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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BI16
Library FC
(Link to library)
Clone ID FC-BI16
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16228-1
Original site URL
Representative seq. ID FC-BI16E
(Link to Original site)
Representative DNA sequence 
>FC-BI16 (FC-BI16Q) /CSM/FC/FC-BI/FC-BI16Q.Seq.d/
AAATAATTTTATTTTTAATTTTAATTATTTTTTTAATTAATGATTGCCAAGGTTTAAAAA
AAGGTACAACCTTTGGATCAGATCCAAATTCAGATAGTGCGAAGTGTAATGATATCAAAG
ATTTAAATGTTGCTTGGTATTATAATTGGGATAAAAAACCAACATGTAATGCTGGAATTC
CAGGTGTTGAATTTATTCCAACTATTTGGGGCAGTGGTTCATTACCAATTGGTAATTTAC
CAAATGGTTCCGAATGGTTAATTGGATTCAACGAGCCAAATTACAATAATCAAGCAAATT
TAACACCAAAGCAAGCAGCTGATTTATGGCCACAATTAGAAGCCACTGGCAGAAAATTAG
TTGCTCCAGGTGTCGCTGATTGTGGTCAACAGTTAGGTGGTGGCTGTACTTATTCAACAT
TGGATTGGTATAGCCAGTTCTTGGGAAATTGTAGCAAATGTCGTATTGATGCCGTATCAC
TCCATCTCTACTATTGCAATGCCGATGACATGATGAATAAAATCAATAGCCTTTACCAAT
TAACAAAGAAACCAGTTTGGTTAACTGAATTTGCTTGTAACAGTCCCGCCAGTAAAGAAA
GTGTTGTAACATTTGCTCAAGCTTTATTACCAAGATTAGAAAATTCAACCCAAGTTGGTC
GTTACAGCTGGTTCATTCCATATTGTGGAGGTTGTGGTGCTGGTGATTTGTTATATAGTT
CATTATATAATGATCAATCAGGTAATAAAAATTTAACACCAATTGGTCAATATTATTCTA
ATTTCCAAAGTAATAATGGTGGTGGTAATGGTAATGGTAATGGTAATGGTAGCGATAGTG
GTAGTGATGAAACTGGTTCAAGTTCAAATTTAATCAAATCAACTTTAACTTTTACTTTAA
TTTTAATTTTAATTTTATTATTATTTTAAAATTAATTGTATAATAAAAAAAAAAAAAAAA
ATTATTTATTTATTTATTCAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 3. 3
Translated Amino Acid sequence 
IILFLILIIFLINDCQGLKKGTTFGSDPNSDSAKCNDIKDLNVAWYYNWDKKPTCNAGIP
GVEFIPTIWGSGSLPIGNLPNGSEWLIGFNEPNYNNQANLTPKQAADLWPQLEATGRKLV
APGVADCGQQLGGGCTYSTLDWYSQFLGNCSKCRIDAVSLHLYYCNADDMMNKINSLYQL
TKKPVWLTEFACNSPASKESVVTFAQALLPRLENSTQVGRYSWFIPYCGGCGAGDLLYSS
LYNDQSGNKNLTPIGQYYSNFQSNNGGGNGNGNGNGSDSGSDETGSSSNLIKSTLTFTLI
LILILLLF*n*lynkkkkknylfiysikkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
k*fyf*f*lff*lmiakv*kkvqpldqiqiqivrsvmiski*mllgiiigiknqhvmlef
qvlnlfqlfgavvhyqlviyqmvpng*ldstsqitiikqi*hqskqliyghn*kplaen*
llqvslivvns*vvavliqhwigiassweivanvvlmpyhsistiampmt**iksiaftn
*qrnqfg*lnllvtvppvkkvl*hllklyyqd*kiqpklvvtagsfhivevvvlvicyiv
hyiminqviki*hqlvniiliskvimvvvmvmvmvmvaivvvmklvqvqi*snql*lll*
f*f*fyyyfkinciikkkkkiiylfiqskkkkkkkkkk


Frame B:
nnfifnfnyffn**lprfkkrynlwirskfr*cev**yqrfkcclvl*lg*ktnm*cwns
rc*iysnylgqwfitnw*ftkwfrmvnwiqraklq*sskfntkass*fmatirshwqkis
csrcr*lwstvrwwlylfniglv*pvlgkl*qmsy*critpslllqcr*hde*nq*plpi
nketslvn*icl*qsrq*rkccnicssfitkirkfnpswslqlvhsilwrlwcw*fvi*f
ii**sir**kfntnwsilf*fpk**www*w*w*w*w*r*w***nwfkfkfnqinfnfyfn
fnfnfiiilkliv**kkkkklfiylfnqkkkkkkkkk


Frame C:
IILFLILIIFLINDCQGLKKGTTFGSDPNSDSAKCNDIKDLNVAWYYNWDKKPTCNAGIP
GVEFIPTIWGSGSLPIGNLPNGSEWLIGFNEPNYNNQANLTPKQAADLWPQLEATGRKLV
APGVADCGQQLGGGCTYSTLDWYSQFLGNCSKCRIDAVSLHLYYCNADDMMNKINSLYQL
TKKPVWLTEFACNSPASKESVVTFAQALLPRLENSTQVGRYSWFIPYCGGCGAGDLLYSS
LYNDQSGNKNLTPIGQYYSNFQSNNGGGNGNGNGNGSDSGSDETGSSSNLIKSTLTFTLI
LILILLLF*n*lynkkkkknylfiysikkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BI16 (FC-BI16Q) /CSM/FC/FC-BI/FC-BI16Q.Seq.d/                     1445   0.0
VSJ175 (VSJ175Q) /CSM/VS/VSJ1-D/VSJ175Q.Seq.d/                        973   0.0
SSM263 (SSM263Q) /CSM/SS/SSM2-C/SSM263Q.Seq.d/                        918   0.0
SSE383 (SSE383Q) /CSM/SS/SSE3-D/SSE383Q.Seq.d/                         42   0.016
VHG539 (VHG539Q) /CSM/VH/VHG5-B/VHG539Q.Seq.d/                         40   0.065
SSI756 (SSI756Q) /CSM/SS/SSI7-C/SSI756Q.Seq.d/                         40   0.065
CFD601 (CFD601Q) /CSM/CF/CFD6-A/CFD601Q.Seq.d/                         40   0.065
AHG595 (AHG595Q) /CSM/AH/AHG5-D/AHG595Q.Seq.d/                         40   0.065
AHC734 (AHC734Q) /CSM/AH/AHC7-B/AHC734Q.Seq.d/                         40   0.065
AFE735 (AFE735Q) /CSM/AF/AFE7-B/AFE735Q.Seq.d/                         40   0.065
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   6e-05  10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   2e-04  13
BX131044|BX131044.1 Danio rerio genomic clone DKEY-94H20, genomic survey sequence.    38   6e-04  3
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.    34   9e-04  8
AE014852|AE014852.2 Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete sequence.    38   9e-04  11
AC140949|AC140949.1 Pan troglodytes BAC clone RP43-168N2 from 7, complete sequence.    44   0.002  6
AL031744|AL031744.8 Plasmodium falciparum DNA from MAL1P1.         38   0.003  6
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    38   0.004  10
AC027501|AC027501.3 Homo sapiens chromosome 5 clone RP11-719A13 map 5, WORKING DRAFT SEQUENCE, 29 unordered pieces.    38   0.005  8
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    38   0.005  8
dna update 2003.12.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM746676_3278(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...   133   9e-30
CP000282_2919(CP000282|pid:none) Saccharophagus degradans 2-40, ...   110   1e-22
CP001614_3600(CP001614|pid:none) Teredinibacter turnerae T7901, ...   105   2e-21
CP000934_2699(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...   101   5e-20
AM920437_724(AM920437|pid:none) Penicillium chrysogenum Wisconsi...    99   3e-19
CP000058_2107(CP000058|pid:none) Pseudomonas syringae pv. phaseo...    98   5e-19
CP000282_1443(CP000282|pid:none) Saccharophagus degradans 2-40, ...    96   2e-18
AE016853_3097(AE016853|pid:none) Pseudomonas syringae pv. tomato...    93   2e-17
CU638743_513(CU638743|pid:none) Podospora anserina genomic DNA c...    88   4e-16
CP000317_20(CP000317|pid:none) Polaromonas sp. JS666 plasmid 1, ...    88   4e-16
protein update 2009. 7. 3
PSORT 

 psg: 1.01  gvh: 0.72  alm: 0.23  top: 0.47  tms: 0.07  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 1.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for FC-BI16 is pla
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-BI16E
Full length Seq. 
>FC-BI16E.Seq
AAATAATTTTATTTTTAATTTTAATTATTTTTTTAATTAATGATTGCCAAGGTTTAAAAA
AAGGTACAACCTTTGGATCAGATCCAAATTCAGATAGTGCGAAGTGTAATGATATCAAAG
ATTTAAATGTTGCTTGGTATTATAATTGGGATAAAAAACCAACATGTAATGCTGGAATTC
CAGGTGTTGAATTTATTCCAACTATTTGGGGCAGTGGTTCATTACCAATTGGTAATTTAC
CAAATGGTTCCGAATGGTTAATTGGATTCAACGAGCCAAATTACAATAATCAAGCAAATT
TAACACCAAAGCAAGCAGCTGATTTATGGCCACAATTAGAAGCCACTGGCAGAAAATTAG
TTGCTCCAGGTGTCGCTGATTGTGGTCAACAGTTAGGTGGTGGCTGTACTTATTCAACAT
TGGATTGGTATAGCCAGTTCTTGGGAAATTGTAGCAAATGTCGTATTGATGCCGTATCAC
TCCATCTCTACTATTGCAATGCCGATGACATGATGAATAAAATCAATAGCCTTTACCAAT
TAACAAAGAAACCAGTTTGGTTAACTGAATTTGCTTGTAACAGTCCCGCCAGTAAAGAAA
GTGTTGTAACATTTGCTCAAGCTTTATTACCAAGATTAGAAAATTCAACCCAAGTTGGTC
GTTACAGCTGGTTCATTCCATATTGTGGAGGTTGTGGTGCTGGTGATTTGTTATATAGTT
CATTATATAATGATCAATCAGGTAATAAAAATTTAACACCAATTGGTCAATATTATTCTA
ATTTCCAAAGTAATAATGGTGGTGGTAATGGTAATGGTAATGGTAATGGTAGCGATAGTG
GTAGTGATGAAACTGGTTCAAGTTCAAATTTAATCAAATCAACTTTAACTTTTACTTTAA
TTTTAATTTTAATTTTATTATTATTTTAAAATTAATTGTATAATAAAAAAAAAAAAAAAA
ATTATTTATTTATTTATTCAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 1014