>FC-BF11 (FC-BF11Q) /CSM/FC/FC-BF/FC-BF11Q.Seq.d/
XXXXXXXXXXCCATTACGTATTCCATTACAAGATGTCTACAAGATCGGTGGTATCGGTAC
TGTTCCAGTAGGTCGTGTCGAAACTGGTATCATTAAACCAGGTATGGTCGTCACCTTTGC
CCCAGCTGGTCTCTCAACTGAAGTCAAATCAGTCGAAATGCATCACGAACAACTCCCAGA
AGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTTCAGTCAAAGAAATTAA
AAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGAAACTGAAAAATTCGT
TGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGGTTACTCACCAGTCTT
AGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAAATCGTCGATAAAGTTGATCG
TCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCGTCTTAAAGAATGGTGA
TGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGAATCCTTCACTGAATA
CCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTCGCCGTCGGTGTCAT
CAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCC
ATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAGCATTTTATAATAATTTTAA
AAAAAAAA

---LRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHEQLPEA
RPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLD
CHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYP
PLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**iafynnfkk
k

Frame A:
---hyvfhykmstrsvvsvlfq*vvsklvslnqvwssplpqlvsqlksnqskcitnnsqk
pvqvtm*vstlktfqskklkevwslvtpktihhkklknsllklssstiqvksmlvthqs*
ivtlltlpvnslkssiklivvlvpslpkkvlppss*rmvmplwsn*phlvqcvlnpslnt
hh*vvspsei*dkpspsvssnqpsrkpqvkpvirkvllphqkrnk*iiflnk*hfiiilk
kk


Frame B:
---itysitrclqdrwyrycssrscrnwyh*trygrhlcpswsln*sqisrnasrttprs
psr*qcrfqr*krfsqrn*krygrw*lqkrsttrn*kircssyrpqpsrsnpcwlltslr
lshcshcl*ih*nrr*s*ssywcrrcqrrycrrrlkew*crygrinpissnvc*ilh*ip
tirsfrrqryetnrrrrchqinrqespr*sr**ercccpikkeink*yflinsil**f*k
k


Frame C:
---LRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHEQLPEA
RPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLD
CHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYP
PLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**iafynnfkk
k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE701 (SLE701Q) /CSM/SL/SLE7-A/SLE701Q.Seq.d/                       1403   0.0
SLE193 (SLE193Q) /CSM/SL/SLE1-D/SLE193Q.Seq.d/                       1403   0.0
SLB795 (SLB795Q) /CSM/SL/SLB7-D/SLB795Q.Seq.d/                       1403   0.0
SLB249 (SLB249Q) /CSM/SL/SLB2-C/SLB249Q.Seq.d/                       1403   0.0
SLB158 (SLB158Q) /CSM/SL/SLB1-C/SLB158Q.Seq.d/                       1403   0.0
SLB144 (SLB144Q) /CSM/SL/SLB1-B/SLB144Q.Seq.d/                       1403   0.0
SLB142 (SLB142Q) /CSM/SL/SLB1-B/SLB142Q.Seq.d/                       1403   0.0
SLB140 (SLB140Q) /CSM/SL/SLB1-B/SLB140Q.Seq.d/                       1403   0.0
SLB125 (SLB125Q) /CSM/SL/SLB1-B/SLB125Q.Seq.d/                       1403   0.0
SLA840 (SLA840Q) /CSM/SL/SLA8-B/SLA840Q.Seq.d/                       1403   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X55973|X55973.1 D. discoideum EF1-I gene for elongation factor 1 alpha.  1292  0.0  1
X55972|X55972.1 D. discoideum EF1-II gene for elongation factor 1 alpha.  1237  0.0  1
AF016242|AF016242.1 Dictyostelium discoideum protein synthesis elongation factor 1-alpha (tef2) gene, partial cds.  1067  0.0  1
M29935|M29935.1 C.albicans elongation factor 1-alpha (TEF-2) gene, complete cds.   131  e-100  5
M29934|M29934.1 C.albicans elongation factor 1-alpha (TEF-1) gene, complete cds.   117  2e-95  5
AX109679|AX109679.1 Sequence 412 from Patent WO0123604.          147  3e-92  5
AX109681|AX109681.1 Sequence 414 from Patent WO0123604.          147  1e-91  5
AX109682|AX109682.1 Sequence 415 from Patent WO0123604.          147  1e-91  5
AX109678|AX109678.1 Sequence 411 from Patent WO0123604.          131  4e-88  5
AX109677|AX109677.1 Sequence 410 from Patent WO0123604.          131  4e-88  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio...   403   e-111
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati...   403   e-111
(P18624) RecName: Full=Elongation factor 1-alpha;          Short...   403   e-111
AY542532_1(AY542532|pid:none) Cladonema radiatum translation elo...   325   1e-87
(P41745) RecName: Full=Elongation factor 1-alpha;          Short...   323   3e-87
AY643816_1(AY643816|pid:none) Lycogala epidendrum elongation fac...   322   9e-87
Y09023_1(Y09023|pid:none) G.cydonium mRNA for elongation factor ...   321   1e-86
AY582829_1(AY582829|pid:none) Acanthamoeba culbertsoni ef1a gene...   321   2e-86
AY643820_1(AY643820|pid:none) Arcyria denudata elongation factor...   320   2e-86
AJ581004_1(AJ581004|pid:none) Axinella verrucosa mRNA for elonga...   320   2e-86

 psg: 0.89  gvh: 0.50  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for FC-BF11 is nuc

>FC-BF11Z.Seq
----------CCATTACGTATTCCATTACAAGATGTCTACAAGATCGGTGGTATCGGTAC
TGTTCCAGTAGGTCGTGTCGAAACTGGTATCATTAAACCAGGTATGGTCGTCACCTTTGC
CCCAGCTGGTCTCTCAACTGAAGTCAAATCAGTCGAAATGCATCACGAACAACTCCCAGA
AGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTTCAGTCAAAGAAATTAA
AAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGAAACTGAAAAATTCGT
TGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGGTTACTCACCAGTCTT
AGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAAATCGTCGATAAAGTTGATCG
TCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCGTCTTAAAGAATGGTGA
TGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGAATCCTTCACTGAATA
CCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTCGCCGTCGGTGTCAT
CAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCC
ATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAGCATTTTATAATAATTTTAA
AAAAAAAA