>FC-AZ21 (FC-AZ21Q) /CSM/FC/FC-AZ/FC-AZ21Q.Seq.d/
XXXXXXXXXXATCACACATTTTCGTTCCATCATCAGAAGTTGGAGTTTTAAATATTGTAT
CACAATTAAAAGGTATCAAAGGATCAGTTTTTGTTGCCAAAGAATCTGACACCCAATTTG
AAATTGAAGGTGCCCAAAATATTTTATTATCAGAAGCCTCAAAAATTCAACCAACCTTAT
CAAACAAAGTTGTTGATATCGTAGTTGTTTTACTCGCTCAAAATCAAGACTCAACCATCA
AACAATTCCAATCTGTTGTTGAAAAATCATCATTCGTTTCTTTCTTTACTGCTGCTTCTG
CTCATGAATTTGATGTTCAAGCTACTTTCAACAAACAAGTTGAACAATCATTTTTACAAG
ATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGTAGTGGATCAAGTAGTTCAGGAT
CAAATGAACCAACTAAACAACATTTCACTTATGTTACTGGTCCAGTCCTTTCTGCTTATT
TGATTATCTCAATCTTATTAGCCATTTTATTCACTGGTATTTGTTGTATTTCTGATCTCC
AAGTTCCAGATAGATACGAAGCACCAAAGAGCAAAGTACTTTAA

---SHIFVPSSEVGVLNIVSQLKGIKGSVFVAKESDTQFEIEGAQNILLSEASKIQPTLS
NKVVDIVVVLLAQNQDSTIKQFQSVVEKSSFVSFFTAASAHEFDVQATFNKQVEQSFLQD
GSSSLNSASQQGSGSSSSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQ
VPDRYEAPKSKVL*

Frame A:
---SHIFVPSSEVGVLNIVSQLKGIKGSVFVAKESDTQFEIEGAQNILLSEASKIQPTLS
NKVVDIVVVLLAQNQDSTIKQFQSVVEKSSFVSFFTAASAHEFDVQATFNKQVEQSFLQD
GSSSLNSASQQGSGSSSSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQ
VPDRYEAPKSKVL*


Frame B:
---htfsfhhqklef*ilyhn*kvskdqfllpknltpnlklkvpkifyyqkpqkfnqpyq
tkllis*lfyslkiktqpsnnsnlllknhhsflsllllllmnlmfkllstnklnnhfykm
vhhh*iqpankvvdqvvqdqmnqlnnislmllvqsflli*lsqsy*pfyslvfvvflisk
fqidtkhqrakyf


Frame C:
---thfrsiirswsfkycitikryqrisfccqri*hpi*n*rcpkyfiirslknstnlik
qsc*yrscftrsksrlnhqtipicc*kiiirfflyccfcs*i*cssyfqqts*tiiftrw
fiiikfsqptr*wik*frik*tn*ttfhlcywsspfclfdylnlishfihwyllyf*sps
sr*irstkeqstl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM106 (SSM106Q) /CSM/SS/SSM1-A/SSM106Q.Seq.d/                       1138   0.0
SSK743 (SSK743Q) /CSM/SS/SSK7-B/SSK743Q.Seq.d/                       1138   0.0
SSK603 (SSK603Q) /CSM/SS/SSK6-A/SSK603Q.Seq.d/                       1138   0.0
SSC826 (SSC826Q) /CSM/SS/SSC8-B/SSC826Q.Seq.d/                       1138   0.0
FC-AZ21 (FC-AZ21Q) /CSM/FC/FC-AZ/FC-AZ21Q.Seq.d/                     1138   0.0
SSE549 (SSE549Q) /CSM/SS/SSE5-C/SSE549Q.Seq.d/                       1134   0.0
SSF812 (SSF812Q) /CSM/SS/SSF8-A/SSF812Q.Seq.d/                       1130   0.0
SSA685 (SSA685Q) /CSM/SS/SSA6-D/SSA685Q.Seq.d/                       1130   0.0
SSC673 (SSC673Q) /CSM/SS/SSC6-D/SSC673Q.Seq.d/                       1124   0.0
SSL653 (SSL653Q) /CSM/SS/SSL6-C/SSL653Q.Seq.d/                       1114   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   620  0.0  2
AC128812|AC128812.3 Rattus norvegicus clone CH230-74E1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.46  1
BZ280299|BZ280299.1 CH230-393O23.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-393O23, DNA sequence.    46  0.46  1
BZ237908|BZ237908.1 CH230-418F3.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-418F3, DNA sequence.    46  0.46  1
AP004824|AP004824.1 Staphylococcus aureus DNA, complete genome, strain:MW2, section 3/10.    38  0.84  5
AL117193|AL117193.2 Caenorhabditis elegans YAC Y105C5A.           42  1.1  5
AC100822|AC100822.2 Homo sapiens chromosome 8, clone RP11-654O1, complete sequence.    44  1.1  2
AC118764|AC118764.3 Rattus norvegicus clone CH230-335N22, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    38  1.3  2
AC124921|AC124921.3 Rattus norvegicus clone CH230-214L24, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    40  1.6  5
AP002871|AP002871.2 Oryza sativa genomic DNA, chromosome 1, PAC clone:P0475H04.    38  1.6  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_20(AC116330|pid:none) Dictyostelium discoideum chromoso...   246   2e-64

 psg: 0.75  gvh: 0.47  alm: 0.14  top: 0.50  tms: 0.07  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: vesicles of secretory system
	 16.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for FC-AZ21 is cyt

>FC-AZ21Z.Seq
----------ATCACACATTTTCGTTCCATCATCAGAAGTTGGAGTTTTAAATATTGTAT
CACAATTAAAAGGTATCAAAGGATCAGTTTTTGTTGCCAAAGAATCTGACACCCAATTTG
AAATTGAAGGTGCCCAAAATATTTTATTATCAGAAGCCTCAAAAATTCAACCAACCTTAT
CAAACAAAGTTGTTGATATCGTAGTTGTTTTACTCGCTCAAAATCAAGACTCAACCATCA
AACAATTCCAATCTGTTGTTGAAAAATCATCATTCGTTTCTTTCTTTACTGCTGCTTCTG
CTCATGAATTTGATGTTCAAGCTACTTTCAACAAACAAGTTGAACAATCATTTTTACAAG
ATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGTAGTGGATCAAGTAGTTCAGGAT
CAAATGAACCAACTAAACAACATTTCACTTATGTTACTGGTCCAGTCCTTTCTGCTTATT
TGATTATCTCAATCTTATTAGCCATTTTATTCACTGGTATTTGTTGTATTTCTGATCTCC
AAGTTCCAGATAGATACGAAGCACCAAAGAGCAAAGTACTTTAA