FC-BD11
Library FC
(Link to library)
Clone ID FC-BD11
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID FC-BD11E
(Link to Original site)
Representative DNA sequence
>FC-BD11 (FC-BD11Q) /CSM/FC/FC-BD/FC-BD11Q.Seq.d/
CACCATCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTC
TCTTCTCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAG
TCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGG
CTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAG
AGCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAAC
CATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCAAGTCTG
AAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCAAATGTCCGGTGTCACAATAC
AAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTAAAAGGCTGACAAAGATTTAAATACA
CCTTATGTAAGGGTCTTGGTATTGATGTTAATGATGTCATCAAATTCGCAATAGATCAAA
CTTGTAAATCAATATATTAAAGAAAGGAAAGAAAAAAAAAAATAAAAAAAAATAAAAAAT
TAAATCTCAATCTTTTTTTAATTATA
sequence update 1997. 9.25
Translated Amino Acid sequence
PSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMA
VNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLKSE
DAKSRFVSNLVGQMSGVTIQRNSSSCRFKLLKG*qrfkytlckglgidvndvikfaidqt
cksiy*rkerkkkikknkklnlnlflii


Translated Amino Acid sequence (All Frames)
Frame A:
hhptwfqvlnhhqircykvvssliqiliviv*v*tinksqsivhsp*rvvlkttnvmvsw
lsmvmvvkvqtinqtlsvvqshiqnllninltslvsllvnhtiiqmttlfnqviyidssl
kmpnlvssli*svkcpvsqykeiqvravsnf*kadkdlntpyvrvlvlmlmmssnsq*ik
lvnqyikerkekkk*kkikn*isiff*l


Frame B:
tiphgsry*titr*dvtrsslllsryssssfrcklstnpsqlsirrkgwc*klpt*wfhg
cqw*ww*rsklstklfrwsratsricst*i*rlwfrcsstiqssk*rlcstr*fi*tqv*
rcqisfrl*fsrsnvrchntkkfkfvpfqtfkrltki*ihlm*gswy*c**chqirnrsn
l*inilkkgkkkknkkk*kiksqsffny


Frame C:
PSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMA
VNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLKSE
DAKSRFVSNLVGQMSGVTIQRNSSSCRFKLLKG*qrfkytlckglgidvndvikfaidqt
cksiy*rkerkkkikknkklnlnlflii


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-BD11 (FC-BD11Q) /CSM/FC/FC-BD/FC-BD11Q.Seq.d/ 1132 0.0
SLH603 (SLH603Q) /CSM/SL/SLH6-A/SLH603Q.Seq.d/ 981 0.0
SFK763 (SFK763Q) /CSM/SF/SFK7-C/SFK763Q.Seq.d/ 981 0.0
SFK640 (SFK640Q) /CSM/SF/SFK6-B/SFK640Q.Seq.d/ 981 0.0
SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/ 981 0.0
VFF503 (VFF503Q) /CSM/VF/VFF5-A/VFF503Q.Seq.d/ 975 0.0
VFK579 (VFK579Q) /CSM/VF/VFK5-D/VFK579Q.Seq.d/ 973 0.0
VFA593 (VFA593Q) /CSM/VF/VFA5-D/VFA593Q.Seq.d/ 969 0.0
SFJ415 (SFJ415Q) /CSM/SF/SFJ4-A/SFJ415Q.Seq.d/ 965 0.0
SFK517 (SFK517Q) /CSM/SF/SFK5-A/SFK517Q.Seq.d/ 954 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 807 0.0 4
AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 807 0.0 4
AJ400965|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR. 76 6e-10 1
AJ400964|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type. 76 6e-10 1
BX564920|BX564920.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse74e09_q1c. 74 3e-09 1
BX554380|BX554380.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse15b01_q1c. 74 3e-09 1
BX554266|BX554266.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse14d06_q1c. 74 3e-09 1
BX554333|BX554333.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse14g12_q1c. 72 1e-08 1
CC133697|CC133697.1 NDL.83G19.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.83G19, DNA sequence. 46 4e-04 2
AE006036|AE006036.1 Pasteurella multocida PM70 section 3 of 204 of the complete genome. 38 5e-04 2
dna update 2003.12.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ... 321 9e-87
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62... 165 9e-40
(O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 162 7e-39
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027... 152 8e-36
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 152 8e-36
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c... 150 2e-35
BC086479_1(BC086479|pid:none) Xenopus laevis hypothetical LOC495... 150 4e-35
BC099349_1(BC099349|pid:none) Xenopus laevis hypothetical LOC495... 150 4e-35
(Q9PWF7) RecName: Full=Catalase; EC=1.11.1.6; &AB03187... 149 5e-35
AY734528_1(AY734528|pid:none) Oplegnathus fasciatus catalase mRN... 148 1e-34
protein update 2009. 7. 2
PSORT

psg: 0.75 gvh: 0.21 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
40.0 %: nuclear
4.0 %: mitochondrial

>> prediction for FC-BD11 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-BD11E
Full length Seq.
>FC-BD11E.Seq
CACCATCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTC
TCTTCTCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAG
TCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGG
CTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAG
AGCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAAC
CATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCAAGTCTG
AAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCAAATGTCCGGTGTCACAATAC
AAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTAAAAGGCTGACAAAGATTTAAATACA
CCTTATGTAAGGGTCTTGGTATTGATGTTAATGATGTCATCAAATTCGCAATAGATCAAA
CTTGTAAATCAATATATTAAAGAAAGGAAAGAAAAAAAAAAATAAAAAAAAATAAAAAAT
TAAATCTCAATCTTTTTTTAATTATA
Length of full length seq. 626