>FC-BJ12 (FC-BJ12Q) /CSM/FC/FC-BJ/FC-BJ12Q.Seq.d/
XXXXXXXXXXGTTCGTGGTGGTCACCAAAAATTCAGAGCCTTAAGACTCGATACTGGTAA
TTTCTCATGGGCCACCGAAAAGATCACCCGTAAATGTCGTATCCTTAACGTCGTTTACAA
TGCCACCTCTAACGATTTAGTCCGTCCCAATCCCCTCGTTAAAGGTTCAATCGTCCAAAT
TGATGCCACCCCATACAAACAATGGTATGAAACTCACTACGGTGTTGTTGTTGGTAAAAA
GAAATCCGCCAAAAAGGACGGTGAAGCTGAACAAGTTGTCAAGAAATCCGCTTCTCTCCT
TGCCAAACTTGCCTCAAGAGCTAAGGGTAGAGTTTTAGATTCAGCCATCGAATCACAAAT
CGGTGAAGGTAATTTCTTTGCTCGTATCACCTAAAGACAAGGTCAAGTCGGTAAATGTGA
TGGTTACATCTTGGAAGCTAAGGAATAAAATTCTACCAAAGAAGACTCCAAAAGAAGAAA
TACTAACAAATAAACATACAGATTATTTTATTCATAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

---RGGHQKFRALRLDTGNFSWATEKITRKCRILNVVYNATSNDLVRPNPLVKGSIVQID
ATPYKQWYETHYGVVVGKKKSAKKDGEAEQVVKKSASLLAKLASRAKGRVLDSAIESQIG
EGNFFARIT*rqgqvgkcdgyileake*nstkedskrrntnk*tyrlfys*kkkkkkkk

Frame A:
---fvvvtknsep*dsilvishgppkrspvnvvsltsftmpplti*svpipslkvqsskl
mpphtnngmklttvlllvkrnppkrtvklnklsrnpllslpnlpqelrvef*iqpsnhks
vkvisllvspkdkvksvnvmvtswklrnkilpkktpkeeiltnkhtdyfihkkkkkkkkk


Frame B:
---swwspkiqslktryw*flmghrkdhp*msyp*rrlqchl*rfspsqspr*rfnrpn*
chpiqtmv*nslrcccw*keirqkgr*s*tscqeirfspcqtclks*g*sfrfshritnr
*r*flcsyhlktrssr*m*wlhlgs*gikfyqrrlqkkky*qiniqiilfikkkkkkkkk


Frame C:
---RGGHQKFRALRLDTGNFSWATEKITRKCRILNVVYNATSNDLVRPNPLVKGSIVQID
ATPYKQWYETHYGVVVGKKKSAKKDGEAEQVVKKSASLLAKLASRAKGRVLDSAIESQIG
EGNFFARIT*rqgqvgkcdgyileake*nstkedskrrntnk*tyrlfys*kkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BJ12 (FC-BJ12Q) /CSM/FC/FC-BJ/FC-BJ12Q.Seq.d/                     1001   0.0
VSI140 (VSI140Q) /CSM/VS/VSI1-B/VSI140Q.Seq.d/                        892   0.0
VSB514 (VSB514Q) /CSM/VS/VSB5-A/VSB514Q.Seq.d/                        892   0.0
VSB194 (VSB194Q) /CSM/VS/VSB1-D/VSB194Q.Seq.d/                        892   0.0
FC-AK23 (FC-AK23Q) /CSM/FC/FC-AK/FC-AK23Q.Seq.d/                      892   0.0
FC-AC15 (FC-AC15Q) /CSM/FC/FC-AC/FC-AC15Q.Seq.d/                      892   0.0
FC-066 (FC-066Q) /CSM/CG/CG-FC/FC-066Q.Seq.d/                         892   0.0
VSJ694 (VSJ694Q) /CSM/VS/VSJ6-D/VSJ694Q.Seq.d/                        890   0.0
VSI495 (VSI495Q) /CSM/VS/VSI4-D/VSI495Q.Seq.d/                        888   0.0
SLI851 (SLI851Q) /CSM/SL/SLI8-C/SLI851Q.Seq.d/                        886   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX536988|AX536988.1 Sequence 589 from Patent WO02064766.          48  1e-12  3
AX073226|AX073226.1 Sequence 337 from Patent WO0102550.           48  3e-12  3
AX536426|AX536426.1 Sequence 27 from Patent WO02064766.           54  3e-10  2
AX072968|AX072968.1 Sequence 79 from Patent WO0102550.            54  3e-10  2
Z35833|Z35833.1 S.cerevisiae chromosome II reading frame ORF YBL072c.    54  6e-10  2
J05637|J05637.1 Yeast (S.cerevisiae) 70 kDa heat shock protein (SSA4) gene, complete cds.    54  9e-10  2
Z26879|Z26879.1 S.cerevisiae genes for small subunit ribosomal protein S8, splicing  factor, and chaperone.    54  2e-09  2
U18839|U18839.1 Saccharomyces cerevisiae chromosome V cosmids 9747, 8198, 9781, and lambda clones 3612 and 6052.    54  1e-08  2
AU007934|AU007934.1 Schizosaccharomyces pombe cDNA, clone spc02670.    42  2e-05  2
T37794|T37794.1 EST103047 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    54  2e-05  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E24) RecName: Full=40S ribosomal protein S8;                      220   2e-56
DQ122869_1(DQ122869|pid:none) Chlamydomonas incerta 40S ribosoma...   143   2e-33
FJ002430_1(FJ002430|pid:none) Picrorhiza kurrooa putative 40S ri...   136   3e-31
FM992689_507(FM992689|pid:none) Candida dubliniensis CD36 chromo...   135   5e-31
CR382125_889(CR382125|pid:none) Kluyveromyces lactis strain NRRL...   135   6e-31
CR380947_188(CR380947|pid:none) Candida glabrata strain CBS138 c...   135   6e-31
BT053433_1(BT053433|pid:none) Medicago truncatula clone MTYFP_FQ...   135   8e-31
(Q08069) RecName: Full=40S ribosomal protein S8;  &BT035428_1(BT...   134   1e-30
BT066121_1(BT066121|pid:none) Zea mays full-length cDNA clone ZM...   134   1e-30
D38010_1(D38010|pid:none) Oryza sativa Japonica Group mRNA for r...   134   1e-30

 psg: 0.73  gvh: 0.43  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 32.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for FC-BJ12 is mit

>FC-BJ12Z.Seq
----------GTTCGTGGTGGTCACCAAAAATTCAGAGCCTTAAGACTCGATACTGGTAA
TTTCTCATGGGCCACCGAAAAGATCACCCGTAAATGTCGTATCCTTAACGTCGTTTACAA
TGCCACCTCTAACGATTTAGTCCGTCCCAATCCCCTCGTTAAAGGTTCAATCGTCCAAAT
TGATGCCACCCCATACAAACAATGGTATGAAACTCACTACGGTGTTGTTGTTGGTAAAAA
GAAATCCGCCAAAAAGGACGGTGAAGCTGAACAAGTTGTCAAGAAATCCGCTTCTCTCCT
TGCCAAACTTGCCTCAAGAGCTAAGGGTAGAGTTTTAGATTCAGCCATCGAATCACAAAT
CGGTGAAGGTAATTTCTTTGCTCGTATCACCTAAAGACAAGGTCAAGTCGGTAAATGTGA
TGGTTACATCTTGGAAGCTAAGGAATAAAATTCTACCAAAGAAGACTCCAAAAGAAGAAA
TACTAACAAATAAACATACAGATTATTTTATTCATAAAAAAAAAAAAAAAAAAAAAAAAA
AAA