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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-BC24
Library FC
(Link to library)
Clone ID FC-BC24
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15479-1
Original site URL
Representative seq. ID FC-BC24Z
(Link to Original site)
Representative DNA sequence 
>FC-BC24 (FC-BC24Q) /CSM/FC/FC-BC/FC-BC24Q.Seq.d/
XXXXXXXXXXCTGGTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAAGATTGCC
ACTAAAATCAACAGAGGTCAAATCGATATCGTCAATGAAGTCCACATCATTAAAACCGGT
CAAAAAGTTGGTGCCTCAGAAGCTACCCTCTTACAAAAATTGAACATCAAACCATTCACC
TATGGTTTAGAACCAAAAATCATCTATGATGCTGGTGCCTGTTATTCACCATCTATCTCT
GAAGAAGATCTCATCAACAAATTCAAACAAGGTATCTTCAACATTGCTGCCATCTCCTTG
GAAATTGGTTACCCAACCGTTGCTTCAATTCCACATTCAGTCATGAATGCTTTCAAGAAT
TTATTAGCCATCTCATTCGAAACCTCTTACACTTTCGATGCTGCTGAAAAATTCAAATCA
GCCGCTGCTGCTGCCCCAGTTGCTGCCGCTCCATCCGCTGCTGCTCCAGCTGCCGCTGCC
AAGAAAGTCGTCGTCGAAGAAAAGAAAGAAGAATCAGATGATGATATGGGTATGGGTCTC
TTTGATTAAGATTTGAATAAATAAATTTTTTTTTTCAAAAAACATCAA
sequence update 1997. 7. 2
Translated Amino Acid sequence 
---GMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNIKPFTY
GLEPKIIYDAGACYSPSISEEDLINKFKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNL
LAISFETSYTFDAAEKFKSAAAAAPVAAAPSAAAPAAAAKKVVVEEKKEESDDDMGMGLF
D*dlnk*ifffkkhq
Translated Amino Acid sequence (All Frames) 
Frame A:
---wygtnpnlfpprfkdch*nqqrsnryrq*sphh*nrskswclrsypltkiehqtihl
wfrtknhl*cwcllftiyl*rrshqqiqtrylqhcchllgnwlpnrcfnstfshecfqef
ishlirnllhfrcc*kiqisrcccpsccrsirccsscrcqesrrrrkerrir**ygygsl
*lrfe*infffqkts


Frame B:
---GMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNIKPFTY
GLEPKIIYDAGACYSPSISEEDLINKFKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNL
LAISFETSYTFDAAEKFKSAAAAAPVAAAPSAAAPAAAAKKVVVEEKKEESDDDMGMGLF
D*dlnk*ifffkkhq


Frame C:
---vwnqpkplsski*rlplkstevksissmkstslkpvkklvpqklpsykn*tsnhspm
v*nqkssmmlvpvihhlslkkisstnsnkvsstllpspwklvtqpllqfhiqs*mlsriy
*pshskpltlsmllknsnqplllpqllplhplllqlplprkssskkrkknqmmiwvwvsl
iki*inkfffskni
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH315 (VSH315Q) /CSM/VS/VSH3-A/VSH315Q.Seq.d/                        809   0.0
VFL888 (VFL888Q) /CSM/VF/VFL8-D/VFL888Q.Seq.d/                        809   0.0
VFK873 (VFK873Q) /CSM/VF/VFK8-D/VFK873Q.Seq.d/                        809   0.0
VFJ633 (VFJ633Q) /CSM/VF/VFJ6-B/VFJ633Q.Seq.d/                        809   0.0
VFH753 (VFH753Q) /CSM/VF/VFH7-C/VFH753Q.Seq.d/                        809   0.0
VFH730 (VFH730Q) /CSM/VF/VFH7-B/VFH730Q.Seq.d/                        809   0.0
VFG702 (VFG702Q) /CSM/VF/VFG7-A/VFG702Q.Seq.d/                        809   0.0
VFF854 (VFF854Q) /CSM/VF/VFF8-C/VFF854Q.Seq.d/                        809   0.0
VFF848 (VFF848Q) /CSM/VF/VFF8-B/VFF848Q.Seq.d/                        809   0.0
VFE158 (VFE158Q) /CSM/VF/VFE1-C/VFE158Q.Seq.d/                        809   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X56194|X56194.1 D. discoideum mRNA for ribosomal acidic phosphoprotein P0.  1068  0.0  2
CD681220|CD681220.1 tac23d06.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:RLA1_CHICK P18660 60S ACIDIC RIBOSOMAL PROTEIN P1. ;, mRNA sequence.    54  3e-14  4
CD267920|CD267920.1 tab12d07.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RLA1_CHICK P18660 60S ACIDIC RIBOSOMAL PROTEIN P1. ;, mRNA sequence.    52  6e-14  4
CA302134|CA302134.1 taa10f10.y1 Hydra cDNA library Hydra magnipapillata cDNA 5' similar to SW:RLA1_CHICK P18660 60S ACIDIC RIBOSOMAL PROTEIN P1. ;, mRNA sequence.    52  9e-14  4
CA303102|CA303102.1 taa03c02.y1 Hydra cDNA library Hydra magnipapillata cDNA 5' similar to SW:RLA1_CHICK P18660 60S ACIDIC RIBOSOMAL PROTEIN P1. ;, mRNA sequence.    52  1e-13  4
CB073609|CB073609.1 taa18e05.y1 Hydra EST -II Hydra vulgaris cDNA 5' similar to SW:RLA1_CHICK P18660 60S ACIDIC RIBOSOMAL PROTEIN P1. ;, mRNA sequence.    52  1e-13  4
CB073577|CB073577.1 taa18a10.y1 Hydra EST -II Hydra vulgaris cDNA 5' similar to SW:RLA1_CHICK P18660 60S ACIDIC RIBOSOMAL PROTEIN P1. ;, mRNA sequence.    52  1e-13  4
CD566111|CD566111.1 tab99b10.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:RLA1_HUMAN P05386 60S ACIDIC RIBOSOMAL PROTEIN P1. ;, mRNA sequence.    52  1e-13  4
CD680218|CD680218.1 tac19c10.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:RLA1_CHICK P18660 60S ACIDIC RIBOSOMAL PROTEIN P1. ;, mRNA sequence.    52  2e-13  4
CB936007|CB936007.1 taa43a11.y2 Hydra EST -III Hydra magnipapillata cDNA 5' similar to SW:RLA1_DROME P08570 60S ACIDIC RIBOSOMAL PROTEIN P1 ;, mRNA sequence.    50  2e-12  4
dna update 2003. 7.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

R5DOP0(S14012) ribosomal protein P0 - slime mold (Dictyostelium ...   255   5e-67
(P22685) RecName: Full=60S acidic ribosomal protein P0;               255   5e-67
AY857422_1(AY857422|pid:none) Suberites domuncula L10e/P0 mRNA, ...   161   1e-38
DQ516397_1(DQ516397|pid:none) Strongyloides ratti acidic ribosom...   151   1e-35
EU069460_1(EU069460|pid:none) Stylophora pistillata 60S acidic r...   151   1e-35
AY072284_1(AY072284|pid:none) Spodoptera frugiperda 60S acidic r...   151   1e-35
AJ457827_1(AJ457827|pid:none) Bombyx mori mRNA for ribosomal P0 ...   150   2e-35
BC042268_1(BC042268|pid:none) Xenopus laevis acidic ribosomal pr...   148   1e-34
(Q95140) RecName: Full=60S acidic ribosomal protein P0; AltName:...   147   2e-34
(P05388) RecName: Full=60S acidic ribosomal protein P0; AltName:...   147   2e-34
protein update 2009. 4.14
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for FC-BC24 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-BC24Z
3' end seq. 
>FC-BC24Z.Seq
----------CTGGTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAAGATTGCC
ACTAAAATCAACAGAGGTCAAATCGATATCGTCAATGAAGTCCACATCATTAAAACCGGT
CAAAAAGTTGGTGCCTCAGAAGCTACCCTCTTACAAAAATTGAACATCAAACCATTCACC
TATGGTTTAGAACCAAAAATCATCTATGATGCTGGTGCCTGTTATTCACCATCTATCTCT
GAAGAAGATCTCATCAACAAATTCAAACAAGGTATCTTCAACATTGCTGCCATCTCCTTG
GAAATTGGTTACCCAACCGTTGCTTCAATTCCACATTCAGTCATGAATGCTTTCAAGAAT
TTATTAGCCATCTCATTCGAAACCTCTTACACTTTCGATGCTGCTGAAAAATTCAAATCA
GCCGCTGCTGCTGCCCCAGTTGCTGCCGCTCCATCCGCTGCTGCTCCAGCTGCCGCTGCC
AAGAAAGTCGTCGTCGAAGAAAAGAAAGAAGAATCAGATGATGATATGGGTATGGGTCTC
TTTGATTAAGATTTGAATAAATAAATTTTTTTTTTCAAAAAACATCAA
Length of 3' end seq. 578
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -