>FC-BK22 (FC-BK22Q) /CSM/FC/FC-BK/FC-BK22Q.Seq.d/
XXXXXXXXXXAACGCGTGTTAGATCAATCAGAGTTCGTGGTGGTCACCAAAAATTCAGAG
CCTTAAGACTCGATACTGGTAATTTCTCATGGGCCACCGAAAAGTTCACCCGTAAATGTC
GTATCCTTAACGTCGTTTACAATGCCACCTCTAACGATTTAGTCCGTACCAATACCCTCG
TTAAAGGTTCAATCGTCCAAATTGATGCCACCCCATACAAACAATGGTATGAAACTCACT
ACGGTGTTGTTGTTGGTAAAAAGAAATCCGCCAAAAAGGACGGTGAAGCTGAACAAGTTG
TCAAGAAATCCGCTTCTCTCCTTGCCAAACTTGCCTCAAGAGCTAAGGGTAGAGTTTTAG
ATTCAGCCATCGAATAACAAATCGGTGAAGGTCGTTTCTTTGATCGTCTCACCTCAAGAC
CAGGTCAAGTCGGTAAATGTGATGGTTACTTCTTGAAGCTAAGGAATTAGAATTCTACCA
AAGCAGACTCCAAATGATGAAATCTGCCAAATAAACATACAGATTATTTTATTCATAAAT
TTATAAA

---TRVRSIRVRGGHQKFRALRLDTGNFSWATEKFTRKCRILNVVYNATSNDLVRTNTLV
KGSIVQIDATPYKQWYETHYGVVVGKKKSAKKDGEAEQVVKKSASLLAKLASRAKGRVLD
SAIE*qigegrffdrltsrpgqvgkcdgyflklrn*nstkadsk**nlpnkhtdyfihkf
i

Frame A:
---TRVRSIRVRGGHQKFRALRLDTGNFSWATEKFTRKCRILNVVYNATSNDLVRTNTLV
KGSIVQIDATPYKQWYETHYGVVVGKKKSAKKDGEAEQVVKKSASLLAKLASRAKGRVLD
SAIE*qigegrffdrltsrpgqvgkcdgyflklrn*nstkadsk**nlpnkhtdyfihkf
i


Frame B:
---rvldqsefvvvtknsep*dsilvishgppksspvnvvsltsftmpplti*svpipsl
kvqssklmpphtnngmklttvlllvkrnppkrtvklnklsrnpllslpnlpqelrvef*i
qpsnnksvkvvslivspqdqvksvnvmvts*s*girilpkqtpndeicqiniqiilfinl
*


Frame C:
---ac*inqsswwspkiqslktryw*flmghrkvhp*msyp*rrlqchl*rfspyqypr*
rfnrpn*chpiqtmv*nslrcccw*keirqkgr*s*tscqeirfspcqtclks*g*sfrf
shritnr*rsfl*sshlktrssr*m*wllleakelefyqsrlqmmksak*tyrlfys*iy
k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BK22 (FC-BK22Q) /CSM/FC/FC-BK/FC-BK22Q.Seq.d/                     1065   0.0
VSB514 (VSB514Q) /CSM/VS/VSB5-A/VSB514Q.Seq.d/                        977   0.0
FC-AC15 (FC-AC15Q) /CSM/FC/FC-AC/FC-AC15Q.Seq.d/                      977   0.0
VSB194 (VSB194Q) /CSM/VS/VSB1-D/VSB194Q.Seq.d/                        975   0.0
SLI851 (SLI851Q) /CSM/SL/SLI8-C/SLI851Q.Seq.d/                        969   0.0
VSI140 (VSI140Q) /CSM/VS/VSI1-B/VSI140Q.Seq.d/                        965   0.0
FC-AK23 (FC-AK23Q) /CSM/FC/FC-AK/FC-AK23Q.Seq.d/                      965   0.0
FC-066 (FC-066Q) /CSM/CG/CG-FC/FC-066Q.Seq.d/                         965   0.0
VSJ694 (VSJ694Q) /CSM/VS/VSJ6-D/VSJ694Q.Seq.d/                        957   0.0
VSI495 (VSI495Q) /CSM/VS/VSI4-D/VSI495Q.Seq.d/                        955   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX536988|AX536988.1 Sequence 589 from Patent WO02064766.          44  2e-11  3
AX073226|AX073226.1 Sequence 337 from Patent WO0102550.           44  5e-11  3
AX536426|AX536426.1 Sequence 27 from Patent WO02064766.           46  6e-08  2
AX072968|AX072968.1 Sequence 79 from Patent WO0102550.            46  6e-08  2
Z35833|Z35833.1 S.cerevisiae chromosome II reading frame ORF YBL072c.    46  1e-07  2
J05637|J05637.1 Yeast (S.cerevisiae) 70 kDa heat shock protein (SSA4) gene, complete cds.    46  2e-07  2
Z26879|Z26879.1 S.cerevisiae genes for small subunit ribosomal protein S8, splicing  factor, and chaperone.    46  4e-07  2
U18839|U18839.1 Saccharomyces cerevisiae chromosome V cosmids 9747, 8198, 9781, and lambda clones 3612 and 6052.    46  5e-06  3
AU007934|AU007934.1 Schizosaccharomyces pombe cDNA, clone spc02670.    42  2e-05  2
AU006870|AU006870.1 Schizosaccharomyces pombe cDNA, clone spc01058.    42  3e-04  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E24) RecName: Full=40S ribosomal protein S8;                      227   9e-63
DQ122869_1(DQ122869|pid:none) Chlamydomonas incerta 40S ribosoma...   150   4e-37
FJ002430_1(FJ002430|pid:none) Picrorhiza kurrooa putative 40S ri...   142   1e-34
BT053433_1(BT053433|pid:none) Medicago truncatula clone MTYFP_FQ...   141   3e-34
DQ200362_1(DQ200362|pid:none) Solanum tuberosum clone 054E02 unk...   140   5e-34
(Q08069) RecName: Full=40S ribosomal protein S8;  &BT035428_1(BT...   140   5e-34
BT066121_1(BT066121|pid:none) Zea mays full-length cDNA clone ZM...   140   5e-34
D38010_1(D38010|pid:none) Oryza sativa Japonica Group mRNA for r...   140   7e-34
(P49199) RecName: Full=40S ribosomal protein S8;  &AK102757_1(AK...   140   7e-34
AK068316_1(AK068316|pid:none) Oryza sativa Japonica Group cDNA c...   139   1e-33

 psg: 0.54  gvh: 0.40  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.50  mip: 0.04
 nuc: 0.19  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: endoplasmic reticulum

>> prediction for FC-BK22 is mit

>FC-BK22Z.Seq
----------AACGCGTGTTAGATCAATCAGAGTTCGTGGTGGTCACCAAAAATTCAGAG
CCTTAAGACTCGATACTGGTAATTTCTCATGGGCCACCGAAAAGTTCACCCGTAAATGTC
GTATCCTTAACGTCGTTTACAATGCCACCTCTAACGATTTAGTCCGTACCAATACCCTCG
TTAAAGGTTCAATCGTCCAAATTGATGCCACCCCATACAAACAATGGTATGAAACTCACT
ACGGTGTTGTTGTTGGTAAAAAGAAATCCGCCAAAAAGGACGGTGAAGCTGAACAAGTTG
TCAAGAAATCCGCTTCTCTCCTTGCCAAACTTGCCTCAAGAGCTAAGGGTAGAGTTTTAG
ATTCAGCCATCGAATAACAAATCGGTGAAGGTCGTTTCTTTGATCGTCTCACCTCAAGAC
CAGGTCAAGTCGGTAAATGTGATGGTTACTTCTTGAAGCTAAGGAATTAGAATTCTACCA
AAGCAGACTCCAAATGATGAAATCTGCCAAATAAACATACAGATTATTTTATTCATAAAT
TTATAAA