FC-BF21
Library FC
(Link to library)
Clone ID FC-BF21
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16377-1
Original site URL
Representative seq. ID FC-BF21P
(Link to Original site)
Representative DNA sequence
>FC-BF21 (FC-BF21Q) /CSM/FC/FC-BF/FC-BF21Q.Seq.d/
ATTTAATTACATACATATATATATATAAACAATAATAAAAATGGGTTTCCGTTTCTTAGA
TATTGTTAAACCATTTACCTCACTCGTTCCAGAGGTTGGTCAACCAGATAGAAAAATTCC
TTTCCGTGAAAAGGTTCTTTGGACAGCAATTTGTTTATTCATTTTCTTAGTTTGCAGTCA
AATTCCACTTTATGGTATTAGATCAACTGATTCATCAGATCCATTTTACTGGGCTAAAGT
TATTATGGCCTCAAACAGAGGTACTTTAATGGAATTAGGTATTTCACCAATCGTTACATC
AGGTATGGTTATGCAATTATTAGGAGGTGCCAAATTAATTGAAATTGATCAATCTGTTAA
AGCCGATAGAGATTTATTCTCTGCTGCCCAAAAATTATTTGGTATGTTAATTTGTGTAGG
TCAAGGTGTAGCTTATATTTGGAGTGGTTCATATGGTGATCCAGCAGTTTTAGGATTTGG
TAACTGCTTTTTAATTGTTTTACAATTATTCTTTGCAGGTATTATTGTTATGCTTTTGGA
TGAACTTTTACAAAAAGGATATGGTATTGGATCAGGTATTTCATTATTTATTGCAACCAA
TATTTGTGAGACCATTGTATGGAAGACATTTTCACCAACTACAGTATCCGTTGGTAAXXX
XXXXXXXGTCAACAAGGTACCTATCCAATCAAGTTATTCTACACTTCAAATATTCCAATC
ATTCTTCAAAGTGCACTCGTTAGCAATCTTTATTTCATCTCTCAATTATTGTATCGTCGT
TTCCCAGATAACATTTTGGTAAACTTATTTGGTGCTTGGAGAACCAGTGAATATTCACAA
CAAATGATTCCAGTCTCTGGTCTCACCTATTACATCAGCTCCCCAAATAATATGAGCGCT
GTTTTGGCCGATCCATTCCATGCCCTCTTTTACATCACCTTTATGTTGACAAGTTGTGCT
CTCTTCTCCAAAGTTTGGATCGAAGTTAGTGGTTCCTCTGCTCGTGACGTTGCTAAGCAA
CTCAAAGATCAACAAATGACCATGAAAGGTCATCGTGATACCTCTGTCATCAAGGAACTC
AATCGTTATATTCCAAACGATGCCGCTTTTGGTGGTCTCTGTATTGGTGCTCTCAAAGTC
GTCGCCGATTTCATGGGTGCCATCGGTTCTGGTACTGGTATTTTATTAGCTGTCACTATC
ATCTATCAATACTTTGAAACCTTTGTTAAAGAACAACAAGAACTTTCTGGTAGTATTGGT
GGTCTTTTCTAAAATAAATAAAAAAAAAAATTTAAATTTAAAAAAAAAAA
sequence update 1997.11.27
Translated Amino Acid sequence
fnyihiyi*TIIKMGFRFLDIVKPFTSLVPEVGQPDRKIPFREKVLWTAICLFIFLVCSQ
IPLYGIRSTDSSDPFYWAKVIMASNRGTLMELGISPIVTSGMVMQLLGGAKLIEIDQSVK
ADRDLFSAAQKLFGMLICVGQGVAYIWSGSYGDPAVLGFGNCFLIVLQLFFAGIIVMLLD
ELLQKGYGIGSGISLFIATNICETIVWKTFSPTTVSVG---

---QQGTYPIKLFYTSNIPIILQSALVSNLYFISQLLYRRFPDNILVNLFGAWRTSEYSQ
QMIPVSGLTYYISSPNNMSAVLADPFHALFYITFMLTSCALFSKVWIEVSGSSARDVAKQ
LKDQQMTMKGHRDTSVIKELNRYIPNDAAFGGLCIGALKVVADFMGAIGSGTGILLAVTI
IYQYFETFVKEQQELSGSIGGLF*nk*kkkfkfkkk


Translated Amino Acid sequence (All Frames)
Frame A:
i*lhtyiyinnnkngfpflryc*tiyltrsrgwstr*knsfp*kgsldsnlfihflslqs
nstlwy*in*firsillg*syyglkqryfngiryftnryirygyaiirrcqin*n*sic*
sr*rfilccpkiiwyvnlcrsrcslylewfiw*sssfriw*llfncftiilcryycyafg
*tftkriwywiryfiiycnqyl*dhcmediftnysirw*---

---vnkvpiqssystlqifqsffkvhslaifisslnycivvsqitfw*tylvlgepvnih
nk*fqslvspitsapqii*alfwpihsmpsftsplc*qvvlsspkfgsklvvpllvtlls
nskink*p*kviviplssrnsivifqtmpllvvsvlvlsksspiswvpsvlvlvfy*lsl
ssintlkpllknnknflvvlvvfskinkkknlnlkkk

Frame B:
fnyihiyi*TIIKMGFRFLDIVKPFTSLVPEVGQPDRKIPFREKVLWTAICLFIFLVCSQ
IPLYGIRSTDSSDPFYWAKVIMASNRGTLMELGISPIVTSGMVMQLLGGAKLIEIDQSVK
ADRDLFSAAQKLFGMLICVGQGVAYIWSGSYGDPAVLGFGNCFLIVLQLFFAGIIVMLLD
ELLQKGYGIGSGISLFIATNICETIVWKTFSPTTVSVG---

---strylsnqvilhfkysnhsskctr*qslfhlsiivssfpr*hfgkliwclenq*ift
tndsslwshllhqlpk*yercfgrsipcpllhhlyvdklcsllqsldrs*wflcs*rc*a
tqrstndherss*ylchqgtqslyskrcrfwwslywcsqsrrrfhgchrfwywyfischy
hlsil*nlc*rttrtfw*ywwsflk*ikkki*i*kkk

Frame C:
lityiyiykq**kwvsvs*illnhlphsfqrlvnqiekflsvkrffgqqfvysfs*favk
fhfmvldqlihqihftglkllwpqtevl*wn*vfhqslhqvwlcny*evpn*lklinllk
pieiysllpknylvc*fv*vkv*lifgvvhmviqqf*dlvtaf*lfynyslqvlllcfwm
nfykkdmvldqvfhyllqpifvrplygrhfhqlqyplv---

---QQGTYPIKLFYTSNIPIILQSALVSNLYFISQLLYRRFPDNILVNLFGAWRTSEYSQ
QMIPVSGLTYYISSPNNMSAVLADPFHALFYITFMLTSCALFSKVWIEVSGSSARDVAKQ
LKDQQMTMKGHRDTSVIKELNRYIPNDAAFGGLCIGALKVVADFMGAIGSGTGILLAVTI
IYQYFETFVKEQQELSGSIGGLF*nk*kkkfkfkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-BF21 (FC-BF21Q) /CSM/FC/FC-BF/FC-BF21Q.Seq.d/ 2405 0.0
FC-440 (FC-440Q) /CSM/CG/CG-FC/FC-440Q.Seq.d/ 2405 0.0
AFO294 (AFO294Q) /CSM/AF/AFO2-D/AFO294Q.Seq.d/ 1241 0.0
AFN556 (AFN556Q) /CSM/AF/AFN5-C/AFN556Q.Seq.d/ 1221 0.0
AFE389 (AFE389Q) /CSM/AF/AFE3-D/AFE389Q.Seq.d/ 1185 0.0
AFK145 (AFK145Q) /CSM/AF/AFK1-B/AFK145Q.Seq.d/ 1178 0.0
AFD265 (AFD265Q) /CSM/AF/AFD2-C/AFD265Q.Seq.d/ 1178 0.0
AFD243 (AFD243Q) /CSM/AF/AFD2-B/AFD243Q.Seq.d/ 1158 0.0
AFL633 (AFL633Q) /CSM/AF/AFL6-B/AFL633Q.Seq.d/ 1150 0.0
SFE748 (SFE748Q) /CSM/SF/SFE7-B/SFE748Q.Seq.d/ 1138 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL668163|AL668163.1 Ciona intestinalis; larval mRNA; EST 5PRIM end of clone 030ZH11 of library directional larval cDNA library from Ciona intestinalis (Ciona). 84 2e-24 3
AV996249|AV996249.1 Ciona intestinalis cDNA, clone:citb43n15, 5' end, single read. 70 8e-21 3
AV968324|AV968324.1 Ciona intestinalis cDNA, clone:cilv15f18, 5' end, single read. 84 9e-21 3
BW291712|BW291712.1 Ciona intestinalis cDNA, clone:cigd045e21, 5' end, single read. 66 1e-19 3
BW049609|BW049609.1 Ciona intestinalis cDNA, clone:cibd068a08, 5' end, single read. 66 2e-19 3
BW019373|BW019373.1 Ciona intestinalis cDNA, clone:rcibd064p24, 3' end, single read. 86 5e-19 2
BW123681|BW123681.1 Ciona intestinalis cDNA, clone:rcitb097j11, 3' end, single read. 92 5e-19 2
BW023354|BW023354.1 Ciona intestinalis cDNA, clone:rcibd075j10, 3' end, single read. 84 7e-19 2
AV675151|AV675151.1 Ciona intestinalis cDNA clone:citb11e17 : 5' end, single read. 52 8e-19 4
BW245344|BW245344.1 Ciona intestinalis cDNA, clone:citb067g20, 5' end, single read. 52 1e-18 4
dna update 2003. 7.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AK017615_1(AK017615|pid:none) Mus musculus 8 days embryo whole b... 308 e-139
(Q54XK2) RecName: Full=Protein transport protein Sec61 subunit a... 409 e-112
AY737549_1(AY737549|pid:none) Toxoptera citricida probable trans... 311 2e-83
AB062670_1(AB062670|pid:none) Drosophila melanogaster mRNA for D... 308 2e-82
BC026179_1(BC026179|pid:none) Homo sapiens Sec61 alpha 2 subunit... 308 3e-82
AY064125_1(AY064125|pid:none) Aedes aegypti clone bR19Mc3 probab... 307 6e-82
BT059399_1(BT059399|pid:none) Salmo salar clone ssal-rgf-537-290... 307 6e-82
(Q98SN9) RecName: Full=Protein transport protein Sec61 subunit a... 307 6e-82
(Q7T277) RecName: Full=Protein transport protein Sec61 subunit a... 307 6e-82
(Q98SN8) RecName: Full=Protein transport protein Sec61 subunit a... 306 8e-82
protein update 2009. 4.14
PSORT

psg: 0.81 gvh: 0.68 alm: 0.15 top: 0.47 tms: 0.40 mit: 0.31 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
28.0 %: plasma membrane
24.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: nuclear
4.0 %: extracellular, including cell wall

>> prediction for FC-BF21 is end

5' end seq. ID FC-BF21F
5' end seq.
>FC-BF21F.Seq
ATTTAATTACATACATATATATATATAAACAATAATAAAAATGGGTTTCCGTTTCTTAGA
TATTGTTAAACCATTTACCTCACTCGTTCCAGAGGTTGGTCAACCAGATAGAAAAATTCC
TTTCCGTGAAAAGGTTCTTTGGACAGCAATTTGTTTATTCATTTTCTTAGTTTGCAGTCA
AATTCCACTTTATGGTATTAGATCAACTGATTCATCAGATCCATTTTACTGGGCTAAAGT
TATTATGGCCTCAAACAGAGGTACTTTAATGGAATTAGGTATTTCACCAATCGTTACATC
AGGTATGGTTATGCAATTATTAGGAGGTGCCAAATTAATTGAAATTGATCAATCTGTTAA
AGCCGATAGAGATTTATTCTCTGCTGCCCAAAAATTATTTGGTATGTTAATTTGTGTAGG
TCAAGGTGTAGCTTATATTTGGAGTGGTTCATATGGTGATCCAGCAGTTTTAGGATTTGG
TAACTGCTTTTTAATTGTTTTACAATTATTCTTTGCAGGTATTATTGTTATGCTTTTGGA
TGAACTTTTACAAAAAGGATATGGTATTGGATCAGGTATTTCATTATTTATTGCAACCAA
TATTTGTGAGACCATTGTATGGAAGACATTTTCACCAACTACAGTATCCGTTGGTAA---
-------
Length of 5' end seq. 657
3' end seq. ID FC-BF21Z
3' end seq.
>FC-BF21Z.Seq
----------GTCAACAAGGTACCTATCCAATCAAGTTATTCTACACTTCAAATATTCCA
ATCATTCTTCAAAGTGCACTCGTTAGCAATCTTTATTTCATCTCTCAATTATTGTATCGT
CGTTTCCCAGATAACATTTTGGTAAACTTATTTGGTGCTTGGAGAACCAGTGAATATTCA
CAACAAATGATTCCAGTCTCTGGTCTCACCTATTACATCAGCTCCCCAAATAATATGAGC
GCTGTTTTGGCCGATCCATTCCATGCCCTCTTTTACATCACCTTTATGTTGACAAGTTGT
GCTCTCTTCTCCAAAGTTTGGATCGAAGTTAGTGGTTCCTCTGCTCGTGACGTTGCTAAG
CAACTCAAAGATCAACAAATGACCATGAAAGGTCATCGTGATACCTCTGTCATCAAGGAA
CTCAATCGTTATATTCCAAACGATGCCGCTTTTGGTGGTCTCTGTATTGGTGCTCTCAAA
GTCGTCGCCGATTTCATGGGTGCCATCGGTTCTGGTACTGGTATTTTATTAGCTGTCACT
ATCATCTATCAATACTTTGAAACCTTTGTTAAAGAACAACAAGAACTTTCTGGTAGTATT
GGTGGTCTTTTCTAAAATAAATAAAAAAAAAAATTTAAATTTAAAAAAAAAAA
Length of 3' end seq. 643
Connected seq. ID FC-BF21P
Connected seq.
>FC-BF21P.Seq
ATTTAATTACATACATATATATATATAAACAATAATAAAAATGGGTTTCCGTTTCTTAGA
TATTGTTAAACCATTTACCTCACTCGTTCCAGAGGTTGGTCAACCAGATAGAAAAATTCC
TTTCCGTGAAAAGGTTCTTTGGACAGCAATTTGTTTATTCATTTTCTTAGTTTGCAGTCA
AATTCCACTTTATGGTATTAGATCAACTGATTCATCAGATCCATTTTACTGGGCTAAAGT
TATTATGGCCTCAAACAGAGGTACTTTAATGGAATTAGGTATTTCACCAATCGTTACATC
AGGTATGGTTATGCAATTATTAGGAGGTGCCAAATTAATTGAAATTGATCAATCTGTTAA
AGCCGATAGAGATTTATTCTCTGCTGCCCAAAAATTATTTGGTATGTTAATTTGTGTAGG
TCAAGGTGTAGCTTATATTTGGAGTGGTTCATATGGTGATCCAGCAGTTTTAGGATTTGG
TAACTGCTTTTTAATTGTTTTACAATTATTCTTTGCAGGTATTATTGTTATGCTTTTGGA
TGAACTTTTACAAAAAGGATATGGTATTGGATCAGGTATTTCATTATTTATTGCAACCAA
TATTTGTGAGACCATTGTATGGAAGACATTTTCACCAACTACAGTATCCGTTGGTAA---
-------GTCAACAAGGTACCTATCCAATCAAGTTATTCTACACTTCAAATATTCCAATC
ATTCTTCAAAGTGCACTCGTTAGCAATCTTTATTTCATCTCTCAATTATTGTATCGTCGT
TTCCCAGATAACATTTTGGTAAACTTATTTGGTGCTTGGAGAACCAGTGAATATTCACAA
CAAATGATTCCAGTCTCTGGTCTCACCTATTACATCAGCTCCCCAAATAATATGAGCGCT
GTTTTGGCCGATCCATTCCATGCCCTCTTTTACATCACCTTTATGTTGACAAGTTGTGCT
CTCTTCTCCAAAGTTTGGATCGAAGTTAGTGGTTCCTCTGCTCGTGACGTTGCTAAGCAA
CTCAAAGATCAACAAATGACCATGAAAGGTCATCGTGATACCTCTGTCATCAAGGAACTC
AATCGTTATATTCCAAACGATGCCGCTTTTGGTGGTCTCTGTATTGGTGCTCTCAAAGTC
GTCGCCGATTTCATGGGTGCCATCGGTTCTGGTACTGGTATTTTATTAGCTGTCACTATC
ATCTATCAATACTTTGAAACCTTTGTTAAAGAACAACAAGAACTTTCTGGTAGTATTGGT
GGTCTTTTCTAAAATAAATAAAAAAAAAAATTTAAATTTAAAAAAAAAAA
Length of connected seq. 1300
Full length Seq ID -
Full length Seq. -
Length of full length seq. -