FC-BE10
Library FC
(Link to library)
Clone ID FC-BE10
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16229-1
Original site URL
Representative seq. ID FC-BE10Z
(Link to Original site)
Representative DNA sequence
>FC-BE10 (FC-BE10Q) /CSM/FC/FC-BE/FC-BE10Q.Seq.d/
XXXXXXXXXXGCACTACCACCAGTCGATGGTGTTTGTGCAATGGCACCAAAAGTTTTATC
AGGTGAACTTTTCAAAGACCGTAAAGTTGTTTTATTCGCTGTTCCAGGTGCTTTTACTCC
AACTTGTTCAGCCAAACATTTACCAGGTTTTATTGAAAAATCAGAAGAAATTAAAAAAAA
AGGTATCACTGAAATCTTTTGTATTGCCACCAATGACCCATTTGTTATGAGTGCTTGGGG
TAAAGACGTTAATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAATTCAC
TAAAAAGATTGGACTTGAAATGGATGGTAAGGCTTTCATACTTGGTGAGACAGATCTCAA
AAATATGCTATGATCCTAGACACTGGTGTTGTCAAACATAAACAGTTGAAGAAGGTGGTA
AATAAAGTATCATCTGCTGAAGCAATCTTAAAACAATTATAAACATAAAATCAACTATAA
ATAATCAAAAAAGAAAAAAAATAAAAAAAAAAAAATATAAAATTTTAGAAAAAAGTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAC
sequence update 1997.10. 3
Translated Amino Acid sequence
---LPPVDGVCAMAPKVLSGELFKDRKVVLFAVPGAFTPTCSAKHLPGFIEKSEEIKKKG
ITEIFCIATNDPFVMSAWGKDVNAGTAVTLLSDGNSEFTKKIGLEMDGKAFILGETDLKN
ML*s*tlvlsnins*rrw*ikyhllkqs*nnykhkinyk*skkkknkkkki*nfrkk*kk
kkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---hyhqsmvfvqwhqkfyqvnfsktvklfyslfqvlllqlvqpniyqvllknqkklkkk
vslksfvlppmthll*vlgvktlmqvlqllyfqmvtlnslkrldlkwmvrlsylvrqisk
icydprhwccqt*tveeggk*siic*snlktiinikstinnqkrkkikkkkykilekskk
kkkkkkkn


Frame B:
---tttsrwclcngtksfir*tfqrp*scfircsrcfysnlfsqtftrfy*kirrn*kkr
yh*nllychq*picyeclg*rr*crycsyftfrw*l*ih*kdwt*ngw*gfhtw*drsqk
yamildtgvvkhkqlkkvvnkvssaeailkql*t*nql*iikkekk*kkknikf*kkvkk
kkkkkkk


Frame C:
---LPPVDGVCAMAPKVLSGELFKDRKVVLFAVPGAFTPTCSAKHLPGFIEKSEEIKKKG
ITEIFCIATNDPFVMSAWGKDVNAGTAVTLLSDGNSEFTKKIGLEMDGKAFILGETDLKN
ML*s*tlvlsnins*rrw*ikyhllkqs*nnykhkinyk*skkkknkkkki*nfrkk*kk
kkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-BE10 (FC-BE10Q) /CSM/FC/FC-BE/FC-BE10Q.Seq.d/ 890 0.0
VSD213 (VSD213Q) /CSM/VS/VSD2-A/VSD213Q.Seq.d/ 743 0.0
VSB436 (VSB436Q) /CSM/VS/VSB4-B/VSB436Q.Seq.d/ 743 0.0
VSA450 (VSA450Q) /CSM/VS/VSA4-C/VSA450Q.Seq.d/ 743 0.0
SSG643 (SSG643Q) /CSM/SS/SSG6-B/SSG643Q.Seq.d/ 743 0.0
SSF753 (SSF753Q) /CSM/SS/SSF7-C/SSF753Q.Seq.d/ 743 0.0
SSE376 (SSE376Q) /CSM/SS/SSE3-D/SSE376Q.Seq.d/ 735 0.0
SHJ382 (SHJ382Q) /CSM/SH/SHJ3-D/SHJ382Q.Seq.d/ 735 0.0
VSD185 (VSD185Q) /CSM/VS/VSD1-D/VSD185Q.Seq.d/ 722 0.0
VHF501 (VHF501Q) /CSM/VH/VHF5-A/VHF501Q.Seq.d/ 720 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BF779954|BF779954.1 3254-25 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3254-25, mRNA sequence. 48 2e-06 2
AX345182|AX345182.1 Sequence 253 from Patent WO0200928. 46 0.45 1
BQ476340|BQ476340.1 curculio3e06.b Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 5', mRNA sequence. 46 0.45 1
BX004766|BX004766.9 Zebrafish DNA sequence from clone DKEY-5P1 in linkage group 20. 46 0.45 1
BQ476622|BQ476622.1 curculio3e06.g Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 3', mRNA sequence. 46 0.45 1
AC104590|AC104590.4 Homo sapiens chromosome 15, clone RP11-643M14, complete sequence. 34 0.62 5
AC109206|AC109206.5 Mus musculus clone RP23-142F22, WORKING DRAFT SEQUENCE, 3 ordered pieces. 42 1.1 2
AC131482|AC131482.4 Rattus norvegicus clone CH230-5P16, WORKING DRAFT SEQUENCE, 3 unordered pieces. 38 1.2 2
AL353730|AL353730.13 Human DNA sequence from clone RP11-55P9 on chromosome 9 Contains GSSs and STSs. 44 1.8 1
AC002340|AC002340.3 Arabidopsis thaliana chromosome 2 BAC T11J7 genomic sequence, complete sequence. 38 1.9 2
dna update 2003. 7.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000655_172(CP000655|pid:none) Polynucleobacter necessarius sub... 105 9e-24
CP001010_161(CP001010|pid:none) Polynucleobacter necessarius sub... 104 1e-23
AE017282_41(AE017282|pid:none) Methylococcus capsulatus str. Bat... 100 2e-22
CP000613_3568(CP000613|pid:none) Rhodospirillum centenum SW, com... 107 3e-22
BA000032_1293(BA000032|pid:none) Vibrio parahaemolyticus RIMD 22... 96 6e-22
CU207211_2650(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 95 1e-21
CP000269_3009(CP000269|pid:none) Janthinobacterium sp. Marseille... 95 1e-21
AE005673_3368(AE005673|pid:none) Caulobacter crescentus CB15, co... 104 1e-21
CP000790_1683(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 95 2e-21
CP000681_3819(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 94 4e-21
protein update 2009. 4.14
PSORT

psg: 0.75 gvh: 0.57 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: mitochondrial
8.0 %: peroxisomal

>> prediction for FC-BE10 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-BE10Z
3' end seq.
>FC-BE10Z.Seq
----------GCACTACCACCAGTCGATGGTGTTTGTGCAATGGCACCAAAAGTTTTATC
AGGTGAACTTTTCAAAGACCGTAAAGTTGTTTTATTCGCTGTTCCAGGTGCTTTTACTCC
AACTTGTTCAGCCAAACATTTACCAGGTTTTATTGAAAAATCAGAAGAAATTAAAAAAAA
AGGTATCACTGAAATCTTTTGTATTGCCACCAATGACCCATTTGTTATGAGTGCTTGGGG
TAAAGACGTTAATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAATTCAC
TAAAAAGATTGGACTTGAAATGGATGGTAAGGCTTTCATACTTGGTGAGACAGATCTCAA
AAATATGCTATGATCCTAGACACTGGTGTTGTCAAACATAAACAGTTGAAGAAGGTGGTA
AATAAAGTATCATCTGCTGAAGCAATCTTAAAACAATTATAAACATAAAATCAACTATAA
ATAATCAAAAAAGAAAAAAAATAAAAAAAAAAAAATATAAAATTTTAGAAAAAAGTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAC
Length of 3' end seq. 556
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -