>FC-BI02 (FC-BI02Q) /CSM/FC/FC-BI/FC-BI02Q.Seq.d/
CGGACGCGTGGGCAAGTATGGGTTTATTAACAGTTTTAAAAAAATTAAAACAAAAAGAAA
AGGAATTAAGAATTTTAATGCTTGGTTTAGATAATGCTGGTAAAACAACTATATTAAAAA
AATTTAATGGGGAGGATATTTCAACTATTAGTCCAACATTAGGTTTCAATATTCAAACTT
TAATGTATAAAGAATATAAATTAAATATTTGGGATATAGGTGGTCAAAAGACTCTTAGGT
GTTATTGGAGAAATTATTATGAAGAGAATGATGCAGTAATTTGGGTTATTGATAGTTCTG
ATATAAGAAGAATTGATGATTGTAAATTTGAATTAAAAAAATTATTAGAAGAAGAGAAAT
TTGCAGGTGCATCATTTTTAGTTTTTGCAAATAAACAAGATTTAGATGGTGCAATGACAT
CAGAAGAGATTTCAAAATATTTAGATTTAGAACAATTAAATACTCATCATTGGGAGATCA
TGAAGTTGTAGTGCTGTTACAGGTTTAGGTTTAGAAGAAGGTATAGATTGGGTTGTAAAA
GATATCGTATCACGTTGTTTTGTTTTAGATTAAAATCATCAXXXXXXXXXXATTATTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

dawasmglltvlkklkqkekelrilmlgldnagkttilkkfngedistisptlgfniqtl
mykeyklniwdiggqktlrcywrnyyeendaviwvidssdirriddckfelkklleeekf
agasflvfankqdldgamtseeiskyldleqlnthhweimkl*CCYRFRFRRRYRLGCKR
YRITLFCFRLKSS---

---IIKKKKKKKKKKKKKKKKK

Frame A:
rtrgqvwvy*qf*kn*nkkkrn*ef*clv*imlvkqly*knlmgrifqllvqh*vsifkl
*ciknin*ifgi*vvkrllgvigeiimkrmmq*fgllivli*eelmivnln*kny*kkrn
lqvhhf*flqinki*mvq*hqkrfqni*i*nn*iliigrs*scsavtglgleegidwvvk
divsrcfvld*nh---

---IIKKKKKKKKKKKKKKKKK

Frame B:
grvgkygfinsfkkiktkrkgiknfnawfr*cw*nnyikki*wggyfny*snirfqysnf
nv*ri*ikylgyrwskds*vllekll*re*csnlgy**f*ykkn**l*i*ikkiirrrei
crciifsfck*trfrwcndirrdfkifrfrtikysslgdhevvvllqv*v*kkv*igl*k
isyhvvlf*ikii---

---llkkkkkkkkkkkkkkkk

Frame C:
dawasmglltvlkklkqkekelrilmlgldnagkttilkkfngedistisptlgfniqtl
mykeyklniwdiggqktlrcywrnyyeendaviwvidssdirriddckfelkklleeekf
agasflvfankqdldgamtseeiskyldleqlnthhweimkl*CCYRFRFRRRYRLGCKR
YRITLFCFRLKSS---

---y*kkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BI02 (FC-BI02Q) /CSM/FC/FC-BI/FC-BI02Q.Seq.d/                      948   0.0
VSF504 (VSF504Q) /CSM/VS/VSF5-A/VSF504Q.Seq.d/                         44   0.003
SSL154 (SSL154Q) /CSM/SS/SSL1-C/SSL154Q.Seq.d/                         44   0.003
SSL113 (SSL113Q) /CSM/SS/SSL1-A/SSL113Q.Seq.d/                         44   0.003
SSK773 (SSK773Q) /CSM/SS/SSK7-D/SSK773Q.Seq.d/                         44   0.003
SSK216 (SSK216Q) /CSM/SS/SSK2-A/SSK216Q.Seq.d/                         44   0.003
SSJ475 (SSJ475Q) /CSM/SS/SSJ4-D/SSJ475Q.Seq.d/                         44   0.003
SSI674 (SSI674Q) /CSM/SS/SSI6-D/SSI674Q.Seq.d/                         44   0.003
SSI502 (SSI502Q) /CSM/SS/SSI5-A/SSI502Q.Seq.d/                         44   0.003
SSI437 (SSI437Q) /CSM/SS/SSI4-B/SSI437Q.Seq.d/                         44   0.003

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BQ738456|BQ738456.1 pt32f03.y1 Trichinella spiralis immature L1 pAMP1 v1 Trichinella spiralis cDNA 5' similar to SW:ARL3_HUMAN P36405 ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 3. [1] ;contains element LTR3 repetitive element ;, mRNA sequence.    48  2e-08  3
BP186060|BP186060.1 Dugesia japonica cDNA, clone: 02334_HH, expressed in the head.    48  2e-07  2
AZ526850|AZ526850.1 260PbD10 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    66  6e-07  1
AI975512|AI975512.1 EST270106 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAT65 5' end, mRNA sequence.    58  2e-06  2
AL440813|AL440813.1 T3 end of clone BD0AA015A01 of library BD0AA from strain CBS 94 of  Candida tropicalis.    54  4e-06  2
AU283305|AU283305.1 Molgula tectiformis mRNA, clone:MT03B2B05R, 5' end.    44  4e-04  2
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    46  0.002  6
BP189126|BP189126.1 Dugesia japonica cDNA, clone: 06084_HH, expressed in the head.    46  0.006  2
BQ414845|BQ414845.1 GA__Ed0091G05r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0091G05r, mRNA sequence.    40  0.009  2
BG441326|BG441326.1 GA__Ea0012M23f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0012M23f, mRNA sequence.    40  0.009  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC061604_1(BC061604|pid:none) Xenopus tropicalis ADP-ribosylatio...   168   2e-45
AY891824_1(AY891824|pid:none) Synthetic construct Homo sapiens c...   168   3e-45
(P36404) RecName: Full=ADP-ribosylation factor-like protein 2;  ...   168   3e-45
(Q2TA37) RecName: Full=ADP-ribosylation factor-like protein 2;  ...   167   3e-45
BC088969_1(BC088969|pid:none) Xenopus laevis hypothetical LOC496...   167   4e-45
A48259(A48259) ADP-ribosylation factor-like 2 - human  &AF493888...   167   4e-45
(Q9D0J4) RecName: Full=ADP-ribosylation factor-like protein 2;  ...   167   7e-45
BT047616_1(BT047616|pid:none) Salmo salar clone ssal-sjb-006-099...   167   1e-44
AM502858_1(AM502858|pid:none) Hordeum vulgare subsp. vulgare mRN...   160   3e-44
AF143680_1(AF143680|pid:none) Mus musculus arf-like protein 2 (A...   165   3e-44

 psg: 0.45  gvh: 0.30  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.75  mip: 0.00
 nuc: 1.16  erl: 0.00  erm: 1.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial

>> prediction for FC-BI02 is nuc

>FC-BI02F.Seq
CGGACGCGTGGGCAAGTATGGGTTTATTAACAGTTTTAAAAAAATTAAAACAAAAAGAAA
AGGAATTAAGAATTTTAATGCTTGGTTTAGATAATGCTGGTAAAACAACTATATTAAAAA
AATTTAATGGGGAGGATATTTCAACTATTAGTCCAACATTAGGTTTCAATATTCAAACTT
TAATGTATAAAGAATATAAATTAAATATTTGGGATATAGGTGGTCAAAAGACTCTTAGGT
GTTATTGGAGAAATTATTATGAAGAGAATGATGCAGTAATTTGGGTTATTGATAGTTCTG
ATATAAGAAGAATTGATGATTGTAAATTTGAATTAAAAAAATTATTAGAAGAAGAGAAAT
TTGCAGGTGCATCATTTTTAGTTTTTGCAAATAAACAAGATTTAGATGGTGCAATGACAT
CAGAAGAGATTTCAAAATATTTAGATTTAGAACAATTAAATACTCATCATTGGGAGATCA
TGAAGTTGTAGTGCTGTTACAGGTTTAGGTTTAGAAGAAGGTATAGATTGGGTTGTAAAA
GATATCGTATCACGTTGTTTTGTTTTAGATTAAAATCATCA----------