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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BD02
Library FC
(Link to library)
Clone ID FC-BD02
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15674-1
Original site URL
Representative seq. ID FC-BD02Z
(Link to Original site)
Representative DNA sequence 
>FC-BD02 (FC-BD02Q) /CSM/FC/FC-BD/FC-BD02Q.Seq.d/
XXXXXXXXXXAATTAGGTCGTCTCGTTGCTCTTGGTTTAGTCGAGAATATCCACGAAATC
TATCTTTTCTCTTTACCAATCAAGGAGTACCAAATCATTGATAAATTCCTTAACCTCAAG
GATGAAGTTATGAAGATTGTTCCAGTTCAAAAGCAAACTCGTGCTGGTCAACGTACCCGT
TTCAAGGCTTTCGTCGTTGTTGGTGATCACAACGGTCATGTAGGTCTCGGTGTTAAATGC
GCTAAGGAAGTTGCCACCGCCATTTCTGGTGCTATCGTTGCTGCCAAATTATCAGTCATC
CCAGTTCGTCGTGGTTATTGGGGTAACAAACTCGGTGCTCCACACACTGTCCCAACCAAA
GTCACTGGTAAATGCGGTTCCGTCGCTGTACGTCTCGTTCCAGCCCCAAGAGGTACTGGT
ATCGTTGCTGCTCGTGTTCCAAAGAAATTACTCCAATATGCTGGTGTTGATGATGTTTAC
ACATCTTCACGTGGTAAGACCAGACCCATGGGTAACTTTGTCATGGCCACCTCCTTCGCC
ATCACCAAGACCTTTGCTTACTTAACCCCAGATCTTTGGACAGAAGTCAAATTAATCAAG
ACTCCATACCAAGAACACATGCCAAATTATCCGAAAAACAACAATAAATCAATTTTAATT
AATTTTTTCCTGTTTTA
sequence update 1997. 9.25
Translated Amino Acid sequence 
---LGRLVALGLVENIHEIYLFSLPIKEYQIIDKFLNLKDEVMKIVPVQKQTRAGQRTRF
KAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTKV
TGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRPMGNFVMATSFAI
TKTFAYLTPDLWTEVKLIKTPYQEHMPNYPKNNNKSILINFFLF
Translated Amino Acid sequence (All Frames) 
Frame A:
---irssrcswfsreyprnlsflftnqgvpnh**ip*pqg*syedcssskanscwstypf
qgfrrcw*sqrscrsrc*mr*gschrhfwcyrccqiishpssswllg*qtrcsthcpnqs
hw*mrfrrctsrsspkrywyrccscskeitpicwc**clhiftw*dqthg*lchghllrh
hqdlcllnprsldrsqinqdsiprthaklsekqq*infn*ffpvl


Frame B:
---LGRLVALGLVENIHEIYLFSLPIKEYQIIDKFLNLKDEVMKIVPVQKQTRAGQRTRF
KAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTKV
TGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRPMGNFVMATSFAI
TKTFAYLTPDLWTEVKLIKTPYQEHMPNYPKNNNKSILINFFLF


Frame C:
---*vvslllv*sristksifslyqsrstkslinsltsrmkl*rlfqfksklvlvnvpvs
rlssllvittvm*vsvlnalrklpppflvlsllpnyqssqfvvvigvtnsvlhtlsqpks
lvnavpslyvsfqpqevlvslllvfqrnysnmlvlmmfthlhvvrpdpwvtlswpppsps
prpllt*pqifgqksn*srlhtkntcqiirkttinqf*lifscf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BD02 (FC-BD02Q) /CSM/FC/FC-BD/FC-BD02Q.Seq.d/                     1322   0.0
SLE490 (SLE490Q) /CSM/SL/SLE4-D/SLE490Q.Seq.d/                       1261   0.0
VHC440 (VHC440Q) /CSM/VH/VHC4-B/VHC440Q.Seq.d/                       1251   0.0
VFE388 (VFE388Q) /CSM/VF/VFE3-D/VFE388Q.Seq.d/                       1235   0.0
VHN687 (VHN687Q) /CSM/VH/VHN6-D/VHN687Q.Seq.d/                       1225   0.0
VHC570 (VHC570Q) /CSM/VH/VHC5-C/VHC570Q.Seq.d/                       1225   0.0
AFO729 (AFO729Q) /CSM/AF/AFO7-B/AFO729Q.Seq.d/                       1217   0.0
SLC152 (SLC152Q) /CSM/SL/SLC1-C/SLC152Q.Seq.d/                       1152   0.0
FC-AC19 (FC-AC19Q) /CSM/FC/FC-AC/FC-AC19Q.Seq.d/                     1140   0.0
FC-BA12 (FC-BA12Q) /CSM/FC/FC-BA/FC-BA12Q.Seq.d/                     1124   0.0
own update 2002.10. 7
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X56297|X56297.1 D.discoideum LLRep3 mRNA.                       1174  0.0  2
AU011370|AU011370.1 Schizosaccharomyces pombe cDNA, clone spc11190.    96  3e-33  6
AU010208|AU010208.1 Schizosaccharomyces pombe cDNA, clone spc05562.   109  1e-30  4
AU006568|AU006568.1 Schizosaccharomyces pombe cDNA, clone spc00131.   101  5e-30  4
AU011889|AU011889.1 Schizosaccharomyces pombe cDNA, clone spc06061.   109  5e-30  4
AU008028|AU008028.1 Schizosaccharomyces pombe cDNA, clone spc02783.   109  2e-28  3
AL031798|AL031798.1 S.pombe chromosome III cosmid c576.          109  3e-28  6
AU013664|AU013664.1 Schizosaccharomyces pombe cDNA, clone spc08473.   105  4e-27  3
BW049012|BW049012.1 Ciona intestinalis cDNA, clone:cibd066d24, 5' end, single read.   113  5e-22  2
BW019807|BW019807.1 Ciona intestinalis cDNA, clone:rcibd066d24, 3' end, single read.   113  6e-22  2
dna update 2003. 7.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P27685) RecName: Full=40S ribosomal protein S2; AltName: Full=R...   379   e-104
AY961548_1(AY961548|pid:none) Lysiphlebus testaceipes ribosomal ...   302   7e-81
EF146355_1(EF146355|pid:none) Populus trichocarpa clone WS0117_H...   301   1e-80
(Q9SCM3) RecName: Full=40S ribosomal protein S2-4;  &AK228054_1(...   300   3e-80
AY085726_1(AY085726|pid:none) Arabidopsis thaliana clone 17415 m...   300   3e-80
EF675774_1(EF675774|pid:none) Artemia franciscana 40S ribosomal ...   299   4e-80
AY088743_1(AY088743|pid:none) Arabidopsis thaliana clone 93867 m...   298   9e-80
AB008017_1(AB008017|pid:none) Arabidopsis thaliana RF12 mRNA, pa...   298   9e-80
(Q93VB8) RecName: Full=40S ribosomal protein S2-2;  &AB076984_1(...   298   9e-80
AC140104_23(AC140104|pid:none) Medicago truncatula clone mth2-10...   298   9e-80
protein update 2009. 4.14
PSORT 

 psg: 0.71  gvh: 0.42  alm: 0.31  top: 0.73  tms: 0.07  mit: 0.21  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: endoplasmic reticulum

>> prediction for FC-BD02 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-BD02Z
3' end seq. 
>FC-BD02Z.Seq
----------AATTAGGTCGTCTCGTTGCTCTTGGTTTAGTCGAGAATATCCACGAAATC
TATCTTTTCTCTTTACCAATCAAGGAGTACCAAATCATTGATAAATTCCTTAACCTCAAG
GATGAAGTTATGAAGATTGTTCCAGTTCAAAAGCAAACTCGTGCTGGTCAACGTACCCGT
TTCAAGGCTTTCGTCGTTGTTGGTGATCACAACGGTCATGTAGGTCTCGGTGTTAAATGC
GCTAAGGAAGTTGCCACCGCCATTTCTGGTGCTATCGTTGCTGCCAAATTATCAGTCATC
CCAGTTCGTCGTGGTTATTGGGGTAACAAACTCGGTGCTCCACACACTGTCCCAACCAAA
GTCACTGGTAAATGCGGTTCCGTCGCTGTACGTCTCGTTCCAGCCCCAAGAGGTACTGGT
ATCGTTGCTGCTCGTGTTCCAAAGAAATTACTCCAATATGCTGGTGTTGATGATGTTTAC
ACATCTTCACGTGGTAAGACCAGACCCATGGGTAACTTTGTCATGGCCACCTCCTTCGCC
ATCACCAAGACCTTTGCTTACTTAACCCCAGATCTTTGGACAGAAGTCAAATTAATCAAG
ACTCCATACCAAGAACACATGCCAAATTATCCGAAAAACAACAATAAATCAATTTTAATT
AATTTTTTCCTGTTTTA
Length of 3' end seq. 667
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -