>FC-BJ15 (FC-BJ15Q) /CSM/FC/FC-BJ/FC-BJ15Q.Seq.d/
XXXXXXXXXXTGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAAT
TTAGTGAAGACTTGGCAAATCAAGGTAAAACCGTTTTAATTGCCGCACTAGATGGTCCCT
TCCAAAGAAAACCCTTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATATTACAA
AGTTCACTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCG
AAAGTGATGATATCGAATTAATTGGTGGTCTAGATAAATATATTTCCGTTTGCCGTGGTT
GCTACAATAGTGATCAAAATGAAGGAAATAGTTCCAAACCAAGCAAAACCGCACGTCATT
CTCCTTCTCAAAGCGCACCATCCGTTGCTCCCCTTGCTGTAAACATTAATCCTGATGATC
ATTTAAATAATGATTATTAAATTTGAAGATCCTAATTATATTTGTACATTTTCAATCTCA
TAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---DVIGIDEGQFFPDVVQFSEDLANQGKTVLIAALDGPFQRKPFQSVIDLVSKAEYITK
FTAVCMVCYNEAAFSKRIVESDDIELIGGLDKYISVCRGCYNSDQNEGNSSKPSKTARHS
PSQSAPSVAPLAVNINPDDHLNNDY*i*rs*lylyifnliikkkkkkkkkkkkkkkkk

Frame A:
---DVIGIDEGQFFPDVVQFSEDLANQGKTVLIAALDGPFQRKPFQSVIDLVSKAEYITK
FTAVCMVCYNEAAFSKRIVESDDIELIGGLDKYISVCRGCYNSDQNEGNSSKPSKTARHS
PSQSAPSVAPLAVNINPDDHLNNDY*i*rs*lylyifnliikkkkkkkkkkkkkkkkk


Frame B:
---m*lvlmkanfsqtlynlvktwqikvkpf*lph*mvpskenpsnqsli*yqrlnilqs
slpfvwfatmkppfqnvsskvmisn*lvv*inifpfavvativikmkeivpnqakphvil
llkahhpllpll*tlilmii*imiikfedpnyictfsis*skkkkkkkkkkkkkkkkk


Frame C:
---cnwy**rpifprrcti**rlgksr*nrfncrtrwslpkktlpish*fsikg*iyykv
hcrlygllq*srlfktyrrk**yrinwwsr*iyfrlpwllq**sk*rk*fqtkqnrtsfs
fskrtircspcckh*s**sfk**llnlkiliifvhfqshnqkkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BJ15 (FC-BJ15Q) /CSM/FC/FC-BJ/FC-BJ15Q.Seq.d/                      942   0.0
SSH134 (SSH134Q) /CSM/SS/SSH1-B/SSH134Q.Seq.d/                        833   0.0
SSF620 (SSF620Q) /CSM/SS/SSF6-A/SSF620Q.Seq.d/                        833   0.0
SSE604 (SSE604Q) /CSM/SS/SSE6-A/SSE604Q.Seq.d/                        833   0.0
SSC741 (SSC741Q) /CSM/SS/SSC7-B/SSC741Q.Seq.d/                        833   0.0
SSC346 (SSC346Q) /CSM/SS/SSC3-B/SSC346Q.Seq.d/                        833   0.0
SSB238 (SSB238Q) /CSM/SS/SSB2-B/SSB238Q.Seq.d/                        833   0.0
SSA406 (SSA406Q) /CSM/SS/SSA4-A/SSA406Q.Seq.d/                        833   0.0
AFB533 (AFB533Q) /CSM/AF/AFB5-B/AFB533Q.Seq.d/                        833   0.0
SLH838 (SLH838Q) /CSM/SL/SLH8-B/SLH838Q.Seq.d/                        827   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF510846|AF510846.1 Dictyostelium discoideum calmodulin-binding protein ThyB (thyB) mRNA, complete cds.   833  0.0  1
U61990|U61990.1 Dictyostelium discoideum ThyB (thyB) mRNA, complete cds.   803  0.0  1
CB888459|CB888459.1 taa92g08.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:KITH_CHICK P04047 THYMIDINE KINASE, CYTOSOLIC ;, mRNA sequence.    56  4e-04  1
CB823884|CB823884.1 EST 5108 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh002g05 3', mRNA sequence.    50  0.027  1
CB823537|CB823537.1 EST 4761 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh006p21 3', mRNA sequence.    50  0.027  1
AC142089|AC142089.2 Danio rerio clone CH211-4J20 strain Tue, WORKING DRAFT SEQUENCE, 7 ordered pieces.    42  0.24  2
AP000756|AP000756.6 Homo sapiens genomic DNA, chromosome 11 clone:RP11-720D4, complete sequence.    44  1.7  1
AC105530|AC105530.4 Rattus norvegicus clone CH230-220G8, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    44  1.7  1
AL031650|AL031650.22 Human DNA sequence from clone RP5-1018D12 on chromosome  20q11.1-11.22 Contains two putative novel genes, a RPL31 (60S  Ribosomal Protein L31) pseudogene, a pseudogene similar to rat CDK5  Activator binding protein, a pseudogene similar to FLJ20060 FIS,  ESTs, STSs, and GSSs.    44  1.7  1
J05161|J05161.1 Earthworm (L.terrestris) extracellular globin chain c gene, complete cds.    44  1.7  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM905441_1(AM905441|pid:none) Suberites domuncula mRNA for thymi...   135   6e-31
DQ441416_85(DQ441416|pid:none) Variola virus strain Benin, Dahom...   134   1e-30
(P04364) RecName: Full=Thymidine kinase;          EC=2.7.1.21;  ...   134   1e-30
AB451268_1(AB451268|pid:none) Homo sapiens TK1 mRNA for thymidin...   134   1e-30
(P04183) RecName: Full=Thymidine kinase, cytosolic;          EC=...   134   1e-30
(P68563) RecName: Full=Thymidine kinase;          EC=2.7.1.21;  ...   134   1e-30
AY335565_1(AY335565|pid:none) Synthetic construct Homo sapiens t...   134   1e-30
AY192987_1(AY192987|pid:none) Danio rerio thymidine kinase 1 (TK...   134   2e-30
AF163844_1(AF163844|pid:none) Cowpox virus thymidine kinase gene...   134   2e-30
M11945_1(M11945|pid:none) Mouse cytosolic thymidine kinase mRNA ...   133   2e-30

 psg: 0.75  gvh: 0.37  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial

>> prediction for FC-BJ15 is cyt

>FC-BJ15Z.Seq
----------TGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAAT
TTAGTGAAGACTTGGCAAATCAAGGTAAAACCGTTTTAATTGCCGCACTAGATGGTCCCT
TCCAAAGAAAACCCTTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATATTACAA
AGTTCACTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCG
AAAGTGATGATATCGAATTAATTGGTGGTCTAGATAAATATATTTCCGTTTGCCGTGGTT
GCTACAATAGTGATCAAAATGAAGGAAATAGTTCCAAACCAAGCAAAACCGCACGTCATT
CTCCTTCTCAAAGCGCACCATCCGTTGCTCCCCTTGCTGTAAACATTAATCCTGATGATC
ATTTAAATAATGATTATTAAATTTGAAGATCCTAATTATATTTGTACATTTTCAATCTCA
TAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA