FC-BL06
Library FC
(Link to library)
Clone ID FC-BL06
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15205-1
Original site URL
Representative seq. ID FC-BL06E
(Link to Original site)
Representative DNA sequence
>FC-BL06 (FC-BL06Q) /CSM/FC/FC-BL/FC-BL06Q.Seq.d/
AATTTAAAAAATGAATCCAAATTATGAACCAATAATTAAAAAATGTCAAACATTTTTAGA
TGCATTATTTAATAGAAATCAAGATACAGATACTTTTGCAAAACCAACTAGAGCACAAAT
AATTAAATCTGCAAAAACATTATCTCATGAAATTACAAAAATATCATTATTATTAGCAGA
TTTAAGAGCAAAAACAGAATATTTTTCATCAATTGAAGAAACATTAGATAATATATTTTC
AATCTACCAAGGTTTATCAGCATATTCAGGAGCGTCATTATTTAGAATCATTCAAATTTA
TTTTAGAAAATTAATTAAATCAACACAAGATGTATTTATTGCATATCAAAATAATGAACA
ATCATTAGGTGATGATGAAGAGAATACAATCTCAAAGCAAATTACAGGTTTAGCATGGAA
ATGTTGTGAGGAACTTGAGAAAGTACCAATTAAAAATTCAAATTCAATCATCTCTAGAGG
TGAAGAGATTTCATCATTGATTCAAGATGCATTAGAGGAGGTTAAAGAATTTCAAAGTAA
ATTAAAGAATCTTGAAAAACAATTTGGTCAAGTCTCTTCAGAGAAACATCAAGTCTCAAA
AGATGGTACTGTCATAGTCGATGGCGAATCAACCACCGATAAAGCTAGTAACGATAAGAA
AAGTGATGATGTAAATGGTGAAATTTGAAAAAGAGGATGAGGACCAAGATCAAGATGAAG
ATGAAGATTACGATGCTGCAGATGATCTTGAACTTTTAAATAATTTAACAAAACAAGATA
TTGAATTGGTAGATAAAATAGTTTCAGTCATTGAACGTTCGACTAAAATCTCTCAATTAT
GGGTTGAAATGTTAAAATCAATTAATAAACCATCCGATGAAGATACTGATTTCACAAGTG
AACAAATTCAAATCTCTGAATCTGTAATTCATCAAATTAATGAACTTTCAAAAAATGTTG
ATGATATTGCAAGTGCTATCTATCCATTACCAAATATTACTTATTGTGAAGCTCAATTAT
CATTATTAGATATTTCAATTAAAGATATTATTGATAAAATTAATTCAAATTTTAAACTTT
TTAATTTTAATTCTAAATTTGAAGAAAAATTAAAATCAATTTAAATAAAAAAGAATATAT
ATAAATAAAAACAAAAACAAAAAATATTTAATTATTATTTAAAAAAAAAAAAAA
sequence update 1999. 4.20
Translated Amino Acid sequence
i*KMNPNYEPIIKKCQTFLDALFNRNQDTDTFAKPTRAQIIKSAKTLSHEITKISLLLAD
LRAKTEYFSSIEETLDNIFSIYQGLSAYSGASLFRIIQIYFRKLIKSTQDVFIAYQNNEQ
SLGDDEENTISKQITGLAWKCCEELEKVPIKNSNSIISRGEEISSLIQDALEEVKEFQSK
LKNLEKQFGQVSSEKHQVSKDGTVIVDGESTTDKASNDKKSDDVNGEI*krg*gprsr*r
*rlrccr*s*tfk*fnktry*igr*nsfsh*tfd*nlsimg*nvkin**tir*ry*fhk*
tnsnl*icnssn**tfkkc**yckcylsitkyyll*ssiiiiryfn*ryy**n*fkf*tf
*f*f*i*rkikinlnkkeyi*iktktkni*llfkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
nlkneskl*tnn*kmsnifrcii**ksryryfcktn*stnn*ickniis*nykniiiisr
fksknriffin*rnir*yifnlprfisifrsvii*nhsnlf*kin*intrciycisk**t
iir***reynlkanyrfsmeml*gt*estn*kfkfnhl*r*rdfiidsrcirgg*risk*
ikes*ktiwsslfretsslkrwychsrwrinhr*s**r*ek**ckw*nlkkrmrtkikmk
mkitmlqmilnf*ii*qnkilnw*ik*fqslnvrlkslnyglkc*nqlinhpmkilisqv
nkfkslnl*fiklmnfqkmlmilqvlsihyqillivklnyhy*ifqlkillikliqilnf
lililnlkkn*nqfk*kriyinknknkkyliii*kkkk


Frame B:
i*KMNPNYEPIIKKCQTFLDALFNRNQDTDTFAKPTRAQIIKSAKTLSHEITKISLLLAD
LRAKTEYFSSIEETLDNIFSIYQGLSAYSGASLFRIIQIYFRKLIKSTQDVFIAYQNNEQ
SLGDDEENTISKQITGLAWKCCEELEKVPIKNSNSIISRGEEISSLIQDALEEVKEFQSK
LKNLEKQFGQVSSEKHQVSKDGTVIVDGESTTDKASNDKKSDDVNGEI*krg*gprsr*r
*rlrccr*s*tfk*fnktry*igr*nsfsh*tfd*nlsimg*nvkin**tir*ry*fhk*
tnsnl*icnssn**tfkkc**yckcylsitkyyll*ssiiiiryfn*ryy**n*fkf*tf
*f*f*i*rkikinlnkkeyi*iktktkni*llfkkkk


Frame C:
fkk*iqimnq*lknvkhf*mhylieikiqillqnqlehk*lnlqkhylmklqkyhyy*qi
*eqkqnifhqlkkh*iiyfqstkvyqhiqerhylesfkfilen*lnqhkmyllhikimnn
h*vmmkriqsqsklqv*hgnvvrnlrkyqlkiqiqsslevkrfhh*fkmh*rrlknfkvn
*rilknnlvkslqrniksqkmvls*smanqppiklvtirkvmm*mvkfekededqdqded
edydaaddlellnnltkqdielvdkivsvierstkisqlwvemlksinkpsdedtdftse
qiqisesvihqinelsknvddiasaiyplpnityceaqlslldisikdiidkinsnfklf
nfnskfeeklksi*ikkniyk*kqkqkifnyylkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-BL06 (FC-BL06Q) /CSM/FC/FC-BL/FC-BL06Q.Seq.d/ 2093 0.0
VSK307 (VSK307Q) /CSM/VS/VSK3-A/VSK307Q.Seq.d/ 985 0.0
VSD718 (VSD718Q) /CSM/VS/VSD7-A/VSD718Q.Seq.d/ 42 0.019
VHG185 (VHG185Q) /CSM/VH/VHG1-D/VHG185Q.Seq.d/ 42 0.019
VFN404 (VFN404Q) /CSM/VF/VFN4-A/VFN404Q.Seq.d/ 42 0.019
VFC624 (VFC624Q) /CSM/VF/VFC6-A/VFC624Q.Seq.d/ 42 0.019
AHC384 (AHC384Q) /CSM/AH/AHC3-D/AHC384Q.Seq.d/ 42 0.019
AFL782 (AFL782Q) /CSM/AF/AFL7-D/AFL782Q.Seq.d/ 42 0.019
VSJ183 (VSJ183Q) /CSM/VS/VSJ1-D/VSJ183Q.Seq.d/ 38 0.30
VFM127 (VFM127Q) /CSM/VF/VFM1-B/VFM127Q.Seq.d/ 38 0.30

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 2e-15 26
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 32 2e-12 24
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 3e-12 28
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 34 2e-11 23
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 42 4e-10 25
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 36 8e-10 19
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 38 1e-09 21
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 38 2e-09 20
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 34 2e-09 24
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome. 36 5e-09 27
dna update 2003.12.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM450143_3(AM450143|pid:none) Vitis vinifera contig VV78X029772.... 39 3e-04
AF000657_8(AF000657|pid:none) Arabidopsis thaliana BAC F19G10, c... 49 5e-04
BT036569_1(BT036569|pid:none) Zea mays full-length cDNA clone ZM... 47 0.001
CP001252_897(CP001252|pid:none) Shewanella baltica OS223, comple... 43 0.019
CP001047_264(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 42 0.033
CP000348_291(CP000348|pid:none) Leptospira borgpetersenii serova... 42 0.043
AE010300_365(AE010300|pid:none) Leptospira interrogans serovar l... 41 0.096
BA000023_213(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ... 40 0.12
AY501887_1(AY501887|pid:none) Plasmodium vivax strain Salvador I... 40 0.16
(Q5U4I3) RecName: Full=Cyclin-D1-binding protein 1 homolog; &BC... 40 0.21
protein update 2009. 7. 3
PSORT

psg: 0.64 gvh: 0.59 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: nuclear
20.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for FC-BL06 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-BL06E
Full length Seq.
>FC-BL06E.Seq
AATTTAAAAAATGAATCCAAATTATGAACCAATAATTAAAAAATGTCAAACATTTTTAGA
TGCATTATTTAATAGAAATCAAGATACAGATACTTTTGCAAAACCAACTAGAGCACAAAT
AATTAAATCTGCAAAAACATTATCTCATGAAATTACAAAAATATCATTATTATTAGCAGA
TTTAAGAGCAAAAACAGAATATTTTTCATCAATTGAAGAAACATTAGATAATATATTTTC
AATCTACCAAGGTTTATCAGCATATTCAGGAGCGTCATTATTTAGAATCATTCAAATTTA
TTTTAGAAAATTAATTAAATCAACACAAGATGTATTTATTGCATATCAAAATAATGAACA
ATCATTAGGTGATGATGAAGAGAATACAATCTCAAAGCAAATTACAGGTTTAGCATGGAA
ATGTTGTGAGGAACTTGAGAAAGTACCAATTAAAAATTCAAATTCAATCATCTCTAGAGG
TGAAGAGATTTCATCATTGATTCAAGATGCATTAGAGGAGGTTAAAGAATTTCAAAGTAA
ATTAAAGAATCTTGAAAAACAATTTGGTCAAGTCTCTTCAGAGAAACATCAAGTCTCAAA
AGATGGTACTGTCATAGTCGATGGCGAATCAACCACCGATAAAGCTAGTAACGATAAGAA
AAGTGATGATGTAAATGGTGAAATTTGAAAAAGAGGATGAGGACCAAGATCAAGATGAAG
ATGAAGATTACGATGCTGCAGATGATCTTGAACTTTTAAATAATTTAACAAAACAAGATA
TTGAATTGGTAGATAAAATAGTTTCAGTCATTGAACGTTCGACTAAAATCTCTCAATTAT
GGGTTGAAATGTTAAAATCAATTAATAAACCATCCGATGAAGATACTGATTTCACAAGTG
AACAAATTCAAATCTCTGAATCTGTAATTCATCAAATTAATGAACTTTCAAAAAATGTTG
ATGATATTGCAAGTGCTATCTATCCATTACCAAATATTACTTATTGTGAAGCTCAATTAT
CATTATTAGATATTTCAATTAAAGATATTATTGATAAAATTAATTCAAATTTTAAACTTT
TTAATTTTAATTCTAAATTTGAAGAAAAATTAAAATCAATTTAAATAAAAAAGAATATAT
ATAAATAAAAACAAAAACAAAAAATATTTAATTATTATTTAAAAAAAAAAAAAA
Length of full length seq. 1194