NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BM17
Library FC
(Link to library)
Clone ID FC-BM17
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15444-1
Original site URL
Representative seq. ID FC-BM17Z
(Link to Original site)
Representative DNA sequence 
>FC-BM17 (FC-BM17Q) /CSM/FC/FC-BM/FC-BM17Q.Seq.d/
XXXXXXXXXXTAGATAAATACAGACCAGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTG
AAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAA
CCAGTCCAACACTTACGTTTCGGTATTGACTCTGTCACCAAATTAATCGAAAAGAAGAAA
GCTAAATTAGTCGTCATTGCCCACGATGTTGACCCAGTTGAACTCGTCTTATACTTACCA
ACCCTCTGCAGACGTATGGATGTCCCATACTGTATCGTCAAATCTAAATCCAGATTAGGT
GAATTAGTTCACATGAGAAACGCTTCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGAC
TCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAACAAATGTTCAACAATAACAGTGAA
CACAGAAAGACCTGGGGTGGTAACACTTTATCTGGTCCAGCTCGTGCTCTCTTAGCCAAA
CGTCAAAAAGATGAAGCCAAAGAAAGTTTAGCCAAATCAAAGATCTAAGCTCTTTAATAG
TTTAGCGAGACTCTCACTCTTTTTTTAAATAATCAAAAAAAAAAAGGTTCTTTAAAAAAA
AAAAATACTAAAAAAAAAATTTTATTCTTTTAAAAAAAAA
sequence update 1998. 4.11
Translated Amino Acid sequence 
---DKYRPEEASVKKARLLKIAEARAATPKGQAAPKAEKPVQHLRFGIDSVTKLIEKKKA
KLVVIAHDVDPVELVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCVALTGVNSADS
NELALLVESAKQMFNNNSEHRKTWGGNTLSGPARALLAKRQKDEAKESLAKSKI*al**f
setltlflnnqkkkgslkkkntkkkilff*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
---r*iqtrrslsqes*iienr*spcchskrsscsks*ktsptltfry*lchqinrkees
*isrhcprc*ps*trliltnplqtygcpilyrqi*iqir*isshekrfmccphwcqlc*l
krtrfis*irqtnvqq*q*tqkdlgw*hfiwssscslsqtskr*sqrkfsqikdlssliv
*rdshsffk*skkkrffkkkky*kknfillkk


Frame B:
---DKYRPEEASVKKARLLKIAEARAATPKGQAAPKAEKPVQHLRFGIDSVTKLIEKKKA
KLVVIAHDVDPVELVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCVALTGVNSADS
NELALLVESAKQMFNNNSEHRKTWGGNTLSGPARALLAKRQKDEAKESLAKSKI*al**f
setltlflnnqkkkgslkkkntkkkilff*kk


Frame C:
---intdqkkpqsrkldy*kslkpvlplqkvkllqklknqsntyvsvltlspn*skrrkl
n*sslptmltqlnssytyqpsadvwmshtvssnlnpd*vn*ft*etlhvlpslvstlltq
tnsly*lnppnkcstitvnterpgvvtlylvqlvls*pnvkkmkpkkv*pnqrsklfnsl
arlslff*iikkkkvl*kkkilkkkfysfkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BM17 (FC-BM17Q) /CSM/FC/FC-BM/FC-BM17Q.Seq.d/                     1088   0.0
FC-BL19 (FC-BL19Q) /CSM/FC/FC-BL/FC-BL19Q.Seq.d/                     1080   0.0
VHC562 (VHC562Q) /CSM/VH/VHC5-C/VHC562Q.Seq.d/                       1072   0.0
FC-BB05 (FC-BB05Q) /CSM/FC/FC-BB/FC-BB05Q.Seq.d/                     1072   0.0
FC-BB03 (FC-BB03Q) /CSM/FC/FC-BB/FC-BB03Q.Seq.d/                     1072   0.0
FC-AK02 (FC-AK02Q) /CSM/FC/FC-AK/FC-AK02Q.Seq.d/                     1072   0.0
FC-187 (FC-187Q) /CSM/CG/CG-FC/FC-187Q.Seq.d/                        1072   0.0
VSF364 (VSF364Q) /CSM/VS/VSF3-C/VSF364Q.Seq.d/                       1063   0.0
FC-AQ10 (FC-AQ10Q) /CSM/FC/FC-AQ/FC-AQ10Q.Seq.d/                     1063   0.0
VSJ540 (VSJ540Q) /CSM/VS/VSJ5-B/VSJ540Q.Seq.d/                       1059   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   682  0.0  2
BQ476680|BQ476680.1 curculio4h01.g Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 3', mRNA sequence.    54  2e-08  3
BQ476431|BQ476431.1 curculio4h01.b Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 5', mRNA sequence.    54  3e-06  2
BQ623728|BQ623728.1 USDA-FP_00819 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00819 5', mRNA sequence.    56  9e-06  2
CA755632| (Y15171) ribosomal protein L7a [Takifugu rubripes], mRNA sequence.    60  3e-05  1
CA845440|CA845440.1 hab99h11.y1 Fugu hgmpD adult gut Takifugu rubripes cDNA clone IMAGE:6356972 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  4e-04  2
CA330639|CA330639.1 hab08d06.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362938 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  6e-04  2
CA846589|CA846589.1 hab83c10.y1 Fugu hgmpC adult gill Takifugu rubripes cDNA clone IMAGE:6355194 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  6e-04  2
CA330747|CA330747.1 haa65h09.y2 Fugu hgmpF adult brain Takifugu rubripes cDNA clone 6358888 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  6e-04  2
CA330317|CA330317.1 hab04g11.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362708 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  6e-04  2
dna update 2003. 7.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a;                     331   1e-89
AY769275_1(AY769275|pid:none) Bombyx mori ribosomal protein L7A ...   163   3e-39
BC122243_1(BC122243|pid:none) Danio rerio zgc:153325, mRNA (cDNA...   163   4e-39
EU934303_1(EU934303|pid:none) TSA: Anopheles darlingi AD-165 60S...   160   2e-38
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso...   160   4e-38
EU259814_1(EU259814|pid:none) Spodoptera exigua ribosomal protei...   158   1e-37
(Q2TBQ5) RecName: Full=60S ribosomal protein L7a;  &BC109810_1(B...   157   2e-37
(O76732) RecName: Full=60S ribosomal protein L7a;                     157   2e-37
BC065176_1(BC065176|pid:none) Mus musculus ribosomal protein L7a...   157   2e-37
BC052339_1(BC052339|pid:none) Mus musculus ribosomal protein L7a...   157   2e-37
protein update 2009. 4.14
PSORT 

 psg: 0.57  gvh: 0.43  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 32.0 %: mitochondrial
	  8.0 %: nuclear

>> prediction for FC-BM17 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-BM17Z
3' end seq. 
>FC-BM17Z.Seq
----------TAGATAAATACAGACCAGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTG
AAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAA
CCAGTCCAACACTTACGTTTCGGTATTGACTCTGTCACCAAATTAATCGAAAAGAAGAAA
GCTAAATTAGTCGTCATTGCCCACGATGTTGACCCAGTTGAACTCGTCTTATACTTACCA
ACCCTCTGCAGACGTATGGATGTCCCATACTGTATCGTCAAATCTAAATCCAGATTAGGT
GAATTAGTTCACATGAGAAACGCTTCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGAC
TCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAACAAATGTTCAACAATAACAGTGAA
CACAGAAAGACCTGGGGTGGTAACACTTTATCTGGTCCAGCTCGTGCTCTCTTAGCCAAA
CGTCAAAAAGATGAAGCCAAAGAAAGTTTAGCCAAATCAAAGATCTAAGCTCTTTAATAG
TTTAGCGAGACTCTCACTCTTTTTTTAAATAATCAAAAAAAAAAAGGTTCTTTAAAAAAA
AAAAATACTAAAAAAAAAATTTTATTCTTTTAAAAAAAAA
Length of 3' end seq. 630
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -