NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BG04
Library FC
(Link to library)
Clone ID FC-BG04
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15185-1
Original site URL
Representative seq. ID FC-BG04E
(Link to Original site)
Representative DNA sequence 
>FC-BG04 (FC-BG04Q) /CSM/FC/FC-BG/FC-BG04Q.Seq.d/
AATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGC
TTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTC
ATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTG
CCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAG
ATCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAAT
AAATCAGGACCAATATACACTGGTTTTAAAAAATAAATATATTTAAAATAAAAAAAA
sequence update 1997.11.28
Translated Amino Acid sequence 
MAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGC
RKVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytlvlknkyi*nkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ngqknkesrscr*iryqiwcffkkas*kdgnhptrylhlfilw*rcrqtfirwylem*rl
p*sfswwcldyvncrwchc*inyqtsqrvk*lnhlymk*nksgpiytgfkk*iylk*kk


Frame B:
MAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGC
RKVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytlvlknkyi*nkk


Frame C:
wpkeqrkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhplvsgnvtva
vkf*lvvlglcqlplvplldqlsdvses*itkpfiyeik*irtnihwf*kinifkikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI473 (VSI473Q) /CSM/VS/VSI4-D/VSI473Q.Seq.d/                        575   e-163
VSI440 (VSI440Q) /CSM/VS/VSI4-B/VSI440Q.Seq.d/                        575   e-163
VSI243 (VSI243Q) /CSM/VS/VSI2-B/VSI243Q.Seq.d/                        575   e-163
VSI222 (VSI222Q) /CSM/VS/VSI2-A/VSI222Q.Seq.d/                        575   e-163
VSH888 (VSH888Q) /CSM/VS/VSH8-D/VSH888Q.Seq.d/                        575   e-163
VSH830 (VSH830Q) /CSM/VS/VSH8-B/VSH830Q.Seq.d/                        575   e-163
VSH738 (VSH738Q) /CSM/VS/VSH7-B/VSH738Q.Seq.d/                        575   e-163
VSH330 (VSH330Q) /CSM/VS/VSH3-B/VSH330Q.Seq.d/                        575   e-163
VSG783 (VSG783Q) /CSM/VS/VSG7-D/VSG783Q.Seq.d/                        575   e-163
VSG249 (VSG249Q) /CSM/VS/VSG2-C/VSG249Q.Seq.d/                        575   e-163
own update 2004. 8. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL116011|AL116011.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84   9e-15  2
AL116009|AL116009.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84   9e-15  2
AL115603|AL115603.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84   9e-15  2
AL112069|AL112069.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84   9e-15  2
AL112083|AL112083.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84   9e-15  2
AL111042|AL111042.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84   1e-14  2
AL114982|AL114982.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    80   2e-13  2
AL110769|AL110769.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78   5e-13  2
BM027100|BM027100.1 GIT0000389 Root-induced cDNA library from Glomus intraradices Glomus intraradices cDNA, mRNA sequence.    84   1e-12  1
BI323490|BI323490.1 kt71h07.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:R37A_OSTOS O61598 60S RIBOSOMAL PROTEIN L37A. ;, mRNA sequence.    42   1e-11  4
dna update 2003.12.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UG4) RecName: Full=60S ribosomal protein L37a;  &JE0321(JE03...   184   9e-46
(O61462) RecName: Full=60S ribosomal protein L37a;  &AF040712_1(...   149   4e-35
EZ000381_1(EZ000381|pid:none) TSA: Culex tarsalis Ctar-19 60S ri...   148   7e-35
A63921_1(A63921|pid:none) Sequence 46 from Patent WO9723633.  &C...   147   2e-34
EU125030_1(EU125030|pid:none) Eurythoe complanata ribosomal prot...   146   2e-34
(O61598) RecName: Full=60S ribosomal protein L37a;  &AF052737_1(...   146   3e-34
EU116912_1(EU116912|pid:none) Barentsia elongata putative riboso...   146   3e-34
AM049130_1(AM049130|pid:none) Agriotes lineatus mRNA for ribosom...   145   3e-34
AF363029_1(AF363029|pid:none) Branchiostoma belcheri 60S ribosom...   145   4e-34
AM049133_1(AM049133|pid:none) Sphaerius sp. APV-2005 mRNA for ri...   145   4e-34
protein update 2009. 7. 2
PSORT 

 psg: 0.77  gvh: 0.34  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for FC-BG04 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-BG04E
Full length Seq. 
>FC-BG04E.Seq
AATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGC
TTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTC
ATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTG
CCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAG
ATCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAAT
AAATCAGGACCAATATACACTGGTTTTAAAAAATAAATATATTTAAAATAAAAAAAA
Length of full length seq. 357