>FC-BK15 (FC-BK15Q) /CSM/FC/FC-BK/FC-BK15Q.Seq.d/
XXXXXXXXXXACGAAGGTGGTTGGGGTAGACGTGATGATGCTCCACCACCAAGACGTGAC
GAAGGTGGCGATAGATGGGGTAGACGTGATGATGCTCCACCAAGACGTGATGATGCTCCA
CCACCAAGACGTGATGATGCTCCACCACCAAGACGTGATGAAGGTGGTGATCGTTGGGGT
AGACGTGATGATGCTCCACCAAGAAGAGATGGAGGTGGTAGTGGTGGTTTCGGTGGTAGA
CGTGATGATGCCCCACCAAGACGTGACGAAGGTGGTGATCGTTGGGGTAGACGTGAAGAT
GCTCCACCACCAAGACGTGACGAAGGTGGTGATCGTTGGGGTAGACGTGATGATGCTCCA
CCAAGAAGAGACGGTGGTGGTGGTAGTGGTTTTGGTAGAAATCAAGGAGCCCAAGGTGAT
CAAAACGATAGCTGGAGATCCGATAACAAAAAAGAAGAAAACAAAAAAGATGCTGATGGT
TGGCAAACAGTTGGTGCCAAAAAGAGATATTAAACTCTTTATTCCACTCTTTTTTTAATC
ATTGTTATTTAATTGTATATCATTACTTATTATCTACAACTTTTAAAAAAAAAAAATCAT
TAAAATAAAAAAATAAATAAAAAAAAAAACTTATAAAAAAAA

---KVVGVDVMMLHHQDVTKVAIDGVDVMMLHQDVMMLHHQDVMMLHHQDVMKVVIVGVD
VMMLHQEEMEVVVVVSVVDVMMPHQDVTKVVIVGVDVKMLHHQDVTKVVIVGVDVMMLHQ
EETVVVVVVLVEIKEPKVIKTIAGDPITKKKKTKKMLMVGKQLVPKRDIKLFIPLFF*sl
lfncislliiynf*kkkiikikk*ikkktykk

Frame A:
---rrwlg*t**csttkt*rrwr*mg*t**cstkt**csttkt**csttkt**rw*slg*
t**cstkkrwrw*wwfrw*t**cptkt*rrw*slg*t*rcsttkt*rrw*slg*t**cst
kkrrwww*wfw*ksrspr*skr*leir*qkrrkqkrc*wlanswcqkeilnslfhsffnh
cylivyhyllsttfkkkkslk*knk*kkklikk


Frame B:
---eggwgrrddappprrdeggdrwgrrddapprrddappprrddappprrdeggdrwgr
rddapprrdgggsggfggrrddapprrdeggdrwgrredappprrdeggdrwgrrddapp
rrdggggsgfgrnqgaqgdqndswrsdnkkeenkkdadgwqtvgakkry*tlystlflii
vi*lyiityylqllkkknh*nkkinkkknl*kk


Frame C:
---KVVGVDVMMLHHQDVTKVAIDGVDVMMLHQDVMMLHHQDVMMLHHQDVMKVVIVGVD
VMMLHQEEMEVVVVVSVVDVMMPHQDVTKVVIVGVDVKMLHHQDVTKVVIVGVDVMMLHQ
EETVVVVVVLVEIKEPKVIKTIAGDPITKKKKTKKMLMVGKQLVPKRDIKLFIPLFF*sl
lfncislliiynf*kkkiikikk*ikkktykk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG168 (VHG168Q) /CSM/VH/VHG1-C/VHG168Q.Seq.d/                        866   0.0
FC-BK15 (FC-BK15Q) /CSM/FC/FC-BK/FC-BK15Q.Seq.d/                      866   0.0
CHL438 (CHL438Q) /CSM/CH/CHL4-B/CHL438Q.Seq.d/                        866   0.0
CHL387 (CHL387Q) /CSM/CH/CHL3-D/CHL387Q.Seq.d/                        866   0.0
CHK304 (CHK304Q) /CSM/CH/CHK3-A/CHK304Q.Seq.d/                        866   0.0
FC-363 (FC-363Q) /CSM/CG/CG-FC/FC-363Q.Seq.d/                         866   0.0
AHG546 (AHG546Q) /CSM/AH/AHG5-B/AHG546Q.Seq.d/                        866   0.0
AHD669 (AHD669Q) /CSM/AH/AHD6-C/AHD669Q.Seq.d/                        866   0.0
VHD318 (VHD318Q) /CSM/VH/VHD3-A/VHD318Q.Seq.d/                        860   0.0
AHB405 (AHB405Q) /CSM/AH/AHB4-A/AHB405Q.Seq.d/                        850   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.   866  0.0  7
AJ508926|AJ508926.1 Acanthoscurria gomesiana mRNA for acanthoscurrin 2 precursor  (acantho2 gene).    30  0.002  4
AJ508925|AJ508925.1 Acanthoscurria gomesiana mRNA for acanthoscurrin 1 precursor  (acantho1 gene).    30  0.002  4
BF747046|BF747046.1 CM3-BT0861-241100-496-d09 BT0861 Homo sapiens cDNA, mRNA sequence.    36  0.052  3
AZ137108|AZ137108.1 SP_0175_A2_D12_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=175 Col=24 Row=G, DNA sequence.    32  0.059  3
AQ487936|AQ487936.1 RPCI-11-260F11.TV RPCI-11 Homo sapiens genomic clone RPCI-11-260F11, genomic survey sequence.    32  0.068  3
BM278816|BM278816.1 As_tgz_67G12_SKPL Ascaris suum adult male testis germinal zone from Alan Scott Ascaris suum cDNA clone As_tgz_67G12 5', mRNA sequence.    34  0.078  3
AC015936|AC015936.14 Homo sapiens chromosome 17, clone CTD-2534I21, complete sequence.    42  0.11  2
BZ061598|BZ061598.1 llf03f10.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    48  0.13  1
AC130777|AC130777.2 Rattus norvegicus clone CH230-24M8, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42  0.14  3

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 353,876,652

 psg: 0.68  gvh: 0.28  alm: 0.32  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 44.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for FC-BK15 is nuc

>FC-BK15Z.Seq
----------ACGAAGGTGGTTGGGGTAGACGTGATGATGCTCCACCACCAAGACGTGAC
GAAGGTGGCGATAGATGGGGTAGACGTGATGATGCTCCACCAAGACGTGATGATGCTCCA
CCACCAAGACGTGATGATGCTCCACCACCAAGACGTGATGAAGGTGGTGATCGTTGGGGT
AGACGTGATGATGCTCCACCAAGAAGAGATGGAGGTGGTAGTGGTGGTTTCGGTGGTAGA
CGTGATGATGCCCCACCAAGACGTGACGAAGGTGGTGATCGTTGGGGTAGACGTGAAGAT
GCTCCACCACCAAGACGTGACGAAGGTGGTGATCGTTGGGGTAGACGTGATGATGCTCCA
CCAAGAAGAGACGGTGGTGGTGGTAGTGGTTTTGGTAGAAATCAAGGAGCCCAAGGTGAT
CAAAACGATAGCTGGAGATCCGATAACAAAAAAGAAGAAAACAAAAAAGATGCTGATGGT
TGGCAAACAGTTGGTGCCAAAAAGAGATATTAAACTCTTTATTCCACTCTTTTTTTAATC
ATTGTTATTTAATTGTATATCATTACTTATTATCTACAACTTTTAAAAAAAAAAAATCAT
TAAAATAAAAAAATAAATAAAAAAAAAAACTTATAAAAAAAA