>FC-BM04 (FC-BM04Q) /CSM/FC/FC-BM/FC-BM04Q.Seq.d/
ACAAATCTGGGATACCGCAGGACAAGAAAGATTTAGAACTATTACATCATCATACTATCG
TGGTGCTCAAGGTATTATTCTTGTTTATGATTGCACTGATCAAGATTCATTTACAAATGT
TAAACAATGGATGGGTGAAATCGATAGATATGCTTGCGAAAATGTTAATAAACTTTTAGT
TGGTAACAAAACTGATTTAGTAAACGAAAAAGTTGTCGATTCAAATCAAGCTAAATCATT
TGCAGAAAGTTATGGTATTCCATTCATTGAAACTAGTGCTAAGAATGCAACAAATGTTGA
AGAATGTTTTATTTCAATGGCAAGAGATATTAAAAATAGACTTGCAGATATTCAAAAACC
CCAAAACCAGACGAAGTTGATATCAAATCAAAAAATAAAACAAAGAGTAGAGGTAAAAAA
TCCTTTTGTTAAATCAAATAACAATAAAAAAAAAAAAAATTAAAAAAAAAAAAAAATAAA
AAAAAAATTAAAAAATAAAAAAAA

QIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLV
GNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLADIQKP
QNQTKLISNQKIKQRVEVKNPFVKSNNNKKKKN*kkkkikkklknkk

Frame A:
tnlgyrrtrki*nyyiiilswcsryyscl*lh*srfiykc*tmdg*nr*iclrkc**tfs
w*qn*fskrkscrfkss*iicrklwysih*n*c*ecnkc*rmfyfngkry*k*tcryskt
pkpdevdiksknktksrgkksfc*ik*q*kkkklkkkknkkkikk*kk


Frame B:
QIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLV
GNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLADIQKP
QNQTKLISNQKIKQRVEVKNPFVKSNNNKKKKN*kkkkikkklknkk


Frame C:
ksgipqdkkdlellhhhtivvlkvlflfmialikihlqmlnngwvksidmlakmlinf*l
vtkli**tkklsiqiklnhlqkvmvfhslklvlrmqqmlknvlfqwqeilkidlqifknp
ktrrs*yqikk*nke*r*killlnqitikkkkikkkkk*kkn*kikk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BM04 (FC-BM04Q) /CSM/FC/FC-BM/FC-BM04Q.Seq.d/                      761   0.0
SSA695 (SSA695Q) /CSM/SS/SSA6-D/SSA695Q.Seq.d/                        739   0.0
SSB187 (SSB187Q) /CSM/SS/SSB1-D/SSB187Q.Seq.d/                        724   0.0
VSD323 (VSD323Q) /CSM/VS/VSD3-A/VSD323Q.Seq.d/                        202   4e-51
VSJ747 (VSJ747Q) /CSM/VS/VSJ7-B/VSJ747Q.Seq.d/                        137   2e-31
AHD475 (AHD475Q) /CSM/AH/AHD4-D/AHD475Q.Seq.d/                        137   2e-31
SLC626 (SLC626Q) /CSM/SL/SLC6-B/SLC626Q.Seq.d/                        129   4e-29
VFC510 (VFC510Q) /CSM/VF/VFC5-A/VFC510Q.Seq.d/                        107   2e-22
SSM886 (SSM886Q) /CSM/SS/SSM8-D/SSM886Q.Seq.d/                        107   2e-22
SSM603 (SSM603Q) /CSM/SS/SSM6-A/SSM603Q.Seq.d/                        107   2e-22

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L21009|L21009.1 Dictyostelium discoideum Rab1A mRNA, complete cds.   117   7e-35  2
BG661470|BG661470.1 kx02c10.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RAB1_LYMST Q05974 RAS-RELATED PROTEIN RAB-1A. ;, mRNA sequence.    62   1e-21  3
L21010|L21010.1 Dictyostelium discoideum Rab1B mRNA, 3' end of cds.    68   5e-16  3
BE023346|BE023346.1 sm70g01.y1 Gm-c1028 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1028-9289 5' similar to TR:Q40203 Q40203 RAB1C. ;, mRNA sequence.    50   6e-14  3
AW397121|AW397121.1 sg67b08.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-1456 5' similar to TR:Q40203 Q40203 RAB1C. ;, mRNA sequence.    50   8e-14  3
BG047357|BG047357.1 saa83d10.y1 Gm-c1063 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1063-955 5' similar to TR:Q40203 Q40203 RAB1C. [1] ;, mRNA sequence.    50   9e-14  3
BM885070|BM885070.1 sal94e07.y1 Gm-c1063 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1063-3685 5' similar to TR:Q40203 Q40203 RAB1C. [1] ;, mRNA sequence.    50   1e-13  3
BM092508|BM092508.1 sah14f08.y3 Gm-c1086 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1086-1431 5' similar to TR:Q40203 Q40203 RAB1C. [1] ;, mRNA sequence.    50   1e-13  3
BE331049|BE331049.1 so93e09.y1 Gm-c1041 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1041-929 5' similar to TR:Q40203 Q40203 RAB1C. ;, mRNA sequence.    50   1e-13  3
BE657372|BE657372.1 GM700001B20A10 Gm-r1070 Glycine max cDNA clone Gm-r1070-44 3', mRNA sequence.    50   2e-13  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297_3082(AE014297|pid:none) Drosophila melanogaster chromos...   186   3e-46
AF013572_1(AF013572|pid:none) Bombyx mori small GTP-binding prot...   186   4e-46
GN106077_1(GN106077|pid:none) Sequence 10858 from Patent WO20090...   184   1e-45
D12548_1(D12548|pid:none) Pisum sativum mRNA for GTP-binding pro...   184   1e-45
(Q39571) RecName: Full=GTP-binding protein YPTC1;  &DQ222936_1(D...   183   2e-45
BT051367_1(BT051367|pid:none) Medicago truncatula clone MTYF1_F2...   183   2e-45
DQ222937_1(DQ222937|pid:none) Chlamydomonas incerta YptC1 (yptC1...   183   2e-45
BT070553_1(BT070553|pid:none) Picea sitchensis clone WS02735_N04...   183   2e-45
Z73932_1(Z73932|pid:none) L.japonicus mRNA for small GTP-binding...   182   3e-45
EF103367_1(EF103367|pid:none) Haliotis discus discus Ras-related...   182   4e-45

 psg: 0.75  gvh: 0.44  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for FC-BM04 is nuc

>FC-BM04E.Seq
ACAAATCTGGGATACCGCAGGACAAGAAAGATTTAGAACTATTACATCATCATACTATCG
TGGTGCTCAAGGTATTATTCTTGTTTATGATTGCACTGATCAAGATTCATTTACAAATGT
TAAACAATGGATGGGTGAAATCGATAGATATGCTTGCGAAAATGTTAATAAACTTTTAGT
TGGTAACAAAACTGATTTAGTAAACGAAAAAGTTGTCGATTCAAATCAAGCTAAATCATT
TGCAGAAAGTTATGGTATTCCATTCATTGAAACTAGTGCTAAGAATGCAACAAATGTTGA
AGAATGTTTTATTTCAATGGCAAGAGATATTAAAAATAGACTTGCAGATATTCAAAAACC
CCAAAACCAGACGAAGTTGATATCAAATCAAAAAATAAAACAAAGAGTAGAGGTAAAAAA
TCCTTTTGTTAAATCAAATAACAATAAAAAAAAAAAAAATTAAAAAAAAAAAAAAATAAA
AAAAAAATTAAAAAATAAAAAAAA