGTAGACGATCCA
TTAGGTCATCGTAATATGGAGTTTTATGGTCCAGTAATGGAAGGTCGTTCTGCAAACAAT
GCCTGTCCTTTCGTAGGTACAAACGCTATTTTCAGACGTCAACCACTCTATGATATCGGT
GGTATTATGTATAACTCTGTAACAGAAGATATGTATACTGGTATGAAATTACAAGTTAGT
GGTTACAAATCTTGGTATCACAATGAAGTACTTGTAGTTGGTACCGCTCCAGTAGATCTT
AAAG----------
Length of 5' end seq. 544
3' end seq. ID AFH735Z
3' end seq.
>AFH735Z.Seq
----------TTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCCAATCAT
TTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGAT
TCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGC
TACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATC
ATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCA
TAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGT
TTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACA
TAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAG
ACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGT
ACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTC
TTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAA
ACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATTCTTGGTACTGGT
TTCTTGGTATTACTCTTTGTNATGTCAAAGT
Length of 3' end seq. 741
Connected seq. ID AFH735P
Connected seq.
>AFH735P.Seq
ACTGTTGGCCTACTGGATTTCGATACTTGTGATGGTCCAATAGTTTCACCAAAATGTACC
TACCTTCGTAGACGTAAACCACCCATTCCACATAATAAAGCAGGTAACATCAATAATGCC
CTCTTTAATGAATCAACTAAAGCCGATTACGAGTTCCTTGGTTTACTTGATGCAGATCAA
CAACCTCATCCAGATTTCCTCAAAAGAGTTTTACCATACTTTTACAGTGATGAAGGTCAA
GATTTGGCTTTTGTTCAAACACCACAATTCTTTAGTAACATTTATCCAGTAGACGATCCA
TTAGGTCATCGTAATATGGAGTTTTATGGTCCAGTAATGGAAGGTCGTTCTGCAAACAAT
GCCTGTCCTTTCGTAGGTACAAACGCTATTTTCAGACGTCAACCACTCTATGATATCGGT
GGTATTATGTATAACTCTGTAACAGAAGATATGTATACTGGTATGAAATTACAAGTTAGT
GGTTACAAATCTTGGTATCACAATGAAGTACTTGTAGTTGGTACCGCTCCAGTAGATCTT
AAAG----------TTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCCAA
TCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATA
TGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAG
AAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTT
CATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTC
GTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTG
AAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTA
AACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATT
CAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTG
CTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTT
TCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTG
AAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATTCTTGGTAC
TGGTTTCTTGGTATTACTCTTTGTNATGTCAAAGT
Length of connected seq. 1285
Full length Seq ID -
Full length Seq. -
Length of full length seq. -