FC-BL19
Library FC
(Link to library)
Clone ID FC-BL19
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15444-1
Original site URL
Representative seq. ID FC-BL19Z
(Link to Original site)
Representative DNA sequence
>FC-BL19 (FC-BL19Q) /CSM/FC/FC-BL/FC-BL19Q.Seq.d/
XXXXXXXXXXATTCACCCGTGTCTTTGACAAAAACACCGCTGTCCATTTATTCAAATTAT
TAGATAAATACAGACCAGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAAATCGCTG
AAGCCCGTGCTGCCACTCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAAC
ACTTACGTTTCGGTATTGACTCTGTCACCAAATTAATCGAAAAGAAGAAAGCTAAATTAG
TCGTCATTGCCCACGATGTTGACCCAGTTGAACTCGTCTTATACTTACCAACCCTCTGCA
GACGTATGGATGTCCCATACTGTATCGTCAAATCTAAATCCAGATTAGGTGAATTAGTTC
ACATGAGAAACGCTTCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGACTCAAACGAAC
TCGCTTTATTAGTTGAATCCGCCAAACAAATGTTCAACAATAACAGTGAACACAGAAAGA
CCTGGGGTGGTAACACTTTATCTGGTCCAGCTCGTGCTCTCTTAGCCAAACGTCAAAAAG
CTGAAGCCAAAGAAAGTTTAGCCAAATCAAAGATCTAAGCTCTTTAATAGTTTAGCGAGA
CTCTCACTCTTTTTTTAAATAATCAAATAAAATAAAGGTTCTTTAAAAAAAAAAAATACT
AAAAAAAAAATTTTATTCTTTTAAAAAAAAA
sequence update 1998. 4.10
Translated Amino Acid sequence
---FTRVFDKNTAVHLFKLLDKYRPEEASVKKARLLKIAEARAATPKGQAAPKAEKPVQH
LRFGIDSVTKLIEKKKAKLVVIAHDVDPVELVLYLPTLCRRMDVPYCIVKSKSRLGELVH
MRNASCVALTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGNTLSGPARALLAKRQKA
EAKESLAKSKI*al**fsetltlflnnqik*rffkkkky*kknfillkk


Translated Amino Acid sequence (All Frames)
Frame A:
---FTRVFDKNTAVHLFKLLDKYRPEEASVKKARLLKIAEARAATPKGQAAPKAEKPVQH
LRFGIDSVTKLIEKKKAKLVVIAHDVDPVELVLYLPTLCRRMDVPYCIVKSKSRLGELVH
MRNASCVALTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGNTLSGPARALLAKRQKA
EAKESLAKSKI*al**fsetltlflnnqik*rffkkkky*kknfillkk


Frame B:
---spvsltktplsiysny*intdqkkpqsrkldy*kslkpvlplqkvkllqklknqsnt
yvsvltlspn*skrrkln*sslptmltqlnssytyqpsadvwmshtvssnlnpd*vn*ft
*etlhvlpslvstlltqtnsly*lnppnkcstitvnterpgvvtlylvqlvls*pnvkkl
kpkkv*pnqrsklfnslarlslff*iik*nkgslkkkntkkkilff*kk


Frame C:
---hpcl*qkhrcpfiqiir*iqtrrslsqes*iienr*spcchskrsscsks*ktsptl
tfry*lchqinrkees*isrhcprc*ps*trliltnplqtygcpilyrqi*iqir*issh
ekrfmccphwcqlc*lkrtrfis*irqtnvqq*q*tqkdlgw*hfiwssscslsqtsks*
sqrkfsqikdlssliv*rdshsffk*snkikvl*kkkilkkkfysfkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-BL19 (FC-BL19Q) /CSM/FC/FC-BL/FC-BL19Q.Seq.d/ 1215 0.0
FC-AK02 (FC-AK02Q) /CSM/FC/FC-AK/FC-AK02Q.Seq.d/ 1207 0.0
FC-187 (FC-187Q) /CSM/CG/CG-FC/FC-187Q.Seq.d/ 1207 0.0
FC-BQ11 (FC-BQ11Q) /CSM/FC/FC-BQ/FC-BQ11Q.Seq.d/ 1193 0.0
VHC562 (VHC562Q) /CSM/VH/VHC5-C/VHC562Q.Seq.d/ 1191 0.0
VSJ540 (VSJ540Q) /CSM/VS/VSJ5-B/VSJ540Q.Seq.d/ 1170 0.0
VSF364 (VSF364Q) /CSM/VS/VSF3-C/VSF364Q.Seq.d/ 1170 0.0
FC-IC1585 (FC-IC1585Q) /CSM/FC-IC/FC-IC1585Q.Seq.d/ 1156 0.0
FC-BR03 (FC-BR03Q) /CSM/FC/FC-BR/FC-BR03Q.Seq.d/ 1154 0.0
FC-IC1346 (FC-IC1346Q) /CSM/FC-IC/FC-IC1346Q.Seq.d/ 1148 0.0

own update 2002.10. 7
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence. 660 0.0 3
BQ476680|BQ476680.1 curculio4h01.g Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 3', mRNA sequence. 54 7e-09 3
BQ476431|BQ476431.1 curculio4h01.b Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 5', mRNA sequence. 54 8e-07 2
BQ623728|BQ623728.1 USDA-FP_00819 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00819 5', mRNA sequence. 56 1e-05 2
CA755632| (Y15171) ribosomal protein L7a [Takifugu rubripes], mRNA sequence. 60 4e-05 1
CA845440|CA845440.1 hab99h11.y1 Fugu hgmpD adult gut Takifugu rubripes cDNA clone IMAGE:6356972 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence. 46 5e-04 2
CA330639|CA330639.1 hab08d06.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362938 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence. 46 7e-04 2
CA846589|CA846589.1 hab83c10.y1 Fugu hgmpC adult gill Takifugu rubripes cDNA clone IMAGE:6355194 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence. 46 7e-04 2
CA330747|CA330747.1 haa65h09.y2 Fugu hgmpF adult brain Takifugu rubripes cDNA clone 6358888 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence. 46 7e-04 2
CA330317|CA330317.1 hab04g11.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362708 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence. 46 7e-04 2
dna update 2003. 7.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a; 344 1e-93
AY769275_1(AY769275|pid:none) Bombyx mori ribosomal protein L7A ... 176 6e-43
BC122243_1(BC122243|pid:none) Danio rerio zgc:153325, mRNA (cDNA... 173 5e-42
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso... 172 6e-42
EU259814_1(EU259814|pid:none) Spodoptera exigua ribosomal protei... 171 2e-41
EU934303_1(EU934303|pid:none) TSA: Anopheles darlingi AD-165 60S... 170 3e-41
(P35685) RecName: Full=60S ribosomal protein L7a; &AK061725_1(A... 166 4e-40
EF576102_1(EF576102|pid:none) Oryza sativa (indica cultivar-grou... 166 4e-40
BC076693_1(BC076693|pid:none) Xenopus tropicalis hypothetical pr... 166 6e-40
BC118908_1(BC118908|pid:none) Xenopus tropicalis hypothetical pr... 166 6e-40
protein update 2009. 4.14
PSORT

psg: 0.71 gvh: 0.43 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: cytoplasmic
24.0 %: mitochondrial

>> prediction for FC-BL19 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-BL19Z
3' end seq.
>FC-BL19Z.Seq
----------ATTCACCCGTGTCTTTGACAAAAACACCGCTGTCCATTTATTCAAATTAT
TAGATAAATACAGACCAGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAAATCGCTG
AAGCCCGTGCTGCCACTCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAAC
ACTTACGTTTCGGTATTGACTCTGTCACCAAATTAATCGAAAAGAAGAAAGCTAAATTAG
TCGTCATTGCCCACGATGTTGACCCAGTTGAACTCGTCTTATACTTACCAACCCTCTGCA
GACGTATGGATGTCCCATACTGTATCGTCAAATCTAAATCCAGATTAGGTGAATTAGTTC
ACATGAGAAACGCTTCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGACTCAAACGAAC
TCGCTTTATTAGTTGAATCCGCCAAACAAATGTTCAACAATAACAGTGAACACAGAAAGA
CCTGGGGTGGTAACACTTTATCTGGTCCAGCTCGTGCTCTCTTAGCCAAACGTCAAAAAG
CTGAAGCCAAAGAAAGTTTAGCCAAATCAAAGATCTAAGCTCTTTAATAGTTTAGCGAGA
CTCTCACTCTTTTTTTAAATAATCAAATAAAATAAAGGTTCTTTAAAAAAAAAAAATACT
AAAAAAAAAATTTTATTCTTTTAAAAAAAAA
Length of 3' end seq. 681
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -