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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BI04
Library FC
(Link to library)
Clone ID FC-BI04
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16011-1
Original site URL
Representative seq. ID FC-BI04P
(Link to Original site)
Representative DNA sequence 
>FC-BI04 (FC-BI04Q) /CSM/FC/FC-BI/FC-BI04Q.Seq.d/
ATTCTTCAATCCAGAGATTGCCTCCTCCGACTACCTCACCCCATTACCAAAGGTTGTCGA
CGATACCATTCAATCCTGTCCAATCGATTGTCGTCGTGGTCTCTACAAGAATATTTTCTT
ATCTGGTGGTTCAACCATGTTTAAAGATTTTGGTAAACGTCTTCAACGTGATGTCAAACG
TTCTGTCGATTACCGTATCAAACGTTCCGAAGAATTATCTGGTGGTAAAATTAAAGCTGT
CCCATTGGCCGTCAACGTTATCTCTCACAATATGCAACGTTATGCCGTATGGTTTGGTGG
TTCTATGTTGGCTTCAACTCCAGAGTTTTACAATGTCTGTCATACCAAAGCTCAATATGA
TGAAATCGGTCCATCCATTTGCAGATTTAACACTGTCATTGGTGGTATCAATTAAATAGG
TTTTTCTATAAATAATCAAAAAAATATTTTTCCGATTGAAATAATTAATACTCTAACTTC
ATTATTAGTTTATTATTACCTATCAAAAAAAAAAXXXXXXXXXXAACAAATAAATGAATA
TTTTTTCCCAATAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997.12.11
Translated Amino Acid sequence 
ffnpeiassdyltplpkvvddtiqscpidcrrglykniflsggstmfkdfgkrlqrdvkr
svdyrikrseelsggkikavplavnvishnmqryavwfggsmlastpefynvchtkaqyd
eigpsicrfntviggin*IGFSINNQKNIFPIEIINTLTSLLVYYYLSKKK---

---QINEYFFPII*kkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ilqsrdcllrlphpitkgcrryhsilsnrlsswslqeyfliwwfnhv*rfw*tsst*cqt
fcrlpyqtfrriiww*n*scpigrqrylsqyatlcrmvwwfyvgfnsrvlqclsyqssi*
*nrsihlqi*hchwwyqlnrffyk*skkyfsd*nn*ysnfiislllpikkk---

---nk*mnifsq*fkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk

Frame B:
ffnpeiassdyltplpkvvddtiqscpidcrrglykniflsggstmfkdfgkrlqrdvkr
svdyrikrseelsggkikavplavnvishnmqryavwfggsmlastpefynvchtkaqyd
eigpsicrfntviggin*IGFSINNQKNIFPIEIINTLTSLLVYYYLSKKK---

---tnk*iffpnnlkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk

Frame C:
ssiqrlpppttsphyqrlstipfnpvqsivvvvstrifsylvvqpclkilvnvfnvmsnv
lsitvsnvpknylvvklklshwpstlslticnvmpyglvvlcwlqlqsftmsvipklnmm
ksvhpfadltlslvvsik*vfl*iikkiffrlk*lil*lhy*fiityqkk---

---QINEYFFPII*kkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BI04 (FC-BI04Q) /CSM/FC/FC-BI/FC-BI04Q.Seq.d/                      957   0.0
VSF457 (VSF457Q) /CSM/VS/VSF4-C/VSF457Q.Seq.d/                        900   0.0
SFB660 (SFB660Q) /CSM/SF/SFB6-C/SFB660Q.Seq.d/                        884   0.0
AFI538 (AFI538Q) /CSM/AF/AFI5-B/AFI538Q.Seq.d/                        880   0.0
AFI845 (AFI845Q) /CSM/AF/AFI8-B/AFI845Q.Seq.d/                        876   0.0
VFD509 (VFD509Q) /CSM/VF/VFD5-A/VFD509Q.Seq.d/                        872   0.0
AFF125 (AFF125Q) /CSM/AF/AFF1-B/AFF125Q.Seq.d/                        852   0.0
AFH594 (AFH594Q) /CSM/AF/AFH5-D/AFH594Q.Seq.d/                        850   0.0
AFH109 (AFH109Q) /CSM/AF/AFH1-A/AFH109Q.Seq.d/                        850   0.0
AFD847 (AFD847Q) /CSM/AF/AFD8-B/AFD847Q.Seq.d/                        850   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

Z46418|Z46418.1 Dictyostelium discoideum mRNA for actin-like protein.   850  0.0  2
AI976957|AI976957.1 EST271474 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAB85 5' end, mRNA sequence.    64  2e-14  2
AV997173|AV997173.1 Ciona intestinalis cDNA, clone:citb19m09, 5' end, single read.    58  2e-11  2
AV885348|AV885348.1 Ciona intestinalis cDNA, clone:rcitb19m09, 3' end, single read.    58  2e-11  2
AV965979|AV965979.1 Ciona intestinalis cDNA, clone:cilv21a10, 5' end, single read.    50  3e-09  2
BW196096|BW196096.1 Ciona intestinalis cDNA, clone:cicl038f18, 5' end, single read.    50  3e-09  2
AV862112|AV862112.1 Ciona intestinalis cDNA, clone:rcieg32c20, 3' end, single read.    50  4e-09  2
BW218081|BW218081.1 Ciona intestinalis cDNA, clone:cieg090b21, 5' end, single read.    50  4e-09  2
BW040290|BW040290.1 Ciona intestinalis cDNA, clone:cibd043b07, 5' end, single read.    50  4e-09  2
BW039288|BW039288.1 Ciona intestinalis cDNA, clone:cibd040c10, 5' end, single read.    50  4e-09  2
dna update 2003. 7.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY577012_1(AY577012|pid:none) Danio rerio clone RZ152A2C04 ARP3 ...   204   2e-51
BC064225_1(BC064225|pid:none) Xenopus tropicalis ARP3 actin-rela...   204   2e-51
AB292042_1(AB292042|pid:none) Rattus norvegicus Arp3 mRNA for ac...   203   4e-51
AB292043_1(AB292043|pid:none) Rattus norvegicus Arp3 mRNA for ac...   203   4e-51
(Q90WD0) RecName: Full=Actin-related protein 3; AltName: Full=Ac...   203   4e-51
AK300030_1(AK300030|pid:none) Homo sapiens cDNA FLJ51082 complet...   203   4e-51
(Q4V7C7) RecName: Full=Actin-related protein 3; AltName: Full=Ac...   203   4e-51
AK302152_1(AK302152|pid:none) Homo sapiens cDNA FLJ52434 complet...   203   4e-51
DQ985463_1(DQ985463|pid:none) Suberites domuncula actin related ...   201   1e-50
AK159668_1(AK159668|pid:none) Mus musculus osteoclast-like cell ...   201   2e-50
protein update 2009. 4.14
PSORT 

 psg: 0.78  gvh: 0.32  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for FC-BI04 is cyt
5' end seq. ID FC-BI04F
5' end seq. 
>FC-BI04F.Seq
ATTCTTCAATCCAGAGATTGCCTCCTCCGACTACCTCACCCCATTACCAAAGGTTGTCGA
CGATACCATTCAATCCTGTCCAATCGATTGTCGTCGTGGTCTCTACAAGAATATTTTCTT
ATCTGGTGGTTCAACCATGTTTAAAGATTTTGGTAAACGTCTTCAACGTGATGTCAAACG
TTCTGTCGATTACCGTATCAAACGTTCCGAAGAATTATCTGGTGGTAAAATTAAAGCTGT
CCCATTGGCCGTCAACGTTATCTCTCACAATATGCAACGTTATGCCGTATGGTTTGGTGG
TTCTATGTTGGCTTCAACTCCAGAGTTTTACAATGTCTGTCATACCAAAGCTCAATATGA
TGAAATCGGTCCATCCATTTGCAGATTTAACACTGTCATTGGTGGTATCAATTAAATAGG
TTTTTCTATAAATAATCAAAAAAATATTTTTCCGATTGAAATAATTAATACTCTAACTTC
ATTATTAGTTTATTATTACCTATCAAAAAAAAAA----------
Length of 5' end seq. 514
3' end seq. ID FC-BI04Z
3' end seq. 
>FC-BI04Z.Seq
----------AACAAATAAATGAATATTTTTTCCCAATAATTTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 131
Connected seq. ID FC-BI04P
Connected seq. 
>FC-BI04P.Seq
ATTCTTCAATCCAGAGATTGCCTCCTCCGACTACCTCACCCCATTACCAAAGGTTGTCGA
CGATACCATTCAATCCTGTCCAATCGATTGTCGTCGTGGTCTCTACAAGAATATTTTCTT
ATCTGGTGGTTCAACCATGTTTAAAGATTTTGGTAAACGTCTTCAACGTGATGTCAAACG
TTCTGTCGATTACCGTATCAAACGTTCCGAAGAATTATCTGGTGGTAAAATTAAAGCTGT
CCCATTGGCCGTCAACGTTATCTCTCACAATATGCAACGTTATGCCGTATGGTTTGGTGG
TTCTATGTTGGCTTCAACTCCAGAGTTTTACAATGTCTGTCATACCAAAGCTCAATATGA
TGAAATCGGTCCATCCATTTGCAGATTTAACACTGTCATTGGTGGTATCAATTAAATAGG
TTTTTCTATAAATAATCAAAAAAATATTTTTCCGATTGAAATAATTAATACTCTAACTTC
ATTATTAGTTTATTATTACCTATCAAAAAAAAAA----------AACAAATAAATGAATA
TTTTTTCCCAATAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 645
Full length Seq ID -
Full length Seq. -
Length of full length seq. -