>FC-BM14 (FC-BM14Q) /CSM/FC/FC-BM/FC-BM14Q.Seq.d/
XXXXXXXXXXGAATTCAATTTTAGCACAATATCCAAAATTAAAAGTTTTAGAAGAGGATG
TATTCCCAAAAAAAGTTCCAATTGTTCAAGTTAAATGTCCAAATCATATAAATTTAGTTT
TAATTAACAATGAAGTTTTATTTTTTAATGAAAGAGAAGGACCATATTATCCAACTTTAA
GATTCTTCCATAAATATCCAAATATTTTCCCACATGTTCAAGTTGATAAGGGTGCAATTA
AATTCGTATTCCAAGGCGCAAATATTATGTGTAGAGGTTTAACATCCCCAGGTGCAAAGA
TGGAAGTTGATTTACCAGTTGATGCTATGTTGCTATTATGGCTGAAGGTAAAGATCATGC
TACATAAAATTGGTGTAATGAAAAAATACCAATGATATTCGTACAATCAATAATGACATA
GGTATCAATAATATTCATAATTTAGGTGATAGTTTATTTATGTCACCAAAATTACTTAAA
CTTTAATAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---NSILAQYPKLKVLEEDVFPKKVPIVQVKCPNHINLVLINNEVLFFNEREGPYYPTLR
FFHKYPNIFPHVQVDKGAIKFVFQGANIMCRGLTSPGAKMEVDLPVDAMLLLWLKVKIML
HKIGVMKKYQ*ysynq**hryq*ys*fr**fiyvtkit*tlikkkikkkkkkkkkk

Frame A:
---NSILAQYPKLKVLEEDVFPKKVPIVQVKCPNHINLVLINNEVLFFNEREGPYYPTLR
FFHKYPNIFPHVQVDKGAIKFVFQGANIMCRGLTSPGAKMEVDLPVDAMLLLWLKVKIML
HKIGVMKKYQ*ysynq**hryq*ys*fr**fiyvtkit*tlikkkikkkkkkkkkk


Frame B:
---iqf*hniqn*kf*krmysqkkfqlfklnvqii*i*f*ltmkfyflmkekdhiiql*d
ssiniqifshmfklirvqlnsyskaqilcvev*hpqvqrwkliyqlmlccyyg*r*rscy
iklv**kntndirtinndiginnihnlgdslfmspkllkl**kkk*kkkkkkkkkk


Frame C:
---fnfstiskiksfrrgcipkkssncss*msksykfsfn*q*sfif**krrtilsnfki
lp*iskyfptcss**gcn*iriprrkyyv*rfniprckdgs*fts*cyvaimaegkdhat
*nwcnekipmifvqsimt*vsiifii*vivylchqnylnfnkkknkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BM14 (FC-BM14Q) /CSM/FC/FC-BM/FC-BM14Q.Seq.d/                      904   0.0
SSC114 (SSC114Q) /CSM/SS/SSC1-A/SSC114Q.Seq.d/                        680   0.0
SSL108 (SSL108Q) /CSM/SS/SSL1-A/SSL108Q.Seq.d/                        658   0.0
SSI302 (SSI302Q) /CSM/SS/SSI3-A/SSI302Q.Seq.d/                        270   2e-71
CHP329 (CHP329Q) /CSM/CH/CHP3-B/CHP329Q.Seq.d/                         40   0.033
VSJ686 (VSJ686Q) /CSM/VS/VSJ6-D/VSJ686Q.Seq.d/                         36   0.52
VSG542 (VSG542Q) /CSM/VS/VSG5-B/VSG542Q.Seq.d/                         36   0.52
VSD281 (VSD281Q) /CSM/VS/VSD2-D/VSD281Q.Seq.d/                         36   0.52
VSA514 (VSA514Q) /CSM/VS/VSA5-A/VSA514Q.Seq.d/                         36   0.52
VFO795 (VFO795Q) /CSM/VF/VFO7-D/VFO795Q.Seq.d/                         36   0.52

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence.   232  e-175  6
BQ508596|BQ508596.2 EST616011 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGX23 3' end, mRNA sequence.    36  0.002  3
BM112525|BM112525.1 EST560061 potato roots Solanum tuberosum cDNA clone cPRO14H17 5' end, mRNA sequence.    36  0.002  3
BG599968|BG599968.1 EST504863 cSTS Solanum tuberosum cDNA clone cSTS26J12 5' sequence, mRNA sequence.    36  0.002  3
BQ508595|BQ508595.2 EST616010 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGX23 5' end, mRNA sequence.    36  0.002  3
BI513561|BI513561.1 BB160013A10B04 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160013A10B04 5', mRNA sequence.    38  0.005  3
BM162839|BM162839.1 EST565362 PyBS Plasmodium yoelii yoelii cDNA clone PYCKX60 5' end, mRNA sequence.    40  0.006  2
BI508431|BI508431.1 BB170014B10A01 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170014B10A01 5', mRNA sequence.    38  0.018  3
BE692697|BE692697.1 uw44d06.y1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone IMAGE:3464843 5' similar to WP:C11D2.4 CE16845 ;, mRNA sequence.    50  0.027  1
BY761700|BY761700.1 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430001L06, 3' end partial sequence.    50  0.027  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86KL4) RecName: Full=Malignant T cell amplified sequence 1 hom...   214   1e-54
EF082119_1(EF082119|pid:none) Picea sitchensis clone WS02812_C11...   138   9e-32
AY128356_1(AY128356|pid:none) Arabidopsis thaliana unknown prote...   132   7e-30
(Q9DB27) RecName: Full=Malignant T cell amplified sequence 1;   ...   131   9e-30
(Q4G009) RecName: Full=Malignant T cell amplified sequence 1;   ...   131   9e-30
EF145257_1(EF145257|pid:none) Populus trichocarpa clone WS01122_...   131   1e-29
EF145517_1(EF145517|pid:none) Populus trichocarpa clone WS01125_...   131   1e-29
BC095461_1(BC095461|pid:none) Homo sapiens malignant T cell ampl...   130   1e-29
EF146054_1(EF146054|pid:none) Populus trichocarpa clone WS0115_D...   130   3e-29
EU284124_1(EU284124|pid:none) Cucumis sativus pseudouridine synt...   130   3e-29

 psg: 0.61  gvh: 0.22  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for FC-BM14 is cyt

>FC-BM14Z.Seq
----------GAATTCAATTTTAGCACAATATCCAAAATTAAAAGTTTTAGAAGAGGATG
TATTCCCAAAAAAAGTTCCAATTGTTCAAGTTAAATGTCCAAATCATATAAATTTAGTTT
TAATTAACAATGAAGTTTTATTTTTTAATGAAAGAGAAGGACCATATTATCCAACTTTAA
GATTCTTCCATAAATATCCAAATATTTTCCCACATGTTCAAGTTGATAAGGGTGCAATTA
AATTCGTATTCCAAGGCGCAAATATTATGTGTAGAGGTTTAACATCCCCAGGTGCAAAGA
TGGAAGTTGATTTACCAGTTGATGCTATGTTGCTATTATGGCTGAAGGTAAAGATCATGC
TACATAAAATTGGTGTAATGAAAAAATACCAATGATATTCGTACAATCAATAATGACATA
GGTATCAATAATATTCATAATTTAGGTGATAGTTTATTTATGTCACCAAAATTACTTAAA
CTTTAATAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA