>FC-BI18 (FC-BI18Q) /CSM/FC/FC-BI/FC-BI18Q.Seq.d/
XXXXXXXXXXATCCAGACTATTTCCAAACCATTCCATATCTTTTAAATCTTACAAGCATT
AAAAGTGGTGCTCCAGCCTATCTTAGCAGACCAAGATTAAAGGGTATCGATGTTGGTTAT
TATTATAAAGCTGGTATCACCGATTTAATCAATGATGATGAAGATCTCGACGTTTTCGCC
GATTATGAACCACGTTCTGGTAAAGCTATTCACGGTCGTTACTCACTTCAAGTAAATACC
TACATTCAAGGTTCTGATGGAACTAACTCTACTCTCTACAATAAATACTCTGCTTTCCGT
TCTGATGTTGTTCATCCAATGTTTTGGGGTGTCAATATCATCGCAGCCACTCAAGAACAA
ATTGATATCCTTACCAAAGCCTATAAAGTTGATTCCTTCCGTTATGCCATCACTGTTATT
TTAATTGTTGTTGGTGGTTTCTTATCTTTAATTTCTGGTGGTCTCTTTGTACTTGATAAA
ATAATCGATTTGTAAAAAAAAAAATTAATATATTAATAATAAATTCTGTAATTATATAAT
TTTAAAAATGGGT

---PDYFQTIPYLLNLTSIKSGAPAYLSRPRLKGIDVGYYYKAGITDLINDDEDLDVFAD
YEPRSGKAIHGRYSLQVNTYIQGSDGTNSTLYNKYSAFRSDVVHPMFWGVNIIAATQEQI
DILTKAYKVDSFRYAITVILIVVGGFLSLISGGLFVLDKIIDL*kkkliy***il*lynf
kng

Frame A:
---srlfpnhsisfksykh*kwcssls*qtkikgyrcwlll*swyhrfnq***rsrrfrr
l*ttfw*sysrslltsskylhsrf*wn*lyslq*ilcfpf*ccssnvlgcqyhrshsrtn
*ypyqsl*s*flplchhcyfnccwwflifnfwwslct**nnrfvkkkiniliinsvii*f
*kw


Frame B:
---PDYFQTIPYLLNLTSIKSGAPAYLSRPRLKGIDVGYYYKAGITDLINDDEDLDVFAD
YEPRSGKAIHGRYSLQVNTYIQGSDGTNSTLYNKYSAFRSDVVHPMFWGVNIIAATQEQI
DILTKAYKVDSFRYAITVILIVVGGFLSLISGGLFVLDKIIDL*kkkliy***il*lynf
kng


Frame C:
---qtiskpfhif*ilqalkvvlqpiladqd*rvsmlviiiklvspi*smmmkistfspi
mnhvlvklftvvthfk*iptfkvlmeltllstintllsvlmlfiqcfgvsissqplknkl
islpkpiklipsvmpsllf*lllvvsyl*flvvslylik*sickkkn*yinnkfcnyiil
kmg

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BI18 (FC-BI18Q) /CSM/FC/FC-BI/FC-BI18Q.Seq.d/                     1011   0.0
SSD382 (SSD382Q) /CSM/SS/SSD3-D/SSD382Q.Seq.d/                       1001   0.0
FC-BK09 (FC-BK09Q) /CSM/FC/FC-BK/FC-BK09Q.Seq.d/                      995   0.0
FC-475 (FC-475Q) /CSM/CG/CG-FC/FC-475Q.Seq.d/                         995   0.0
SHK633 (SHK633Q) /CSM/SH/SHK6-B/SHK633Q.Seq.d/                        942   0.0
FC-IC0568 (FC-IC0568Q) /CSM/FC-IC/FC-IC0568Q.Seq.d/                   912   0.0
VHC696 (VHC696Q) /CSM/VH/VHC6-D/VHC696Q.Seq.d/                        910   0.0
VHN770 (VHN770Q) /CSM/VH/VHN7-C/VHN770Q.Seq.d/                        906   0.0
VHC310 (VHC310Q) /CSM/VH/VHC3-A/VHC310Q.Seq.d/                        902   0.0
VHH864 (VHH864Q) /CSM/VH/VHH8-C/VHH864Q.Seq.d/                        898   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF238324|AF238324.1 Dictyostelium discoideum lysosomal integral membrane protein II (lmpB) mRNA, complete cds.   957  0.0  1
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    36  0.085  6
AZ186439|AZ186439.1 SP_1006_B2_G05_T7A Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=1006 Col=10 Row=N, genomic survey sequence.    40  0.10  2
AL138692|AL138692.26 Human DNA sequence from clone RP11-321B6 on chromosome 13.    48  0.11  1
BZ607651|BZ607651.1 WHABC43TF Human MCF7 breast cancer cell line library (MCF7_1) Homo sapiens genomic clone MCF7_1-7H13, DNA sequence.    48  0.11  1
AC090605|AC090605.7 Homo sapiens chromosome 15, clone RP11-261P5, complete sequence.    48  0.17  3
AB035878|AB035878.1 Ceratovacuna longifila mitochondrial genes for small subunit rRNA, tRNA-Val, large subunit rRNA, partial and complete sequences.    44  0.19  2
AC007906|AC007906.8 Homo sapiens chromosome 16 clone RP11-295M3, complete sequence.    42  0.28  2
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    42  0.34  6
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    34  0.37  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9BKJ9) RecName: Full=Lysosome membrane protein 2-B; AltName: F...   281   8e-75
BC044516_1(BC044516|pid:none) Danio rerio scavenger receptor cla...    40   0.030
AJ719746_1(AJ719746|pid:none) Gallus gallus mRNA for hypothetica...    39   0.066
DQ323177_1(DQ323177|pid:none) Gallus gallus fatty acid transloca...    39   0.066
DQ914655_1(DQ914655|pid:none) Salmo salar scavenger receptor cla...    38   0.15
(P27615) RecName: Full=Lysosome membrane protein 2; AltName: Ful...    38   0.19
BC045028_1(BC045028|pid:none) Xenopus laevis CD36 antigen (colla...    37   0.43
DQ307168_1(DQ307168|pid:none) Glossina morsitans morsitans clone...    36   0.73
(Q55FQ9) RecName: Full=Lysosome membrane protein 2-C; AltName: F...    35   0.96
DQ893535_1(DQ893535|pid:none) Synthetic construct clone IMAGE:10...    35   0.96

 psg: 0.75  gvh: 0.43  alm: 0.20  top: 0.40  tms: 0.07  mit: 0.29  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: nuclear
	 20.0 %: vesicles of secretory system
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for FC-BI18 is nuc

>FC-BI18Z.Seq
----------ATCCAGACTATTTCCAAACCATTCCATATCTTTTAAATCTTACAAGCATT
AAAAGTGGTGCTCCAGCCTATCTTAGCAGACCAAGATTAAAGGGTATCGATGTTGGTTAT
TATTATAAAGCTGGTATCACCGATTTAATCAATGATGATGAAGATCTCGACGTTTTCGCC
GATTATGAACCACGTTCTGGTAAAGCTATTCACGGTCGTTACTCACTTCAAGTAAATACC
TACATTCAAGGTTCTGATGGAACTAACTCTACTCTCTACAATAAATACTCTGCTTTCCGT
TCTGATGTTGTTCATCCAATGTTTTGGGGTGTCAATATCATCGCAGCCACTCAAGAACAA
ATTGATATCCTTACCAAAGCCTATAAAGTTGATTCCTTCCGTTATGCCATCACTGTTATT
TTAATTGTTGTTGGTGGTTTCTTATCTTTAATTTCTGGTGGTCTCTTTGTACTTGATAAA
ATAATCGATTTGTAAAAAAAAAAATTAATATATTAATAATAAATTCTGTAATTATATAAT
TTTAAAAATGGGT