>FC-BK12 (FC-BK12Q) /CSM/FC/FC-BK/FC-BK12Q.Seq.d/
XXXXXXXXXXTCATTGGCCAGTTGCTTTTGAATATACTAGCAATGATATTCAAACAAGTG
GTTCAACTCAAGAATTTGTTTCAATTCGTGAAACTTGGGAAGAAATGGAAAAATTAGTTG
ATGCTGGCCTCGTTAAATCAATTGGTCTTTCAAATTTCAATGTTCAAGGTTTAATGGAAG
TTTTATCTTATGCTAGAATTAAACCAGCTGCAAACCAAGTTGAATTACATCCATTCCTTT
CACAACCAGAACTTAAAAAATTCTGTGATAAACATAATATTCATTTAACTGCATACAGTC
CATTAGGTAATGGTGCATTCGTTGATAATGAAGAAGTTGGTGCTATTGCAAAGAAATATA
ATAAAACCATTCCAAATGTTTTATGTAAATGGGCAATTCAAAAGAACTTTTCAGTTATTC
CAAAATCATCAACACCATCACGTGTTGCTGAAAACTTTGACCTTTTCAATTTCGAATCGA
AGAAGCTGATATGCTCTTTTTAGATAAAATGGATAAAAATCTCCGTACTTGCGATCCAGC
TAAATTCTGGGGTGTACCACTTTTCACCTAATAATTGAAATATAATAAAATAAAATAAAA
ACTTTTACTTTTTTTCAATATTAAAAA

---HWPVAFEYTSNDIQTSGSTQEFVSIRETWEEMEKLVDAGLVKSIGLSNFNVQGLMEV
LSYARIKPAANQVELHPFLSQPELKKFCDKHNIHLTAYSPLGNGAFVDNEEVGAIAKKYN
KTIPNVLCKWAIQKNFSVIPKSSTPSRVAENFDLFNFESKKLICSF*ikwikisvlaiql
nsgvyhfspnn*niik*nknfyffsilk

Frame A:
---HWPVAFEYTSNDIQTSGSTQEFVSIRETWEEMEKLVDAGLVKSIGLSNFNVQGLMEV
LSYARIKPAANQVELHPFLSQPELKKFCDKHNIHLTAYSPLGNGAFVDNEEVGAIAKKYN
KTIPNVLCKWAIQKNFSVIPKSSTPSRVAENFDLFNFESKKLICSF*ikwikisvlaiql
nsgvyhfspnn*niik*nknfyffsilk


Frame B:
---igqlllnilamifkqvvqlknlfqfvklgkkwkn*lmlaslnqlvfqismfkv*wkf
ylmlelnqlqtklnyihsfhnqnlknsviniifi*lhtvh*vmvhslimkklvllqrnii
kpfqmfyvngqfkrtfqlfqnhqhhhvllktltfsisnrrs*yalfr*ng*kspylrss*
ilgcttfhliiei**nkiktftffqy*k


Frame C:
---lascf*iy*q*ysnkwfnsricfns*nlgrngkis*cwpr*inwsfkfqcsrfngsf
ilc*n*tsckps*itsipfttrt*kil**t*ysfnciqsir*wcir***rswcyckei**
nhskcfm*mgnskelfsyskiintitcc*kl*pfqfrieeadmlfldkmdknlrtcdpak
fwgvplft**lkynkik*klllffnik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BK12 (FC-BK12Q) /CSM/FC/FC-BK/FC-BK12Q.Seq.d/                     1106   0.0
VSK165 (VSK165Q) /CSM/VS/VSK1-C/VSK165Q.Seq.d/                       1088   0.0
VSJ505 (VSJ505Q) /CSM/VS/VSJ5-A/VSJ505Q.Seq.d/                       1088   0.0
VSI169 (VSI169Q) /CSM/VS/VSI1-C/VSI169Q.Seq.d/                       1088   0.0
VSE794 (VSE794Q) /CSM/VS/VSE7-D/VSE794Q.Seq.d/                       1088   0.0
VSD404 (VSD404Q) /CSM/VS/VSD4-A/VSD404Q.Seq.d/                       1088   0.0
VFO319 (VFO319Q) /CSM/VF/VFO3-A/VFO319Q.Seq.d/                       1088   0.0
VFO223 (VFO223Q) /CSM/VF/VFO2-A/VFO223Q.Seq.d/                       1088   0.0
VFI406 (VFI406Q) /CSM/VF/VFI4-A/VFI406Q.Seq.d/                       1088   0.0
VSG365 (VSG365Q) /CSM/VS/VSG3-C/VSG365Q.Seq.d/                       1080   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

G65040|G65040.1 DH0618 Dictyostelium discoideum ( P.Dear ) Dictyostelium discoideum STS genomic 5', sequence tagged site.   396  e-140  2
BH163407|BH163407.1 ENTSQ08TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  6e-10  3
BH148714|BH148714.1 ENTQD13TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  1e-07  3
BH132929|BH132929.1 ENTNR31TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  7e-07  2
AZ682788|AZ682788.1 ENTIN55TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  9e-07  2
BH131756|BH131756.1 ENTNU24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  9e-07  2
AZ550589|AZ550589.1 ENTGH81TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  3e-04  3
AZ687515|AZ687515.1 ENTFZ43TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  3e-04  3
AZ669800|AZ669800.1 ENTMF41TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  3e-04  3
AC092098|AC092098.3 Homo sapiens chromosome 7 clone RP11-533K11, complete sequence.    40  0.001  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB911079_1(FB911079|pid:none) Sequence 130352 from Patent WO2008...   139   6e-37
AC006841_2(AC006841|pid:none) Arabidopsis thaliana chromosome 2 ...   134   5e-35
FB911069_1(FB911069|pid:none) Sequence 130342 from Patent WO2008...   134   7e-34
AY087223_1(AY087223|pid:none) Arabidopsis thaliana clone 33 mRNA...   135   9e-34
FB911057_1(FB911057|pid:none) Sequence 130330 from Patent WO2008...   129   8e-33
AP008208_157(AP008208|pid:none) Oryza sativa (japonica cultivar-...   125   1e-32
AP004885_13(AP004885|pid:none) Oryza sativa Japonica Group genom...   125   1e-32
BT038384_1(BT038384|pid:none) Zea mays full-length cDNA clone ZM...   128   2e-32
CR318632_8(CR318632|pid:none) Zebrafish DNA sequence from clone ...   139   8e-32
CP000348_166(CP000348|pid:none) Leptospira borgpetersenii serova...   126   2e-31

 psg: 0.75  gvh: 0.35  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for FC-BK12 is cyt

>FC-BK12Z.Seq
----------TCATTGGCCAGTTGCTTTTGAATATACTAGCAATGATATTCAAACAAGTG
GTTCAACTCAAGAATTTGTTTCAATTCGTGAAACTTGGGAAGAAATGGAAAAATTAGTTG
ATGCTGGCCTCGTTAAATCAATTGGTCTTTCAAATTTCAATGTTCAAGGTTTAATGGAAG
TTTTATCTTATGCTAGAATTAAACCAGCTGCAAACCAAGTTGAATTACATCCATTCCTTT
CACAACCAGAACTTAAAAAATTCTGTGATAAACATAATATTCATTTAACTGCATACAGTC
CATTAGGTAATGGTGCATTCGTTGATAATGAAGAAGTTGGTGCTATTGCAAAGAAATATA
ATAAAACCATTCCAAATGTTTTATGTAAATGGGCAATTCAAAAGAACTTTTCAGTTATTC
CAAAATCATCAACACCATCACGTGTTGCTGAAAACTTTGACCTTTTCAATTTCGAATCGA
AGAAGCTGATATGCTCTTTTTAGATAAAATGGATAAAAATCTCCGTACTTGCGATCCAGC
TAAATTCTGGGGTGTACCACTTTTCACCTAATAATTGAAATATAATAAAATAAAATAAAA
ACTTTTACTTTTTTTCAATATTAAAAA