>FC-BA14 (FC-BA14Q) /CSM/FC/FC-BA/FC-BA14Q.Seq.d/
AAATGGGTCGTGTTAGAACAAAGACAATCAAAAGAGCTTCCAAACTCCTCATTGAGAAGC
ATTACCCAAGACTTACCAATGACTTCGACACTAACAAGAGAACTTGCGACAAACTCGCCA
AGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATTTAATGAGAC
GTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAGAAAGAGAAA
AGAGAGATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTAAAATCGATC
GTGATGTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCAACCATCCCACAAATCCACG
TCGTTGACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAACGTCAGATT
GTTGATTATATAGAAAAAAAAAAAAA

MGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFCTHLMRR
IANGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEMLKSTLEFPTIPQIHV
VDQKRYNKNTKKSNK*tsdc*lyrkkkk

Frame A:
kwvvleqrqskelpnsslrsitqdlpmtstltrelatnsprshqnv*etrllvsvpi**d
vllmvqsvvfltnykkkkekreittfhknqpskptklksivmlkkclnllwnsqpshkst
sltkrdttktpknqtnkrqivdyiekkk


Frame B:
ngsc*nkdnqksfqtph*ealpktyq*lrh*qenlrqtrqdpiktfkkqdcwflypfnet
yc*wsspwyflqitrrrkrker*lrstrishqnqrs*nrs*c*rna*iyfgipnhptnpr
r*pkeiqqkhqkikqinvrllii*kkkk


Frame C:
MGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFCTHLMRR
IANGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEMLKSTLEFPTIPQIHV
VDQKRYNKNTKKSNK*tsdc*lyrkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ410 (VSJ410Q) /CSM/VS/VSJ4-A/VSJ410Q.Seq.d/                        440   e-123
VSI470 (VSI470Q) /CSM/VS/VSI4-C/VSI470Q.Seq.d/                        440   e-123
VSI273 (VSI273Q) /CSM/VS/VSI2-D/VSI273Q.Seq.d/                        440   e-123
VSI191 (VSI191Q) /CSM/VS/VSI1-D/VSI191Q.Seq.d/                        440   e-123
VSH760 (VSH760Q) /CSM/VS/VSH7-C/VSH760Q.Seq.d/                        440   e-123
VSH591 (VSH591Q) /CSM/VS/VSH5-D/VSH591Q.Seq.d/                        440   e-123
VSG216 (VSG216Q) /CSM/VS/VSG2-A/VSG216Q.Seq.d/                        440   e-123
VSF388 (VSF388Q) /CSM/VS/VSF3-D/VSF388Q.Seq.d/                        440   e-123
VSD873 (VSD873Q) /CSM/VS/VSD8-D/VSD873Q.Seq.d/                        440   e-123
VSD836 (VSD836Q) /CSM/VS/VSD8-B/VSD836Q.Seq.d/                        440   e-123

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L35173|L35173.1 Dictyostelium discoideum ribosomal protein (rps17) gene, complete cds.   432   e-179  4
BG259081|BG259081.1 602379133F1 NIH_MGC_92 Homo sapiens cDNA clone IMAGE:4509608 5', mRNA sequence.    50   1e-08  2
BQ434132|BQ434132.1 AGENCOURT_7808782 NIH_MGC_92 Homo sapiens cDNA clone IMAGE:6069301 5', mRNA sequence.    50   1e-08  2
CD477300|CD477300.1 eca01-12ms1-h08 Eca01 Eschscholzia californica cDNA clone eca01-12ms1-h08 5', mRNA sequence.    42   3e-05  2
CD476897|CD476897.1 eca01-7ms1-c05 Eca01 Eschscholzia californica cDNA clone eca01-7ms1-c05 5', mRNA sequence.    42   3e-05  2
CD477145|CD477145.1 eca01-14ms1-h01 Eca01 Eschscholzia californica cDNA clone eca01-14ms1-h01 5', mRNA sequence.    42   4e-05  2
AY087862|AY087862.1 Arabidopsis thaliana clone 39018 mRNA, complete sequence.    34   2e-04  3
H36865|H36865.1 14994 Lambda-PRL2 Arabidopsis thaliana cDNA clone 180B22T7, mRNA sequence.    36   3e-04  3
CD477559|CD477559.1 eca01-11ms1-h08 Eca01 Eschscholzia californica cDNA clone eca01-11ms1-h08 5', mRNA sequence.    40   5e-04  2
AA390236|AA390236.1 CpEST.220 pSKIIminusCpIOWAsporoLib2 Cryptosporidium parvum cDNA 5' similar to 40S ribosomal protein S17A, mRNA sequence.    46   5e-04  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU124942_1(EU124942|pid:none) Arenicola marina ribosomal protein...   158   5e-38
EU247177_1(EU247177|pid:none) Lycosa singoriensis clone LSsin973...   158   7e-38
AY857475_1(AY857475|pid:none) Suberites domuncula S17 mRNA, comp...   157   1e-37
DQ066305_1(DQ066305|pid:none) Ixodes scapularis isolate IS-6-12L...   156   2e-37
AF548334_1(AF548334|pid:none) Branchiostoma belcheri ribosomal p...   156   2e-37
(A5PK63) RecName: Full=40S ribosomal protein S17;  &BC142374_1(B...   155   6e-37
BC091562_1(BC091562|pid:none) Danio rerio zgc:114188, mRNA (cDNA...   155   6e-37
AY892179_1(AY892179|pid:none) Synthetic construct Homo sapiens c...   154   7e-37
BT058153_1(BT058153|pid:none) Salmo salar clone Contig981 40S ri...   154   7e-37
(P08708) RecName: Full=40S ribosomal protein S17;  &AB174364_1(A...   154   7e-37

 psg: 0.60  gvh: 0.22  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.03
 nuc: 0.23  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial

>> prediction for FC-BA14 is cyt

>FC-BA14E.Seq
AAATGGGTCGTGTTAGAACAAAGACAATCAAAAGAGCTTCCAAACTCCTCATTGAGAAGC
ATTACCCAAGACTTACCAATGACTTCGACACTAACAAGAGAACTTGCGACAAACTCGCCA
AGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATTTAATGAGAC
GTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAGAAAGAGAAA
AGAGAGATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTAAAATCGATC
GTGATGTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCAACCATCCCACAAATCCACG
TCGTTGACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAACGTCAGATT
GTTGATTATATAGAAAAAAAAAAAAA