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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BI24
Library FC
(Link to library)
Clone ID FC-BI24
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15792-1
Original site URL
Representative seq. ID FC-BI24P
(Link to Original site)
Representative DNA sequence 
>FC-BI24 (FC-BI24Q) /CSM/FC/FC-BI/FC-BI24Q.Seq.d/
CAAAAATGTTTAGTTTAGGAAAATTGGTTAAAAAAGATGCTTCTTTTTATAGATATATAA
CAAATGTTAATAAAGATTTAAAAATTAAACCAATTACAAAGATATTAATTGCAAATAGAG
GTGAAATTGCATGTCGTGTAATGAGAACAGCAAAATCAAAAGGTGTAAAAACCGTAGCAG
TTTATAGTGAAGCAGATAAGAATTCATTACATGTTTCAATGGCAGATGAGAGTTATTTAA
TTGGACCAGCAGCAGCCAAAGAGAGTTATTTATGTGGAAATAAGATCATAGATGTAGCAA
AGAGATCTGGAGCACAAGCAATTCATCCAGGTTATGGTTTCTTATCAGAGAATTCAGATT
TTGCTGATCTCTGTGAGAGAGAAGGTATCATTTTCATTGGACCACCATCAGATGCAATCA
AAGCAATGGGTAGCAAAAGTGCCTCAAAGGATATTATGATCAAAGCTGGCGTACCAACCA
TCCCAGGTTACCACGGTGAAGATCAGTCAATGAGTGTGTTGAAGAGTGAGGCTGCAAAGA
TTGGCTATCCAGTATTGATTAAAGCTGTTATGGGTGGTGGTGGTAAAGGTATGAGAATCG
TTGAGAGAGAGGAGGATTTAGAGGACGGTGTTGAGTCCTCAAAGAGAGAGXXXXXXXXXX
AAAAAAACAAGTTAAATTCAATCAAAAAGATAATAAAGTTGTTGTTAATGTTGAATTCAT
TGGTGGTGGTGGTGCTGCTGCTAATGGTAAACATAACTTTAAAGTAACTTTAGATAATGG
TAATGTCGTTGAAGTTTTAGATGCAAAATTAAATCAAAATAATGAAACTATTAGTGCTCA
TGTAAATGGTAGATTCTATAATAACATTAAATCCGTCATTGTAAAGGATACTTTAACAAT
CTTTAATGAAGGTCAACAATACCAATTGGATATTCCTCAAGATGTTAAACCAAAAGGTGC
TGATGGTGTATTGGGTTCTTTAGTTTCACCAATGCCTGGAAAAATCACTAAAGTTATGGT
AAATGTTGGTGACATGGTTAAAAAGGGTCAACCAATCTTACTCATGGAAGCAATGAAAAT
GGAACATACTATTCGTTCTCCAATCGATGGTAAAAATGAATCATTACCTTATAATGTTAA
TGAAATCGTTGAGGATAAGAAAACTTTGGCTGTTATTGTTTAAAAAATAAAAAAGAAATT
AAAAAAAAAAAATGAAAAAATGGGAAAGTGGAAAATAAAATAAAAAATAAAAAATAAAAA
AAAAAAATGTTTAAAAAAAAAAAATAA
sequence update 1998. 2.19
Translated Amino Acid sequence 
KMFSLGKLVKKDASFYRYITNVNKDLKIKPITKILIANRGEIACRVMRTAKSKGVKTVAV
YSEADKNSLHVSMADESYLIGPAAAKESYLCGNKIIDVAKRSGAQAIHPGYGFLSENSDF
ADLCEREGIIFIGPPSDAIKAMGSKSASKDIMIKAGVPTIPGYHGEDQSMSVLKSEAAKI
GYPVLIKAVMGGGGKGMRIVEREEDLEDGVESSKRE---

---KKQVKFNQKDNKVVVNVEFIGGGGAAANGKHNFKVTLDNGNVVEVLDAKLNQNNETI
SAHVNGRFYNNIKSVIVKDTLTIFNEGQQYQLDIPQDVKPKGADGVLGSLVSPMPGKITK
VMVNVGDMVKKGQPILLMEAMKMEHTIRSPIDGKNESLPYNVNEIVEDKKTLAVIV*kik
kklkkknekmgkwkik*kiknkkkkclkkkn
Translated Amino Acid sequence (All Frames) 
Frame A:
qkclv*enwlkkmllfidi*qmliki*klnqlqry*lqievklhvv**eqqnqkv*kp*q
fivkqirihymfqwqmrvi*ldqqqpkrviyveirs*m*qrdlehkqfiqvmvsyqriqi
llisvrekvsfsldhhqmqskqwvakvpqril*sklayqpsqvttvkisq*vc*rvrlqr
laiqy*lkllwvvvvkv*eslrerri*rtvlspqre---

---kkts*iqskr**scc*c*ihwwwwccc*w*t*l*snfr*w*cr*sfrckiksk**ny
*csckw*il**h*irhckgyfnnl**rstipigyssrc*tkrc*wcigffsftnawknh*
sygkcw*hg*kgstnlthgsnengtyysfsnrw*k*iitl*c**nr*g*enfgcyclknk
keikkkk*kngkvenkiknkk*kkkmfkkkk*

Frame B:
knv*frkig*krcffl*iynkc**rfkn*tnykdinck*r*ncmscnenskikrcknrss
l**sr*efitcfngr*elfnwtsssqrelfmwk*dhrcskeiwstsnssrlwflirefrf
c*sl*erryhfhwttircnqsng*qkclkgyydqswrtnhprlpr*rsvnecvee*gckd
wlssid*scygwww*ryenr*erggfrgrc*vlker---

---KKQVKFNQKDNKVVVNVEFIGGGGAAANGKHNFKVTLDNGNVVEVLDAKLNQNNETI
SAHVNGRFYNNIKSVIVKDTLTIFNEGQQYQLDIPQDVKPKGADGVLGSLVSPMPGKITK
VMVNVGDMVKKGQPILLMEAMKMEHTIRSPIDGKNESLPYNVNEIVEDKKTLAVIV*kik
kklkkknekmgkwkik*kiknkkkkclkkkn

Frame C:
KMFSLGKLVKKDASFYRYITNVNKDLKIKPITKILIANRGEIACRVMRTAKSKGVKTVAV
YSEADKNSLHVSMADESYLIGPAAAKESYLCGNKIIDVAKRSGAQAIHPGYGFLSENSDF
ADLCEREGIIFIGPPSDAIKAMGSKSASKDIMIKAGVPTIPGYHGEDQSMSVLKSEAAKI
GYPVLIKAVMGGGGKGMRIVEREEDLEDGVESSKRE---

---knklnsikkiiklllmlnslvvvvlllmvnitlk*l*imvmslkf*mqn*ikimkll
vlm*mvdsiitlnpsl*ril*qslmkvnntnwiflkmlnqkvlmvywvl*fhqclekslk
lw*mlvtwlkrvnqsyswkq*kwnilfvlqsmvkmnhylimlmkslrirklwlllfkk*k
rn*kkkmkkwesgk*nkk*kikkknv*kkki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BI24 (FC-BI24Q) /CSM/FC/FC-BI/FC-BI24Q.Seq.d/                     1289   0.0
CFC144 (CFC144Q) /CSM/CF/CFC1-B/CFC144Q.Seq.d/                       1233   0.0
VHB677 (VHB677Q) /CSM/VH/VHB6-D/VHB677Q.Seq.d/                       1126   0.0
VHP809 (VHP809Q) /CSM/VH/VHP8-A/VHP809Q.Seq.d/                       1072   0.0
SFG531 (SFG531Q) /CSM/SF/SFG5-B/SFG531Q.Seq.d/                       1070   0.0
VHG722 (VHG722Q) /CSM/VH/VHG7-A/VHG722Q.Seq.d/                       1068   0.0
VHF430 (VHF430Q) /CSM/VH/VHF4-B/VHF430Q.Seq.d/                       1047   0.0
AHL506 (AHL506Q) /CSM/AH/AHL5-A/AHL506Q.Seq.d/                       1043   0.0
SFK676 (SFK676Q) /CSM/SF/SFK6-D/SFK676Q.Seq.d/                       1041   0.0
VFO504 (VFO504Q) /CSM/VF/VFO5-A/VFO504Q.Seq.d/                       1037   0.0
own update 2003.10.31
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AJ446310|AJ446310.1 Gallus gallus EST, clone library riken1, clone 13e11r1.    46  1e-15  5
BQ861827|BQ861827.1 QGC19L03.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC19L03, mRNA sequence.    54  1e-05  2
BU916411|BU916411.1 AGENCOURT_10496997 NICHD XGC OO1 Xenopus laevis cDNA clone IMAGE:6643312 5', mRNA sequence.    40  2e-04  3
Z36087|Z36087.1 S.cerevisiae chromosome II reading frame ORF YBR218c.    44  2e-04  3
U35647|U35647.1 Saccharomyces cerevisiae pyruvate carboxylase 2 (PYC2) gene, complete cds.    44  3e-04  3
Z36077|Z36077.1 S.cerevisiae chromosome II reading frame ORF YBR208c.    44  3e-04  4
M64926|M64926.1 Yeast urea amidolyase (DUR1.2) gene, complete cds.    44  3e-04  4
E05467|E05467.1 DNA sequence encoding Saccharomyces cerevisiae urea amidolyase.    44  3e-04  4
X59890|X59890.1 S.cerivisiae PYC2 gene for pyruvate carboxylase.    44  4e-04  3
X14608|X14608.1 Human mRNA for propionyl-CoA carboxylase alpha-chain (EC 6.4.1.3).    40  5e-04  5
dna update 2003. 7.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KE6) RecName: Full=Methylcrotonoyl-CoA carboxylase subunit a...   420   e-116
BC125958_1(BC125958|pid:none) Danio rerio zgc:154106, mRNA (cDNA...   263   7e-69
BX005105_1(BX005105|pid:none) Zebrafish DNA sequence from clone ...   263   7e-69
BC021382_1(BC021382|pid:none) Mus musculus methylcrotonoyl-Coenz...   262   2e-68
(Q99MR8) RecName: Full=Methylcrotonoyl-CoA carboxylase subunit a...   262   2e-68
AJ720239_1(AJ720239|pid:none) Gallus gallus mRNA for hypothetica...   261   3e-68
(Q96RQ3) RecName: Full=Methylcrotonoyl-CoA carboxylase subunit a...   261   5e-68
AF310339_1(AF310339|pid:none) Homo sapiens 3-methylcrotonyl-CoA ...   261   5e-68
(Q5I0C3) RecName: Full=Methylcrotonoyl-CoA carboxylase subunit a...   259   1e-67
AB097824_1(AB097824|pid:none) Pagrus major MCCC1 mRNA for methyl...   258   2e-67
protein update 2009. 4.14
PSORT 

 psg: 0.61  gvh: 0.34  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for FC-BI24 is cyt
5' end seq. ID FC-BI24F
5' end seq. 
>FC-BI24F.Seq
CAAAAATGTTTAGTTTAGGAAAATTGGTTAAAAAAGATGCTTCTTTTTATAGATATATAA
CAAATGTTAATAAAGATTTAAAAATTAAACCAATTACAAAGATATTAATTGCAAATAGAG
GTGAAATTGCATGTCGTGTAATGAGAACAGCAAAATCAAAAGGTGTAAAAACCGTAGCAG
TTTATAGTGAAGCAGATAAGAATTCATTACATGTTTCAATGGCAGATGAGAGTTATTTAA
TTGGACCAGCAGCAGCCAAAGAGAGTTATTTATGTGGAAATAAGATCATAGATGTAGCAA
AGAGATCTGGAGCACAAGCAATTCATCCAGGTTATGGTTTCTTATCAGAGAATTCAGATT
TTGCTGATCTCTGTGAGAGAGAAGGTATCATTTTCATTGGACCACCATCAGATGCAATCA
AAGCAATGGGTAGCAAAAGTGCCTCAAAGGATATTATGATCAAAGCTGGCGTACCAACCA
TCCCAGGTTACCACGGTGAAGATCAGTCAATGAGTGTGTTGAAGAGTGAGGCTGCAAAGA
TTGGCTATCCAGTATTGATTAAAGCTGTTATGGGTGGTGGTGGTAAAGGTATGAGAATCG
TTGAGAGAGAGGAGGATTTAGAGGACGGTGTTGAGTCCTCAAAGAGAGAG----------
Length of 5' end seq. 650
3' end seq. ID FC-BI24Z
3' end seq. 
>FC-BI24Z.Seq
----------AAAAAAACAAGTTAAATTCAATCAAAAAGATAATAAAGTTGTTGTTAATG
TTGAATTCATTGGTGGTGGTGGTGCTGCTGCTAATGGTAAACATAACTTTAAAGTAACTT
TAGATAATGGTAATGTCGTTGAAGTTTTAGATGCAAAATTAAATCAAAATAATGAAACTA
TTAGTGCTCATGTAAATGGTAGATTCTATAATAACATTAAATCCGTCATTGTAAAGGATA
CTTTAACAATCTTTAATGAAGGTCAACAATACCAATTGGATATTCCTCAAGATGTTAAAC
CAAAAGGTGCTGATGGTGTATTGGGTTCTTTAGTTTCACCAATGCCTGGAAAAATCACTA
AAGTTATGGTAAATGTTGGTGACATGGTTAAAAAGGGTCAACCAATCTTACTCATGGAAG
CAATGAAAATGGAACATACTATTCGTTCTCCAATCGATGGTAAAAATGAATCATTACCTT
ATAATGTTAATGAAATCGTTGAGGATAAGAAAACTTTGGCTGTTATTGTTTAAAAAATAA
AAAAGAAATTAAAAAAAAAAAATGAAAAAATGGGAAAGTGGAAAATAAAATAAAAAATAA
AAAATAAAAAAAAAAAATGTTTAAAAAAAAAAAATAA
Length of 3' end seq. 627
Connected seq. ID FC-BI24P
Connected seq. 
>FC-BI24P.Seq
CAAAAATGTTTAGTTTAGGAAAATTGGTTAAAAAAGATGCTTCTTTTTATAGATATATAA
CAAATGTTAATAAAGATTTAAAAATTAAACCAATTACAAAGATATTAATTGCAAATAGAG
GTGAAATTGCATGTCGTGTAATGAGAACAGCAAAATCAAAAGGTGTAAAAACCGTAGCAG
TTTATAGTGAAGCAGATAAGAATTCATTACATGTTTCAATGGCAGATGAGAGTTATTTAA
TTGGACCAGCAGCAGCCAAAGAGAGTTATTTATGTGGAAATAAGATCATAGATGTAGCAA
AGAGATCTGGAGCACAAGCAATTCATCCAGGTTATGGTTTCTTATCAGAGAATTCAGATT
TTGCTGATCTCTGTGAGAGAGAAGGTATCATTTTCATTGGACCACCATCAGATGCAATCA
AAGCAATGGGTAGCAAAAGTGCCTCAAAGGATATTATGATCAAAGCTGGCGTACCAACCA
TCCCAGGTTACCACGGTGAAGATCAGTCAATGAGTGTGTTGAAGAGTGAGGCTGCAAAGA
TTGGCTATCCAGTATTGATTAAAGCTGTTATGGGTGGTGGTGGTAAAGGTATGAGAATCG
TTGAGAGAGAGGAGGATTTAGAGGACGGTGTTGAGTCCTCAAAGAGAGAG----------
AAAAAAACAAGTTAAATTCAATCAAAAAGATAATAAAGTTGTTGTTAATGTTGAATTCAT
TGGTGGTGGTGGTGCTGCTGCTAATGGTAAACATAACTTTAAAGTAACTTTAGATAATGG
TAATGTCGTTGAAGTTTTAGATGCAAAATTAAATCAAAATAATGAAACTATTAGTGCTCA
TGTAAATGGTAGATTCTATAATAACATTAAATCCGTCATTGTAAAGGATACTTTAACAAT
CTTTAATGAAGGTCAACAATACCAATTGGATATTCCTCAAGATGTTAAACCAAAAGGTGC
TGATGGTGTATTGGGTTCTTTAGTTTCACCAATGCCTGGAAAAATCACTAAAGTTATGGT
AAATGTTGGTGACATGGTTAAAAAGGGTCAACCAATCTTACTCATGGAAGCAATGAAAAT
GGAACATACTATTCGTTCTCCAATCGATGGTAAAAATGAATCATTACCTTATAATGTTAA
TGAAATCGTTGAGGATAAGAAAACTTTGGCTGTTATTGTTTAAAAAATAAAAAAGAAATT
AAAAAAAAAAAATGAAAAAATGGGAAAGTGGAAAATAAAATAAAAAATAAAAAATAAAAA
AAAAAAATGTTTAAAAAAAAAAAATAA
Length of connected seq. 1277
Full length Seq ID -
Full length Seq. -
Length of full length seq. -