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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BG21
Library FC
(Link to library)
Clone ID FC-BG21
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16203-1
Original site URL
Representative seq. ID FC-BG21E
(Link to Original site)
Representative DNA sequence 
>FC-BG21 (FC-BG21Q) /CSM/FC/FC-BG/FC-BG21Q.Seq.d/
GTCTTAGCGTATTATTTGGCATTTCACATGGTGTCGGTAAATTAAATACCTTCAAATCAA
TTGCCAAAGAAGATTTATCAAAAGAAATTAAAACTACTGCTACTGCTGAAAAATCAAAAG
CATACCAAGAAGGTTACGAAGCTGGTGTTAAATCAACTCAACCAAAAGCAGGAGGTGTCA
CTTATGGTAGTGAAATCGAAAAACTCATTGCTGAAACCTGTGGTACCAACCTTAAACAAC
AAAACTAAAATAAACCAACAACAGTAATATAATAATATAAATACAAATTCCACATATTTA
AAAAAATAAAACTACAAAAAAAAAAAAAAAAAAAACATGTATAAAACACAATTTTACGTG
TAATTTTATTATAAAAAAAAATAAAAAACCTATAAAATTTTAAAAC
sequence update 1997.11.28
Translated Amino Acid sequence 
LSVLFGISHGVGKLNTFKSIAKEDLSKEIKTTATAEKSKAYQEGYEAGVKSTQPKAGGVT
YGSEIEKLIAETCGTNLKQQN*nkpttvi**ykykfhifkkiklqkkkkkkhv*ntilrv
ill*kkiknl*nfk
Translated Amino Acid sequence (All Frames) 
Frame A:
vlayylafhmvsvn*ipsnqlpkkiyqkklklllllknqkhtkkvtklvlnqlnqkqevs
lmvvksknsllkpvvptlnnktkinqqq*ynnintnstylkk*nykkkkkknmyktqfyv
*fyykkk*ktykilk


Frame B:
s*riiwhftwcr*ikylqincqrrfikrn*nycyc*kiksiprrlrswc*instksrrch
lw**nrkthc*nlwyqp*ttklk*tnnsniii*iqiphi*knkttkkkkkktcikhnftc
nfiikknkkpikf*n


Frame C:
LSVLFGISHGVGKLNTFKSIAKEDLSKEIKTTATAEKSKAYQEGYEAGVKSTQPKAGGVT
YGSEIEKLIAETCGTNLKQQN*nkpttvi**ykykfhifkkiklqkkkkkkhv*ntilrv
ill*kkiknl*nfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BG21 (FC-BG21Q) /CSM/FC/FC-BG/FC-BG21Q.Seq.d/                      444   e-124
FC-226 (FC-226Q) /CSM/CG/CG-FC/FC-226Q.Seq.d/                         444   e-124
VSK142 (VSK142Q) /CSM/VS/VSK1-B/VSK142Q.Seq.d/                        428   e-119
VSH163 (VSH163Q) /CSM/VS/VSH1-C/VSH163Q.Seq.d/                        428   e-119
VSG577 (VSG577Q) /CSM/VS/VSG5-D/VSG577Q.Seq.d/                        428   e-119
VHO746 (VHO746Q) /CSM/VH/VHO7-B/VHO746Q.Seq.d/                        428   e-119
VHG162 (VHG162Q) /CSM/VH/VHG1-C/VHG162Q.Seq.d/                        428   e-119
VFA207 (VFA207Q) /CSM/VF/VFA2-A/VFA207Q.Seq.d/                        428   e-119
FC-AM13 (FC-AM13Q) /CSM/FC/FC-AM/FC-AM13Q.Seq.d/                      422   e-117
SSA638 (SSA638Q) /CSM/SS/SSA6-B/SSA638Q.Seq.d/                        414   e-115
own update 2002.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY254473|AY254473.1 Dictyostelium discoideum nucleotide exchange factor RasGEF Q (gefQ) gene, complete cds.   428   e-130  3
L04534|L04534.1 Rotavirus non-structural protein (NS35) gene, complete cds.    52   0.006  1
AB022770|AB022770.1 Human rotavirus mRNA for NSP2, complete cds.    52   0.006  1
X57944|X57944.1 Human rotavirus segment 7 gp33 gene.    52   0.006  1
AP001651|AP001651.3 Homo sapiens genomic DNA, chromosome 18q22 clone:RP11-778A8, WORKING DRAFT SEQUENCE, 9 unordered pieces.    36   0.007  8
AP003362|AP003362.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 5/9.    34   0.008  9
Z21640|Z21640.1 Bovine rotavirus (Strain RF) mRNA for non-structural protein (NSP2).    42   0.17   2
L04530|L04530.1 Rotavirus sp. non-structural protein (NS35) gene, complete cds.    42   0.17   2
AC023972|AC023972.3 Homo sapiens chromosome 18 clone RP11-778A8 map 18, WORKING DRAFT SEQUENCE, 11 unordered pieces.    36   0.31   6
AC129681|AC129681.3 Rattus norvegicus clone CH230-196I17, *** SEQUENCING IN PROGRESS ***, 71 unordered pieces.    46   0.36   1
dna update 2003.12.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM494968_122(AM494968|pid:none) Leishmania braziliensis chromoso...    32   7.0
protein update 2009. 3. 2
PSORT 

 psg: 0.93  gvh: 0.41  alm: 0.46  top: 0.63  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for FC-BG21 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-BG21E
Full length Seq. 
>FC-BG21E.Seq
GTCTTAGCGTATTATTTGGCATTTCACATGGTGTCGGTAAATTAAATACCTTCAAATCAA
TTGCCAAAGAAGATTTATCAAAAGAAATTAAAACTACTGCTACTGCTGAAAAATCAAAAG
CATACCAAGAAGGTTACGAAGCTGGTGTTAAATCAACTCAACCAAAAGCAGGAGGTGTCA
CTTATGGTAGTGAAATCGAAAAACTCATTGCTGAAACCTGTGGTACCAACCTTAAACAAC
AAAACTAAAATAAACCAACAACAGTAATATAATAATATAAATACAAATTCCACATATTTA
AAAAAATAAAACTACAAAAAAAAAAAAAAAAAAAACATGTATAAAACACAATTTTACGTG
TAATTTTATTATAAAAAAAAATAAAAAACCTATAAAATTTTAAAAC
Length of full length seq. 406