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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BD08
Library FC
(Link to library)
Clone ID FC-BD08
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16001-1
Original site URL
Representative seq. ID FC-BD08P
(Link to Original site)
Representative DNA sequence 
>FC-BD08 (FC-BD08Q) /CSM/FC/FC-BD/FC-BD08Q.Seq.d/
CAGGATACCCACCACAACAACCAGGTGCTCCAGGTCAATATCCACCACAACAAGGTCAAC
CAGGTCAATATCCACCACAACAACCAGGTCAACCAGGTCAATATCCACCACAACAACAAG
GTCAATATCCACCACAACAACCAGGTCAACCAGGTGCCTACCCACCACAACAACCAGGTC
AACCAGGTGCCTATCCACCACAACAAGGTGTACAAAATACACTTGCCAAGACAGGTGCTC
CAGGTCAACCAGGTGTTCCACCACCACAAGGTGCCTATCCAGGTCAACCAGGTGTTCCAC
CACAACAAGGTGCCTATCCAGGTCAACAACCACCAATGGGTGCTTATCCACCACAAGGTC
AACCAGGAGCTTATCCACCACAAGGTCAACCAGGAGCTTATCCACCACAACAACAACAAG
TAGCATATCCAGGTCAACAACCACCAATGGGTGCTTATCCACCACAACAAGGTGCATATC
CAGGTCAACAAGGTGCTTATCCAGGTCAACAAGGTGCATATCCAGGTCAACAAGGTGCAT
ATCCAGGTCAACCACCAATGGGTGCATATCXXXXXXXXXXTAAAATAATTGGTTAAAATA
AGAGAAAATTTTTTTTTTTTTTTCTTTCAATGTATATAATTTATTTGTTTAAAAAAATCG
ATATTAGAAAACTAAAATAATGGTAAAAAAAAAAAAAATTCATTAAATAAAATAATTATT
TTGTACTTTTTAATCAATATAAGAAAAAAAA
sequence update 1997.10. 2
Translated Amino Acid sequence 
RIPTTTTRCSRSISTTTRSTRSISTTTTRSTRSISTTTTRSISTTTTRSTRCLPTTTTRS
TRCLSTTTRCTKYTCQDRCSRSTRCSTTTRCLSRSTRCSTTTRCLSRSTTTNGCLSTTRS
TRSLSTTRSTRSLSTTTTTSSISRSTTTNGCLSTTTRCISRSTRCLSRSTRCISRSTRCI
SRSTTNGCI---

---KIIG*nkrkffffflsmyiiylfkkidirklk*w*kkkkfik*nnyfvlfnqykkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qdthhnnqvlqvnihhnkvnqvnihhnnqvnqvnihhnnkvnihhnnqvnqvpthhnnqv
nqvpihhnkvykihlprqvlqvnqvfhhhkvpiqvnqvfhhnkvpiqvnnhqwvlihhkv
nqelihhkvnqelihhnnnk*hiqvnnhqwvlihhnkvhiqvnkvliqvnkvhiqvnkvh
iqvnhqwvhi---

---*nnwlk*ekiffffsfnvynlfv*knry*ktkimvkkkkih*ik*lfctf*si*ekk

Frame B:
RIPTTTTRCSRSISTTTRSTRSISTTTTRSTRSISTTTTRSISTTTTRSTRCLPTTTTRS
TRCLSTTTRCTKYTCQDRCSRSTRCSTTTRCLSRSTRCSTTTRCLSRSTTTNGCLSTTRS
TRSLSTTRSTRSLSTTTTTSSISRSTTTNGCLSTTTRCISRSTRCLSRSTRCISRSTRCI
SRSTTNGCI---

---KIIG*nkrkffffflsmyiiylfkkidirklk*w*kkkkfik*nnyfvlfnqykkk

Frame C:
gyppqqpgapgqyppqqgqpgqyppqqpgqpgqyppqqqgqyppqqpgqpgayppqqpgq
pgayppqqgvqntlaktgapgqpgvpppqgaypgqpgvppqqgaypgqqppmgayppqgq
pgayppqgqpgayppqqqqvaypgqqppmgayppqqgaypgqqgaypgqqgaypgqqgay
pgqppmgay---

---k*lvkirenffffffqci*ficlkksilen*nngkkkknslnkiiilyflinirkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BD08 (FC-BD08Q) /CSM/FC/FC-BD/FC-BD08Q.Seq.d/                     1146   0.0
SSC685 (SSC685Q) /CSM/SS/SSC6-D/SSC685Q.Seq.d/                        502   e-141
SLJ696 (SLJ696Q) /CSM/SL/SLJ6-D/SLJ696Q.Seq.d/                         78   2e-13
VSI841 (VSI841Q) /CSM/VS/VSI8-B/VSI841Q.Seq.d/                         50   5e-05
VSG884 (VSG884Q) /CSM/VS/VSG8-D/VSG884Q.Seq.d/                         50   5e-05
VFN536 (VFN536Q) /CSM/VF/VFN5-B/VFN536Q.Seq.d/                         50   5e-05
VFM762 (VFM762Q) /CSM/VF/VFM7-C/VFM762Q.Seq.d/                         50   5e-05
VFI766 (VFI766Q) /CSM/VF/VFI7-C/VFI766Q.Seq.d/                         50   5e-05
VFH471 (VFH471Q) /CSM/VF/VFH4-C/VFH471Q.Seq.d/                         50   5e-05
VFF651 (VFF651Q) /CSM/VF/VFF6-C/VFF651Q.Seq.d/                         50   5e-05
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U03413|U03413.1 Dictyostelium discoideum AX2 calcium binding protein mRNA, complete cds.  1130  0.0  14
BH161173|BH161173.1 ENTTB30TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48  1e-36  10
AZ545567|AZ545567.1 ENTEX13TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48  2e-31  8
X60270|X60270.1 D.discoideum DdANN7 mRNA for annexin VII, partial cds.    38  7e-31  10
X60269|X60269.1 D.discoideum DdANN7 gene for annexin VII, partial cds.    38  4e-30  10
BH164149|BH164149.1 ENTSP76TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  5e-29  8
M69022|M69022.1 D.discoideum annexin VII (synexin) mRNA, complete cds.    38  2e-25  9
AZ691009|AZ691009.1 ENTMH75TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48  6e-16  6
AZ548040|AZ548040.1 ENTFS27TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40  2e-15  5
AW244978|AW244978.1 BSBmMFSZ31C21SK Brugia malayi microfilaria cDNA (SAW94LS-BmMf) Brugia malayi cDNA clone BSBmMFSZ31C21 5', mRNA sequence.    68  9e-15  6
dna update 2003. 7.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844509_229(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    52   1e-05
DQ351536_1(DQ351536|pid:none) Mytilus californianus foot protein...    45   0.003
AE014188_476(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    44   0.004
L04161_1(L04161|pid:none) Plasmodium falciparum clone Pfg377 Pfs...    44   0.004
S14983(S14983)extensin class I (clone w10-1 L) - tomato (fragment)     44   0.004
(P36417) RecName: Full=G-box-binding factor;          Short=GBF;       42   0.020
AE014186_457(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    41   0.033
(P04929) Histidine-rich glycoprotein precursor.  &KGZQHL(A22692)...    41   0.043
AE014187_405(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    41   0.043
AM910991_170(AM910991|pid:none) Plasmodium knowlesi strain H chr...    41   0.043
protein update 2009. 4.14
PSORT 

 psg: 0.71  gvh: 0.40  alm: 0.58  top: 0.53  tms: 0.00  mit: 1.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: nuclear

>> prediction for FC-BD08 is mit
5' end seq. ID FC-BD08F
5' end seq. 
>FC-BD08F.Seq
CAGGATACCCACCACAACAACCAGGTGCTCCAGGTCAATATCCACCACAACAAGGTCAAC
CAGGTCAATATCCACCACAACAACCAGGTCAACCAGGTCAATATCCACCACAACAACAAG
GTCAATATCCACCACAACAACCAGGTCAACCAGGTGCCTACCCACCACAACAACCAGGTC
AACCAGGTGCCTATCCACCACAACAAGGTGTACAAAATACACTTGCCAAGACAGGTGCTC
CAGGTCAACCAGGTGTTCCACCACCACAAGGTGCCTATCCAGGTCAACCAGGTGTTCCAC
CACAACAAGGTGCCTATCCAGGTCAACAACCACCAATGGGTGCTTATCCACCACAAGGTC
AACCAGGAGCTTATCCACCACAAGGTCAACCAGGAGCTTATCCACCACAACAACAACAAG
TAGCATATCCAGGTCAACAACCACCAATGGGTGCTTATCCACCACAACAAGGTGCATATC
CAGGTCAACAAGGTGCTTATCCAGGTCAACAAGGTGCATATCCAGGTCAACAAGGTGCAT
ATCCAGGTCAACCACCAATGGGTGCATATC----------
Length of 5' end seq. 570
3' end seq. ID FC-BD08Z
3' end seq. 
>FC-BD08Z.Seq
----------TAAAATAATTGGTTAAAATAAGAGAAAATTTTTTTTTTTTTTTCTTTCAA
TGTATATAATTTATTTGTTTAAAAAAATCGATATTAGAAAACTAAAATAATGGTAAAAAA
AAAAAAAATTCATTAAATAAAATAATTATTTTGTACTTTTTAATCAATATAAGAAAAAAA
A
Length of 3' end seq. 171
Connected seq. ID FC-BD08P
Connected seq. 
>FC-BD08P.Seq
CAGGATACCCACCACAACAACCAGGTGCTCCAGGTCAATATCCACCACAACAAGGTCAAC
CAGGTCAATATCCACCACAACAACCAGGTCAACCAGGTCAATATCCACCACAACAACAAG
GTCAATATCCACCACAACAACCAGGTCAACCAGGTGCCTACCCACCACAACAACCAGGTC
AACCAGGTGCCTATCCACCACAACAAGGTGTACAAAATACACTTGCCAAGACAGGTGCTC
CAGGTCAACCAGGTGTTCCACCACCACAAGGTGCCTATCCAGGTCAACCAGGTGTTCCAC
CACAACAAGGTGCCTATCCAGGTCAACAACCACCAATGGGTGCTTATCCACCACAAGGTC
AACCAGGAGCTTATCCACCACAAGGTCAACCAGGAGCTTATCCACCACAACAACAACAAG
TAGCATATCCAGGTCAACAACCACCAATGGGTGCTTATCCACCACAACAAGGTGCATATC
CAGGTCAACAAGGTGCTTATCCAGGTCAACAAGGTGCATATCCAGGTCAACAAGGTGCAT
ATCCAGGTCAACCACCAATGGGTGCATATC----------TAAAATAATTGGTTAAAATA
AGAGAAAATTTTTTTTTTTTTTTCTTTCAATGTATATAATTTATTTGTTTAAAAAAATCG
ATATTAGAAAACTAAAATAATGGTAAAAAAAAAAAAAATTCATTAAATAAAATAATTATT
TTGTACTTTTTAATCAATATAAGAAAAAAAA
Length of connected seq. 741
Full length Seq ID -
Full length Seq. -
Length of full length seq. -