>FC-BK21 (FC-BK21Q) /CSM/FC/FC-BK/FC-BK21Q.Seq.d/
XXXXXXXXXXTTCATTGGCCAGTTGCTTTTGAATATACTAGCAATGATATTCAAACAAGT
GGTTCAACTCAAGAATTTGTTTCAATTCGTGAAACTTGGGAAGAAATGGAAAAATTAGTT
GATGCTGGCCTCGTTAAATCAATTGGTCTTTCAAATTTCAATGTTCAAGGTTTAATGGAA
GTTTTATCTTATGCTAGAATTAAACCAGCTGCAAACCAAGTTGAATTACATCCATTCCTT
TCACAACCAGAACTTAAAAAATTCTGTGATAAACATAATATTCATTTAACTGCATACAGT
CCATTAGGTAATGGTGCATTCGTTGATAATGAAGAAGTTGGTGCTATTGCAAAGAAATAT
AATAAAACCATTCCAAATGTTTTATGTAAATGGGCAATTCAAAAGAACTTTTCAGTTATT
CCAAAATCATCAACACCATCACGTGTTGCTGAAAACTTTGACCTTTTCAATTTCGAAATA
GAAGAAGCTGATATGCTCTTTTTAGATAAAATGGATAAAAATCTCCGTACTTGAGATCCA
GCTAAATTCTGGGGTGTACCACTTTTAATTGATAAATTGAAATATAATAAAATAAAATAA
AAACTTTTATTTTTTTTCAATATTAAAAA

---HWPVAFEYTSNDIQTSGSTQEFVSIRETWEEMEKLVDAGLVKSIGLSNFNVQGLMEV
LSYARIKPAANQVELHPFLSQPELKKFCDKHNIHLTAYSPLGNGAFVDNEEVGAIAKKYN
KTIPNVLCKWAIQKNFSVIPKSSTPSRVAENFDLFNFEIEEADMLFLDKMDKNLRT*dpa
kfwgvpllidklkynkik*kllfffnik

Frame A:
---slascf*iy*q*ysnkwfnsricfns*nlgrngkis*cwpr*inwsfkfqcsrfngs
filc*n*tsckps*itsipfttrt*kil**t*ysfnciqsir*wcir***rswcyckei*
*nhskcfm*mgnskelfsyskiintitcc*kl*pfqfrnrrs*yalfr*ng*kspylrss
*ilgcttfn**iei**nkiktfiffqy*k


Frame B:
---HWPVAFEYTSNDIQTSGSTQEFVSIRETWEEMEKLVDAGLVKSIGLSNFNVQGLMEV
LSYARIKPAANQVELHPFLSQPELKKFCDKHNIHLTAYSPLGNGAFVDNEEVGAIAKKYN
KTIPNVLCKWAIQKNFSVIPKSSTPSRVAENFDLFNFEIEEADMLFLDKMDKNLRT*dpa
kfwgvpllidklkynkik*kllfffnik


Frame C:
---igqlllnilamifkqvvqlknlfqfvklgkkwkn*lmlaslnqlvfqismfkv*wkf
ylmlelnqlqtklnyihsfhnqnlknsviniifi*lhtvh*vmvhslimkklvllqrnii
kpfqmfyvngqfkrtfqlfqnhqhhhvllktltfsisk*kklicsf*ikwikisvleiql
nsgvyhf*lin*niik*nknfyffsilk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BK21 (FC-BK21Q) /CSM/FC/FC-BK/FC-BK21Q.Seq.d/                     1100   0.0
FC-498 (FC-498Q) /CSM/CG/CG-FC/FC-498Q.Seq.d/                        1100   0.0
VSK165 (VSK165Q) /CSM/VS/VSK1-C/VSK165Q.Seq.d/                       1084   0.0
VSJ505 (VSJ505Q) /CSM/VS/VSJ5-A/VSJ505Q.Seq.d/                       1084   0.0
VSI169 (VSI169Q) /CSM/VS/VSI1-C/VSI169Q.Seq.d/                       1084   0.0
VSE794 (VSE794Q) /CSM/VS/VSE7-D/VSE794Q.Seq.d/                       1084   0.0
VSD404 (VSD404Q) /CSM/VS/VSD4-A/VSD404Q.Seq.d/                       1084   0.0
VFO319 (VFO319Q) /CSM/VF/VFO3-A/VFO319Q.Seq.d/                       1084   0.0
VFO223 (VFO223Q) /CSM/VF/VFO2-A/VFO223Q.Seq.d/                       1084   0.0
VFI406 (VFI406Q) /CSM/VF/VFI4-A/VFI406Q.Seq.d/                       1084   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

G65040|G65040.1 DH0618 Dictyostelium discoideum ( P.Dear ) Dictyostelium discoideum STS genomic 5', sequence tagged site.   398  e-141  2
BH163407|BH163407.1 ENTSQ08TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  8e-13  4
BH132929|BH132929.1 ENTNR31TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  1e-09  3
BH148714|BH148714.1 ENTQD13TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  1e-07  3
AZ682788|AZ682788.1 ENTIN55TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  9e-07  2
BH131756|BH131756.1 ENTNU24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  9e-07  2
AZ550589|AZ550589.1 ENTGH81TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  3e-04  3
AZ687515|AZ687515.1 ENTFZ43TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  3e-04  3
AZ669800|AZ669800.1 ENTMF41TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  3e-04  3
AC092098|AC092098.3 Homo sapiens chromosome 7 clone RP11-533K11, complete sequence.    42  3e-04  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB911079_1(FB911079|pid:none) Sequence 130352 from Patent WO2008...   164   1e-39
AC006841_2(AC006841|pid:none) Arabidopsis thaliana chromosome 2 ...   157   2e-37
FB911069_1(FB911069|pid:none) Sequence 130342 from Patent WO2008...   155   1e-36
AY087223_1(AY087223|pid:none) Arabidopsis thaliana clone 33 mRNA...   153   3e-36
FB911057_1(FB911057|pid:none) Sequence 130330 from Patent WO2008...   153   4e-36
BT038384_1(BT038384|pid:none) Zea mays full-length cDNA clone ZM...   152   9e-36
AP004885_13(AP004885|pid:none) Oryza sativa Japonica Group genom...   150   4e-35
AP008208_157(AP008208|pid:none) Oryza sativa (japonica cultivar-...   150   4e-35
CR318632_8(CR318632|pid:none) Zebrafish DNA sequence from clone ...   147   2e-34
U68535_1(U68535|pid:none) Mus musculus aldo-keto reductase mRNA,...   146   4e-34

 psg: 0.75  gvh: 0.35  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 24.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for FC-BK21 is cyt

>FC-BK21Z.Seq
----------TTCATTGGCCAGTTGCTTTTGAATATACTAGCAATGATATTCAAACAAGT
GGTTCAACTCAAGAATTTGTTTCAATTCGTGAAACTTGGGAAGAAATGGAAAAATTAGTT
GATGCTGGCCTCGTTAAATCAATTGGTCTTTCAAATTTCAATGTTCAAGGTTTAATGGAA
GTTTTATCTTATGCTAGAATTAAACCAGCTGCAAACCAAGTTGAATTACATCCATTCCTT
TCACAACCAGAACTTAAAAAATTCTGTGATAAACATAATATTCATTTAACTGCATACAGT
CCATTAGGTAATGGTGCATTCGTTGATAATGAAGAAGTTGGTGCTATTGCAAAGAAATAT
AATAAAACCATTCCAAATGTTTTATGTAAATGGGCAATTCAAAAGAACTTTTCAGTTATT
CCAAAATCATCAACACCATCACGTGTTGCTGAAAACTTTGACCTTTTCAATTTCGAAATA
GAAGAAGCTGATATGCTCTTTTTAGATAAAATGGATAAAAATCTCCGTACTTGAGATCCA
GCTAAATTCTGGGGTGTACCACTTTTAATTGATAAATTGAAATATAATAAAATAAAATAA
AAACTTTTATTTTTTTTCAATATTAAAAA