NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BD22
Library FC
(Link to library)
Clone ID FC-BD22
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15177-1
Original site URL
Representative seq. ID FC-BD22E
(Link to Original site)
Representative DNA sequence 
>FC-BD22 (FC-BD22Q) /CSM/FC/FC-BD/FC-BD22Q.Seq.d/
AAAAATAGAAAATAATCTTTTAAAATAAATTATATATATTTATATTTTATTATTAATAAA
TATGGAAAAAGAACAAGTTTGGTATATTACAGGTTGTACAAGTGGATGTGGATTAGCATT
GGTTGAGAAATTATTAAAGATTAAGGGTACAAAAGTTGCAGGAACAACAAGGGATTTAAA
AAAAGATTGAACAATTATCAATTTATAAGGATCAAAATTTTTTAGCATTACAAGTTGACT
TGGTAAATAGTAAATCAGTTGAAGAATCAATTGAAAAAACAATTAAACATTTTGGAAGTA
TTACTCATGTTGTAAATAATGCAGGCTTTGCTTTAATGGGTACTGTTGAAGAGGCAAGTG
ATAAAGAGCAAAGAGAGCAAATGGACGTTTGCTATTTCGCTCCATTAAATGTAATTAGAT
CAGTGTTACCACACTTTCGTTCAAAATCACATGGTTATATCTTTAATATTGGCTCTGGTG
CTGGGTTTAGAGGTATAGCTAATTTGGGTGCTTATTCCGGTTCAAAATTCGCAATCACTG
GTATTACCGAGGCATTACATGAAGAGGTTAAACAATTCTCTATTAATGTATCAACTATTG
TTTTAGGCTATATTGAAACAGATTTCCATGAAGCAATTCCAGTGGCTAAAAATTTAATTG
ATTGTTATTCTACCCAAGCTTTTAGTGAACAGCGTAAAGAAAATTTAAAGAAAATTATTG
GTGGTGATCCACAAAAAGTTGCTGATGTTTTAATTGATTATTCATACAAATCAAATTTAC
CTTTTAATATTTTCGTTGGTCCAACTAATCATTTCAATAATATTGAAACAAGAGCTAAAG
AATTATTAAATCAAATTCAATTACAAAGAGAAAAAAATAATGTTCAAAAATCTTAATTAT
TAAAAAATAATAAATAAATAAAAAAAAATAAAAAAATAAAAAAAAATAATAATAATAAAA
TTTTGAAATGTATATATCTATTTTTTAATTCTTTTTTTTTTTTTTTTAAAAACTTCTAGG
TTTTTTTAAACAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997.10. 2
Translated Amino Acid sequence 
k*kiif*nklyififyy**iwkknkfgilqvvqvdvd*hwlrny*rlrvqklqeqqgi*K
KIEQLSIYKDQNFLALQVDLVNSKSVEESIEKTIKHFGSITHVVNNAGFALMGTVEEASD
KEQREQMDVCYFAPLNVIRSVLPHFRSKSHGYIFNIGSGAGFRGIANLGAYSGSKFAITG
ITEALHEEVKQFSINVSTIVLGYIETDFHEAIPVAKNLIDCYSTQAFSEQRKENLKKIIG
GDPQKVADVLIDYSYKSNLPFNIFVGPTNHFNNIETRAKELLNQIQLQREKNNVQKS*ll
knnk*ikknkkikknnnnkilkciylffnsfffffknf*vflnkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
knrk*sfkinyiylyfiinkygkrtslvyyrlykwmwisig*eiikd*gykscrnnkgfk
krlnnyqfirikif*hykltw*ivnqlknqlkkqlnilevllml*imqall*wvllkrqv
ikskeskwtfaislh*m*ldqcyhtfvqnhmvislilalvlglev*liwvlipvqnsqsl
vlprhymkrlnnsllmyqllf*ailkqismkqfqwlki*livilpkllvnsvkki*rkll
vvihkkllmf*liihtnqiyllifslvqliisiilkqelkny*ikfnykekkimfknlny
*kiink*kkikk*kkiiiikf*nvyiyflilfffflktsrff*tkkkkkkk


Frame B:
kiennllk*iiyiyilllinmekeqvwyitgctsgcglalvekllkikgtkvagttrdlk
kd*tiinl*gskffsits*lgk**is*rin*knn*tfwkyyscck*crlcfngyc*rgk*
*rakrangrllfrsikcn*isvttlsfkitwlyl*ywlwcwv*rys*fgclfrfkirnhw
yyrgit*rg*tily*cinycfrly*nrfp*snssg*kfn*llfypsf**ta*rkfkenyw
w*stksc*cfn*lfiqikftf*yfrwsn*sfq*y*nks*riiksnsitkrkk*cskilii
kk**inkkk*knkkk****nfemyisif*ffffff*kllgffkqkkkkkk


Frame C:
k*kiif*nklyififyy**iwkknkfgilqvvqvdvd*hwlrny*rlrvqklqeqqgi*K
KIEQLSIYKDQNFLALQVDLVNSKSVEESIEKTIKHFGSITHVVNNAGFALMGTVEEASD
KEQREQMDVCYFAPLNVIRSVLPHFRSKSHGYIFNIGSGAGFRGIANLGAYSGSKFAITG
ITEALHEEVKQFSINVSTIVLGYIETDFHEAIPVAKNLIDCYSTQAFSEQRKENLKKIIG
GDPQKVADVLIDYSYKSNLPFNIFVGPTNHFNNIETRAKELLNQIQLQREKNNVQKS*ll
knnk*ikknkkikknnnnkilkciylffnsfffffknf*vflnkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BD22 (FC-BD22Q) /CSM/FC/FC-BD/FC-BD22Q.Seq.d/                     1558   0.0
FC-BD20 (FC-BD20Q) /CSM/FC/FC-BD/FC-BD20Q.Seq.d/                     1558   0.0
FC-418 (FC-418Q) /CSM/CG/CG-FC/FC-418Q.Seq.d/                        1558   0.0
VSJ669 (VSJ669Q) /CSM/VS/VSJ6-C/VSJ669Q.Seq.d/                       1548   0.0
SSG692 (SSG692Q) /CSM/SS/SSG6-D/SSG692Q.Seq.d/                       1475   0.0
SSK453 (SSK453Q) /CSM/SS/SSK4-C/SSK453Q.Seq.d/                       1172   0.0
VSI465 (VSI465Q) /CSM/VS/VSI4-C/VSI465Q.Seq.d/                         70   8e-11
VSI280 (VSI280Q) /CSM/VS/VSI2-D/VSI280Q.Seq.d/                         70   8e-11
VHH578 (VHH578Q) /CSM/VH/VHH5-D/VHH578Q.Seq.d/                         70   8e-11
VFH563 (VFH563Q) /CSM/VF/VFH5-C/VFH563Q.Seq.d/                         70   8e-11
own update 2002.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    34   4e-06  15
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   2e-05  17
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   7e-05  20
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           34   9e-05  21
AC135210|AC135210.2 Danio rerio clone CH211-172N10 strain Tue, WORKING DRAFT SEQUENCE, 11 ordered pieces.    36   2e-04  10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    48   3e-04  20
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    34   0.001  16
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    30   0.001  12
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    32   0.001  15
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3.    34   0.001  15
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000685_1834(CP000685|pid:none) Flavobacterium johnsoniae UW101...   148   2e-39
AC116960_60(AC116960|pid:none) Dictyostelium discoideum chromoso...   145   7e-39
CP001026_795(CP001026|pid:none) Burkholderia ambifaria MC40-6 ch...   139   1e-34
CP000284_588(CP000284|pid:none) Methylobacillus flagellatus KT, ...   137   5e-34
AP009387_68(AP009387|pid:none) Burkholderia multivorans ATCC 176...   132   1e-30
CP000480_1581(CP000480|pid:none) Mycobacterium smegmatis str. MC...   118   3e-29
CP000629_710(CP000629|pid:none) Agrobacterium radiobacter K84 ch...   117   5e-28
AM420293_6874(AM420293|pid:none) Saccharopolyspora erythraea NRR...   114   1e-27
CP000680_2191(CP000680|pid:none) Pseudomonas mendocina ymp, comp...   122   2e-27
CP000960_881(CP000960|pid:none) Burkholderia cenocepacia MC0-3 c...   111   2e-27
protein update 2009. 7. 2
PSORT 

 psg: 0.76  gvh: 0.49  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for FC-BD22 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-BD22E
Full length Seq. 
>FC-BD22E.Seq
AAAAATAGAAAATAATCTTTTAAAATAAATTATATATATTTATATTTTATTATTAATAAA
TATGGAAAAAGAACAAGTTTGGTATATTACAGGTTGTACAAGTGGATGTGGATTAGCATT
GGTTGAGAAATTATTAAAGATTAAGGGTACAAAAGTTGCAGGAACAACAAGGGATTTAAA
AAAAGATTGAACAATTATCAATTTATAAGGATCAAAATTTTTTAGCATTACAAGTTGACT
TGGTAAATAGTAAATCAGTTGAAGAATCAATTGAAAAAACAATTAAACATTTTGGAAGTA
TTACTCATGTTGTAAATAATGCAGGCTTTGCTTTAATGGGTACTGTTGAAGAGGCAAGTG
ATAAAGAGCAAAGAGAGCAAATGGACGTTTGCTATTTCGCTCCATTAAATGTAATTAGAT
CAGTGTTACCACACTTTCGTTCAAAATCACATGGTTATATCTTTAATATTGGCTCTGGTG
CTGGGTTTAGAGGTATAGCTAATTTGGGTGCTTATTCCGGTTCAAAATTCGCAATCACTG
GTATTACCGAGGCATTACATGAAGAGGTTAAACAATTCTCTATTAATGTATCAACTATTG
TTTTAGGCTATATTGAAACAGATTTCCATGAAGCAATTCCAGTGGCTAAAAATTTAATTG
ATTGTTATTCTACCCAAGCTTTTAGTGAACAGCGTAAAGAAAATTTAAAGAAAATTATTG
GTGGTGATCCACAAAAAGTTGCTGATGTTTTAATTGATTATTCATACAAATCAAATTTAC
CTTTTAATATTTTCGTTGGTCCAACTAATCATTTCAATAATATTGAAACAAGAGCTAAAG
AATTATTAAATCAAATTCAATTACAAAGAGAAAAAAATAATGTTCAAAAATCTTAATTAT
TAAAAAATAATAAATAAATAAAAAAAAATAAAAAAATAAAAAAAAATAATAATAATAAAA
TTTTGAAATGTATATATCTATTTTTTAATTCTTTTTTTTTTTTTTTTAAAAACTTCTAGG
TTTTTTTAAACAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 1053