>FC-BE19 (FC-BE19Q) /CSM/FC/FC-BE/FC-BE19Q.Seq.d/
ATATGTTCCAATCTATTTGTATTTTTAAAGCAACACACAAATAACAATAATAATAATAAT
AAATAATAAACTTATACCTACATAATATTTGGTTTTTGTTTGTCAAAAAAAAAAAAAGAA
ATTTGTAAAATTTTATTATAAAACATACAAATTAAAAAAAAAAAAAAAAAAAAACAAATA
TTTTCACTTACAATTTAAAAAAAAAAAAAAAAAXXXXXXXXXXTACAAAGATGTAATGAT
ATGCTTGTAGATGACCCAAATTTTAGTACAAATAAAGTACATAAAGATAAATTGGATGAT
TATTTAAATGAATATAGAAGATTAAAAAAGAATATAAAATCAACATTAGAAAGTTTTGAA
CTATTGGAAGGTTCAACATATAATAAAAATAAAGATACAGAAATACCAATGACAAGTTTA
TTGAGAGAACATTCTACCCTTCAAAGTAGTTCCTATGTACAAGATTCAATATTGGGTCAA
GCAAGACAAGCACATGAAGCTTTAGAAAATCAAAGAAGAATATTAAGAGGTACTTCTCAT
GAAATTAATACAATGCCAAGTTTATTTCAAACAATTGATGGTGTAACATCAAAAATTNAA
AGATATAAGCAAAGAAATGTTGTAGTTTTAGGTTTGTTAATTGGTGGTTTAATTTGTTTC
CTTTTTTATTATAGCCTTAAAAAGTAATAAATNAAAATTANCNANATATATNANANNTNN
AANNTNNNNNNTNNAATATATATTTAAAAATA

yvpiylyf*sntqitiiiiinnklipt*YLVFVCQKKKKKFVKFYYKTYKLKKKKKKNKY
FHLQFKKKKK---

---QRCNDMLVDDPNFSTNKVHKDKLDDYLNEYRRLKKNIKSTLESFELLEGSTYNKNKD
TEIPMTSLLREHSTLQSSSYVQDSILGQARQAHEALENQRRILRGTSHEINTMPSLFQTI
DGVTSKIXRYKQRNVVVLGLLIGGLICFLFYYSLKK**xkixxiyxxxxxxxxiyi*k

Frame A:
icsnlfvflkqhtnnnnnnnk**tytyiifgfclskkkkeickill*niqikkkkkkkqi
fslti*kkkkk---

---ykdvmicl*mtqilvqikyikinwmii*mnied*kri*nqh*kvlnywkvqhiikik
iqkyq*qvy*enilpfkvvpmykiqywvkqdkhmkl*kikeey*evllmkliqcqvyfkq
lmv*hqkxkdiskeml*f*vc*lvv*fvsffiialksnkxklxxyxxxxxxxxxyifkn

Frame B:
yvpiylyf*sntqitiiiiinnklipt*YLVFVCQKKKKKFVKFYYKTYKLKKKKKKNKY
FHLQFKKKKK---

---tkm**yacr*pkf*yk*st*r*ig*lfk*i*kikkeykinirkf*tigrfni**k*r
yrntndkfiertfypsk*flctrfnigssktst*sfrkskknikryfs*n*ynakfisnn
*wcniknxki*akkccsfrfvnwwfnlfpfll*p*kvinxnxxxixxxxxxxxniylki

Frame C:
mfqsicifkathk*q*****iinlylhniwflfvkkkkrnl*nfiikhtn*kkkkkktni
ftynlkkkkk---

---QRCNDMLVDDPNFSTNKVHKDKLDDYLNEYRRLKKNIKSTLESFELLEGSTYNKNKD
TEIPMTSLLREHSTLQSSSYVQDSILGQARQAHEALENQRRILRGTSHEINTMPSLFQTI
DGVTSKIXRYKQRNVVVLGLLIGGLICFLFYYSLKK**xkixxiyxxxxxxxxiyi*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BE19 (FC-BE19Q) /CSM/FC/FC-BE/FC-BE19Q.Seq.d/                      938   0.0
VFC168 (VFC168Q) /CSM/VF/VFC1-C/VFC168Q.Seq.d/                        642   0.0
SSF183 (SSF183Q) /CSM/SS/SSF1-D/SSF183Q.Seq.d/                         40   0.048
SSA513 (SSA513Q) /CSM/SS/SSA5-A/SSA513Q.Seq.d/                         40   0.048
SSM609 (SSM609Q) /CSM/SS/SSM6-A/SSM609Q.Seq.d/                         38   0.19
SSC603 (SSC603Q) /CSM/SS/SSC6-A/SSC603Q.Seq.d/                         38   0.19
AHO175 (AHO175Q) /CSM/AH/AHO1-D/AHO175Q.Seq.d/                         38   0.19
AHG750 (AHG750Q) /CSM/AH/AHG7-C/AHG750Q.Seq.d/                         38   0.19
VHL895 (VHL895Q) /CSM/VH/VHL8-D/VHL895Q.Seq.d/                         36   0.74
VHJ258 (VHJ258Q) /CSM/VH/VHJ2-C/VHJ258Q.Seq.d/                         36   0.74

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    34  2e-05  10
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    40  6e-05  8
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          46  0.001  10
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    34  0.001  11
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    40  0.004  8
AE014827|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence.    38  0.005  9
AL035477|AL035477.6 Plasmodium falciparum MAL4P4.                 38  0.008  10
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    32  0.014  11
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    44  0.014  10
AE001410|AE001410.2 Plasmodium falciparum 3D7 chromosome 2 section 47 of 73 of the complete sequence.    36  0.024  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK071820_1(AK071820|pid:none) Oryza sativa Japonica Group cDNA c...    60   7e-08
EU969670_1(EU969670|pid:none) Zea mays clone 333859 golgi SNARE ...    59   2e-07
BT065971_1(BT065971|pid:none) Zea mays full-length cDNA clone ZM...    59   2e-07
BT052356_1(BT052356|pid:none) Medicago truncatula clone MTYFD_FE...    55   2e-06
CP000590_331(CP000590|pid:none) Ostreococcus lucimarinus CCE9901...    55   3e-06
BC093179_1(BC093179|pid:none) Danio rerio zgc:112064, mRNA (cDNA...    53   1e-05
CR848485_1(CR848485|pid:none) Xenopus tropicalis finished cDNA, ...    52   2e-05
CR954210_342(CR954210|pid:none) Ostreococcus tauri strain OTTH05...    51   4e-05
AJ720233_1(AJ720233|pid:none) Gallus gallus mRNA for hypothetica...    49   1e-04
(Q2TBU3) RecName: Full=Golgi SNAP receptor complex member 1;  &B...    48   4e-04

 psg: 0.57  gvh: 0.06  alm: 0.18  top: 0.47  tms: 0.07  mit: 0.32  mip: 0.08
 nuc: 1.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for FC-BE19 is cyt

>FC-BE19F.Seq
ATATGTTCCAATCTATTTGTATTTTTAAAGCAACACACAAATAACAATAATAATAATAAT
AAATAATAAACTTATACCTACATAATATTTGGTTTTTGTTTGTCAAAAAAAAAAAAAGAA
ATTTGTAAAATTTTATTATAAAACATACAAATTAAAAAAAAAAAAAAAAAAAAACAAATA
TTTTCACTTACAATTTAAAAAAAAAAAAAAAAA----------

>FC-BE19Z.Seq
----------TACAAAGATGTAATGATATGCTTGTAGATGACCCAAATTTTAGTACAAAT
AAAGTACATAAAGATAAATTGGATGATTATTTAAATGAATATAGAAGATTAAAAAAGAAT
ATAAAATCAACATTAGAAAGTTTTGAACTATTGGAAGGTTCAACATATAATAAAAATAAA
GATACAGAAATACCAATGACAAGTTTATTGAGAGAACATTCTACCCTTCAAAGTAGTTCC
TATGTACAAGATTCAATATTGGGTCAAGCAAGACAAGCACATGAAGCTTTAGAAAATCAA
AGAAGAATATTAAGAGGTACTTCTCATGAAATTAATACAATGCCAAGTTTATTTCAAACA
ATTGATGGTGTAACATCAAAAATTNAAAGATATAAGCAAAGAAATGTTGTAGTTTTAGGT
TTGTTAATTGGTGGTTTAATTTGTTTCCTTTTTTATTATAGCCTTAAAAAGTAATAAATN
AAAATTANCNANATATATNANANNTNNAANNTNNNNNNTNNAATATATATTTAAAAATA

>FC-BE19P.Seq
ATATGTTCCAATCTATTTGTATTTTTAAAGCAACACACAAATAACAATAATAATAATAAT
AAATAATAAACTTATACCTACATAATATTTGGTTTTTGTTTGTCAAAAAAAAAAAAAGAA
ATTTGTAAAATTTTATTATAAAACATACAAATTAAAAAAAAAAAAAAAAAAAAACAAATA
TTTTCACTTACAATTTAAAAAAAAAAAAAAAAA----------TACAAAGATGTAATGAT
ATGCTTGTAGATGACCCAAATTTTAGTACAAATAAAGTACATAAAGATAAATTGGATGAT
TATTTAAATGAATATAGAAGATTAAAAAAGAATATAAAATCAACATTAGAAAGTTTTGAA
CTATTGGAAGGTTCAACATATAATAAAAATAAAGATACAGAAATACCAATGACAAGTTTA
TTGAGAGAACATTCTACCCTTCAAAGTAGTTCCTATGTACAAGATTCAATATTGGGTCAA
GCAAGACAAGCACATGAAGCTTTAGAAAATCAAAGAAGAATATTAAGAGGTACTTCTCAT
GAAATTAATACAATGCCAAGTTTATTTCAAACAATTGATGGTGTAACATCAAAAATTNAA
AGATATAAGCAAAGAAATGTTGTAGTTTTAGGTTTGTTAATTGGTGGTTTAATTTGTTTC
CTTTTTTATTATAGCCTTAAAAAGTAATAAATNAAAATTANCNANATATATNANANNTNN
AANNTNNNNNNTNNAATATATATTTAAAAATA